Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015722

Physical Location & Seq

Genomic Coordinates Reverse (-)

18570577 .. 18571844

Gene Structure 1268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTGGCCTCGTCCTCATCGTTGTTTGAGTACTCCTCGGACTCGTCCTCGTCGTCTTCGTCTGTATCTCGCCGCAGACATCATCCCCACCACCGCAGTCGCCGAGATAAAGACAAAGATGCCCTCAAGATCCGAAAAAAGACCAGTCGCTCCAACACTAAACGACGTCGCAGACACCGCCACCGCCACTCCTCGTCGGATTCTTACTCTTCCTCCTCTCCTTCCGATTACAGGTCAATTTACAAAACCCTTCTTTTATTTTTTGGGCTTATGTATGGTGGCTTTAATTTTGTTATCAGTTTTATCCTCTGTTTGGTTAGGTTGTTGGATTGGTGTTTGTACTATAGAAACTTAGATGTGCTTACCCCCTTTTCATTGACATCCACGGATACAATAGTTGTTAGAGCTTATGAGGCAATAATGGATTGTGTGAGAGCTGTAATTGTTGGGGCGGAGGGTACTCCTTACCATGATGGTCTCTTCTTCTTTGATGTTTGCTTCCCCAGTGGCTATCCCAATGTACCACCAGTATGTGATAATTTTGAACTCCTAGAATTGATTTGTATCTGTTTACATCTTTGGCCTAACCGGGAACTCTGTTATGCGGAATGTCTACTACCACTCTGGTGGCCTTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

214

Amino Acids

24.71

Weight (kDa)

8.98

Isoelectric Point (pI)

