Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004069

Physical Location & Seq

Genomic Coordinates Reverse (-)

6235563 .. 6239465

Gene Structure 3903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCATCACGCTCCGGCGACGATCGAGGAACAGTTGCTGCTGAAAGCAATTAAAGAAGAATGCCCCTGGGAGAGTCTACCGAAACGGCTCCAAGCGACGTTGTCTTCGAAAGAAGAGTGGCACAGAAGGGTGATTGAGCATTGCATAAAGAAAAGACTGCAATGGAGCAGTTGCTTTGCTCGAAAAATGTGCAAGGAAAGTGAATATTATGAAGACATGATGCGGTACTTGCGAAGGAATCTAGCGCTGTTTCCCTATCACCTTGCAGAGTATGTTTGCCGTGTAATGAGGGTATCACCTTTCCGATACTACTGTGATATGGTAGAAAAGCAACCGTATGATAGCATCCCCAATTTTAGTGCGGCAGATGCCTTGAGACTTACAGGGATCGGAAGAAACGAAATTATTGATATAATGAACAAGTGCAGATCTAAGAAAATTATGTGGAAGCTGAACAAGTCAATTGCTAAGGAACTTTTACCTACACAACCTGTGGATTTTGCTATTGAACCGTGGTGGGGAATTTGTCTAGTGAATTTTACACTGGAAGAATTTAAGAAACTTTCAGAGGAAGAAATGGCTACGATAGATAAAGTATGTAAAGAGGAAGCAAATTCTTATATCCTATTCGATCCTGATATTATTAAGGGTCTTCATCAACGAGTATTAATATACTTTGATGTTCCTGTGTATCCCGATGATCGTTTTAAAGTTTCCAGGCTTGAAGGATTTGTTTCCAACAGAGAGCAATCTTATGAAGATCCTATAGAGAATCAGCAAGACAACCTCTCTCACCCTTGCGTTGTAACTCCCCTAACTCAAGACTGCATAAAAAGCAATAGGAAAACTTCCGAAATAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAM91_C FAM91_N

Protein Analysis

287

Amino Acids

33.97

Weight (kDa)

6.67

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAM91_N	PF14647	17 - 250	6.9e-71	FAM91 N-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220 AT1G35220
fragaria_vesca	FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450 FvH4_5g36450
malus_domestica	MD08G1188800.v1.1 MD15G1376600.v1.1 MD15G1376700.v1.1
prunus_persica	Prupe.1G523400_v2.0.a1
pyrus_communis	pycom08g16250
rosa_chinensis	RchiOBHm_Chr7g0238491
rosa_laevigata	RLG00000000910
rosa_multiflora	Rmu_sc0001536.1_g000012 Rmu_sc0025040.1_g000006
rosa_roxburghii	Rroxscaffold_3G00223010 Rroxscaffold_3G00223110
rosa_rugosa	Rorug07G0312600 Rorug07G0312700 Rorug07G0312800
rosa_samantha	Rh7AG467600 Rh7BG438300 Rh7CG485600 Rh7DG454100
rosa_wichuraiana	Rw7G038830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	2 cut(s)	223, 362
AclWI	GGATC	3 cut(s)	395, 626, 755
AcsI	RAATTY	4 cut(s)	522, 535, 551, 613
AfaI	GTAC	1 cut(s)	227
AfeI	AGCGCT	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgsI	TTSAA	2 cut(s)	509, 725
AjnI	CCWGG	2 cut(s)	65, 716
AluBI	AGCT	1 cut(s)	451
AluI	AGCT	1 cut(s)	451
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	3 cut(s)	395, 626, 755
AlwNI	CAGNNNCTG	1 cut(s)	37
Aor51HI	AGCGCT	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	4 cut(s)	522, 535, 551, 613
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AseI	ATTAAT	1 cut(s)	668
AspLEI	GCGC	1 cut(s)	247
AsuHPI	GGTGA	4 cut(s)	142, 251, 288, 785
AsuII	TTCGAA	1 cut(s)	107
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BbsI	GAAGAC	3 cut(s)	96, 219, 644
BbvI	GCAGC	1 cut(s)	24
BceAI	ACGGC	2 cut(s)	101, 264
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciT130I	CCWGG	2 cut(s)	67, 718
BciVI	GTATCC	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	2 cut(s)	242, 530
BfmI	CTRYAG	1 cut(s)	765
BfoI	RGCGCY	1 cut(s)	248
BfuI	GTATCC	1 cut(s)	702
BglII	AGATCT	1 cut(s)	428
BisI	GCNGC	2 cut(s)	38, 363
BlsI	GCNGC	2 cut(s)	39, 364
Bme1390I	CCNGG	2 cut(s)	67, 718
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	2 cut(s)	67, 718
BmsI	GCATC	4 cut(s)	13, 210, 354, 358
BpiI	GAAGAC	3 cut(s)	96, 219, 644
Bpu10I	CCTNAGC	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	107
BpuEI	CTTGAG	2 cut(s)	394, 804
BsaJI	CCNNGG	3 cut(s)	65, 66, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	549
Bse3DI	GCAATG	2 cut(s)	139, 167
BseBI	CCWGG	2 cut(s)	67, 718
BseDI	CCNNGG	3 cut(s)	65, 66, 512
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMI	GCAATG	2 cut(s)	139, 167
BseNI	ACTGG	1 cut(s)	549
BseXI	GCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	445
Bsh1285I	CGRYCG	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	107
Bsp143I	GATC	6 cut(s)	21, 387, 428, 631, 700, 760
BspACI	CCGC	2 cut(s)	223, 362
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	3 cut(s)	395, 626, 755
BspT104I	TTCGAA	1 cut(s)	107
BsrDI	GCAATG	2 cut(s)	139, 167
BsrI	ACTGG	1 cut(s)	549
BssECI	CCNNGG	3 cut(s)	65, 66, 512
BssMI	GATC	6 cut(s)	21, 387, 428, 631, 700, 760
Bst2UI	CCWGG	2 cut(s)	67, 718
Bst4CI	ACNGT	4 cut(s)	33, 314, 336, 513
Bst6I	CTCTTC	1 cut(s)	108
BstBI	TTCGAA	1 cut(s)	107
BstDEI	CTNAG	2 cut(s)	432, 468
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	1 cut(s)	247
BstKTI	GATC	6 cut(s)	24, 390, 431, 634, 703, 763
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	6 cut(s)	21, 387, 428, 631, 700, 760
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	229, 368, 834
BstNI	CCWGG	2 cut(s)	67, 718
BstSCI	CCNGG	2 cut(s)	65, 716
BstSFI	CTRYAG	1 cut(s)	765
BstV1I	GCAGC	1 cut(s)	24
BstV2I	GAAGAC	3 cut(s)	96, 219, 644
BstX2I	RGATCY	2 cut(s)	428, 760
BstYI	RGATCY	2 cut(s)	428, 760
BsuI	GTATCC	1 cut(s)	702
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	542
CaiI	CAGNNNCTG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	4 cut(s)	88, 451, 581, 721
CviKI_1	RGCY	4 cut(s)	88, 451, 581, 721
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	2 cut(s)	432, 468
DpnI	GATC	6 cut(s)	23, 389, 430, 633, 702, 762