70.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015722)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18330 pycom10g26420 pycom13g04680 pycom14g14050
rosa_laevigata	RLG00000024517 RLG00000030191
rosa_multiflora	Rmu_sc0003130.1_g000014 Rmu_sc0003706.1_g000002 Rmu_sc0004283.1_g000045 Rmu_sc0007734.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083090 Rroxscaffold_6G00394300
rosa_rugosa	Rorug01G0156200.1 Rorug01G0407800
rosa_samantha	Rh4CG277800 Rh4DG262800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	613
AciI	CCGC	6 cut(s)	73, 94, 178, 184, 452, 605
AclWI	GGATC	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	4 cut(s)	32, 341, 460, 522
AfiI	CCNNNNNNNGG	2 cut(s)	231, 313
AgsI	TTSAA	1 cut(s)	545
AleI	CACNNNNGTG	1 cut(s)	625
AluBI	AGCT	2 cut(s)	407, 437
AluI	AGCT	2 cut(s)	407, 437
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	3 cut(s)	6, 581, 629
AsuC2I	CCSGG	1 cut(s)	590
BaeI	ACNNNNGTAYC	2 cut(s)	381, 414
BbsI	GAAGAC	1 cut(s)	48
BccI	CCATC	1 cut(s)	467
BciVI	GTATCC	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	551
BfmI	CTRYAG	1 cut(s)	343
BfuI	GTATCC	1 cut(s)	382
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	590
BmrFI	CCNGG	1 cut(s)	590
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	590
BsaBI	GATNNNNATC	1 cut(s)	563
BsaHI	GRCGYC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	36, 384
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 197, 203, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 313
Bse1I	ACTGG	3 cut(s)	144, 504, 527
Bse8I	GATNNNNATC	1 cut(s)	563
BseDI	CCNNGG	2 cut(s)	36, 384
BseGI	GGATG	2 cut(s)	82, 380
BseJI	GATNNNNATC	1 cut(s)	563
BseLI	CCNNNNNNNGG	2 cut(s)	231, 313
BseNI	ACTGG	3 cut(s)	144, 504, 527
BseRI	GAGGAG	3 cut(s)	25, 181, 205
BshFI	GGCC	3 cut(s)	8, 583, 631
BsiSI	CCGG	1 cut(s)	589
BslI	CCNNNNNNNGG	2 cut(s)	231, 313
BsmAI	GTCTC	1 cut(s)	482
BsnI	GGCC	3 cut(s)	8, 583, 631
Bso31I	GGTCTC	1 cut(s)	482
Bsp143I	GATC	1 cut(s)	129
BspACI	CCGC	6 cut(s)	73, 94, 178, 184, 452, 605
BspANI	GGCC	3 cut(s)	8, 583, 631
BspPI	GGATC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	482
BsrI	ACTGG	3 cut(s)	144, 504, 527
BssECI	CCNNGG	2 cut(s)	36, 384
BssMI	GATC	1 cut(s)	129
BssNI	GRCGYC	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	214, 485
BstACI	GRCGYC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	352
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	82, 380
BstKTI	GATC	1 cut(s)	132
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 413
BstSCI	CCNGG	1 cut(s)	588
BstSFI	CTRYAG	1 cut(s)	343
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	129
BstXI	CCANNNNNNTGG	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	8, 583, 631
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	2 cut(s)	82, 380
BtsIMutI	CAGTG	1 cut(s)	511
Csp6I	GTAC	4 cut(s)	31, 340, 459, 521
CviAII	CATG	1 cut(s)	470
CviJI	RGCY	8 cut(s)	8, 268, 282, 407, 437, 510, 583, 631
CviKI_1	RGCY	8 cut(s)	8, 268, 282, 407, 437, 510, 583, 631
CviQI	GTAC	4 cut(s)	31, 340, 459, 521
DdeI	CTNAG	1 cut(s)	352
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	214, 485
EarI	CTCTTC	2 cut(s)	214, 485
EciI	GGCGGA	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	482
FaeI	CATG	1 cut(s)	473
FaiI	YATR	7 cut(s)	272, 276, 345, 411, 471, 532, 603
FatI	CATG	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	69, 367
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	1 cut(s)	73
HaeIII	GGCC	3 cut(s)	8, 583, 631
HapII	CCGG	1 cut(s)	589
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	473
HinfI	GANTC	2 cut(s)	41, 200
HpaII	CCGG	1 cut(s)	589
Hpy166II	GTNNAC	2 cut(s)	572, 614
Hpy188I	TCNGA	4 cut(s)	40, 134, 199, 226
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	572, 614
Hpy99I	CGWCG	4 cut(s)	55, 168, 171, 199
HpyAV	CCTTC	2 cut(s)	231, 260
HpyCH4IV	ACGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 413
HpyF3I	CTNAG	1 cut(s)	352
HpySE526I	ACGT	1 cut(s)	166
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	6 cut(s)	157, 217, 517, 540, 602, 610
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	551
MaeII	ACGT	1 cut(s)	166
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	4 cut(s)	48, 201, 472, 475
MflI	RGATCY	1 cut(s)	129
MluCI	AATT	5 cut(s)	237, 286, 441, 538, 554
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	3 cut(s)	177, 177, 306
MseI	TTAA	2 cut(s)	285, 640
MslI	CAYNNNNRTG	2 cut(s)	529, 625
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	1 cut(s)	590
MwoI	GCNNNNNNNGC	2 cut(s)	177, 413
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	473
NmeAIII	GCCGAG	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	625
PcsI	WCGNNNNNNNCGW	3 cut(s)	17, 50, 56
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	4 cut(s)	32, 341, 460, 522
RsaNI	GTAC	4 cut(s)	31, 340, 459, 521
RseI	CAYNNNNRTG	2 cut(s)	529, 625
SaqAI	TTAA	2 cut(s)	285, 640
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	590
SetI	ASST	5 cut(s)	169, 236, 323, 409, 439
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	343
SmiMI	CAYNNNNRTG	2 cut(s)	529, 625
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	5 cut(s)	237, 286, 441, 538, 554
SsiI	CCGC	6 cut(s)	73, 94, 178, 184, 452, 605
SspMI	CTAG	1 cut(s)	551
StyD4I	CCNGG	1 cut(s)	588
TaiI	ACGT	1 cut(s)	169
TasI	AATT	5 cut(s)	237, 286, 441, 538, 554
TatI	WGTACW	2 cut(s)	30, 339
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	285, 640
Tru9I	TTAA	2 cut(s)	285, 640
TscAI	CASTG	1 cut(s)	511
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	613
XspI	CTAG	1 cut(s)	551
ZraI	GACGTC	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.