DpnII	GATC	6 cut(s)	21, 387, 428, 631, 700, 760
DraI	TTTAAA	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco47III	AGCGCT	1 cut(s)	246
EcoRII	CCWGG	2 cut(s)	65, 716
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	220
FatI	CATG	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	38, 363
FokI	GGATG	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	38, 363
FspBI	CTAG	2 cut(s)	242, 530
GlaI	GCGC	1 cut(s)	246
GluI	GCNGC	2 cut(s)	38, 363
HaeII	RGCGCY	1 cut(s)	248
HapII	CCGG	1 cut(s)	14
HhaI	GCGC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	245
HinP1I	GCGC	1 cut(s)	245
HinfI	GANTC	3 cut(s)	73, 238, 772
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	4 cut(s)	142, 251, 288, 785
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188I	TCNGA	5 cut(s)	305, 392, 568, 853, 863
Hpy188III	TCNNGA	3 cut(s)	635, 695, 821
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	2 cut(s)	22, 100
HpyAV	CCTTC	3 cut(s)	120, 228, 719
HpyCH4III	ACNGT	4 cut(s)	33, 314, 336, 513
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	7 cut(s)	4, 144, 160, 192, 266, 426, 828
HpyF10VI	GCNNNNNNNGC	3 cut(s)	229, 368, 834
HpyF3I	CTNAG	2 cut(s)	432, 468
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	245
Kzo9I	GATC	6 cut(s)	21, 387, 428, 631, 700, 760
LmnI	GCTCC	3 cut(s)	16, 93, 165
Lsp1109I	GCAGC	1 cut(s)	24
LweI	GCATC	4 cut(s)	13, 210, 354, 358
MaeI	CTAG	2 cut(s)	242, 530
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	805
MalI	GATC	6 cut(s)	23, 389, 430, 633, 702, 762
MboI	GATC	6 cut(s)	21, 387, 428, 631, 700, 760
MboII	GAAGA	9 cut(s)	68, 96, 125, 224, 405, 560, 584, 644, 770
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	2 cut(s)	428, 760
MluCI	AATT	9 cut(s)	48, 352, 402, 438, 462, 522, 535, 551, 613
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	762
MnlI	CCTC	5 cut(s)	19, 282, 562, 598, 797
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	51, 555, 645, 668, 708
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	67, 718
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	2 cut(s)	67, 718
MwoI	GCNNNNNNNGC	3 cut(s)	229, 368, 834
NdeII	GATC	6 cut(s)	21, 387, 428, 631, 700, 760
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	107
PasI	CCCWGGG	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 396
PctI	GAATGC	1 cut(s)	65
PfeI	GAWTC	2 cut(s)	238, 772
PflFI	GACNNNGTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	39, 364
Ple19I	CGATCG	1 cut(s)	24
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PshBI	ATTAAT	1 cut(s)	668
Psp6I	CCWGG	2 cut(s)	65, 716
PspGI	CCWGG	2 cut(s)	65, 716
PspN4I	GGNNCC	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	428, 760
PsyI	GACNNNGTC	1 cut(s)	100
PvuI	CGATCG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	5 cut(s)	51, 555, 645, 668, 708
SatI	GCNGC	2 cut(s)	38, 363
Sau3AI	GATC	6 cut(s)	21, 387, 428, 631, 700, 760
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	2 cut(s)	67, 718
SetI	ASST	7 cut(s)	101, 264, 301, 453, 484, 493, 789
SfaNI	GCATC	4 cut(s)	13, 210, 354, 358
SfcI	CTRYAG	1 cut(s)	765
SfuI	TTCGAA	1 cut(s)	107
SmlI	CTYRAG	2 cut(s)	373, 819
SmoI	CTYRAG	2 cut(s)	373, 819
Sse9I	AATT	9 cut(s)	48, 352, 402, 438, 462, 522, 535, 551, 613
SsiI	CCGC	2 cut(s)	223, 362
SspI	AATATT	1 cut(s)	206
SspMI	CTAG	2 cut(s)	242, 530
StyD4I	CCNGG	2 cut(s)	65, 716
TaaI	ACNGT	4 cut(s)	33, 314, 336, 513
TaiI	ACGT	1 cut(s)	101
TaqI	TCGA	4 cut(s)	24, 107, 181, 630
TasI	AATT	9 cut(s)	48, 352, 402, 438, 462, 522, 535, 551, 613
TauI	GCSGC	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	238, 772
Tru1I	TTAA	5 cut(s)	51, 555, 645, 668, 708
Tru9I	TTAA	5 cut(s)	51, 555, 645, 668, 708
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	225, 431, 644, 771
TspRI	CASTG	1 cut(s)	549
Tth111I	GACNNNGTC	1 cut(s)	100
VspI	ATTAAT	1 cut(s)	668
XapI	RAATTY	4 cut(s)	522, 535, 551, 613
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	2 cut(s)	242, 530
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.