RLG00000030191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015722
Physical Location & Seq
Reverse (-)
57316302 .. 57316699
398 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030191

Sequence Viewer

Length: 318 bp
ATGGGCGGACCGTTATTTGAAGATGTTGCTGTTCTCCATTACCTGTCAGACAGCATACAAAGGACGACAAAGGGGAGACCGCGTTGGGCAGTCTTCTCTCCTCAGATGCCTAAGTCAAGTGGAGAAGAGGATGTTCTCTTCCATGTTTTCAATGTGGGACTGATGTGTCTTAGTTCCCAGCTTCTGGTGTCATCTTGGCGCGGCGCGTGGCGGCGCATCCGAGGTGATCTGGGGGTGAGCCAGGGCTCAGGCGGTAGCCCGCCTGGTAGTGTTTCCGTAGGTCACACTACTGGTGGTATTTGGCACAATTGGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.46

Weight (kDa)

9.76

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 184
AccII CGCG 3 cut(s) 82, 201, 206
AciI CCGC 7 cut(s) 6, 80, 201, 211, 252, 260, 313
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 2 cut(s) 20, 151
AjnI CCWGG 2 cut(s) 240, 262
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 184
AspLEI GCGC 3 cut(s) 201, 206, 216
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 236, 247
AvaII GGWCC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 85
BciT130I CCWGG 2 cut(s) 242, 264
BcoDI GTCTC 1 cut(s) 70
BisI GCNGC 2 cut(s) 202, 212
BlsI GCNGC 2 cut(s) 203, 213
Bme1390I CCNGG 2 cut(s) 242, 264
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmrFI CCNGG 2 cut(s) 242, 264
BmsI GCATC 2 cut(s) 96, 225
BpiI GAAGAC 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 247
BsaI GGTCTC 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 220, 241
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 2 cut(s) 242, 264
BseDI CCNNGG 2 cut(s) 220, 241
BseGI GGATG 2 cut(s) 136, 216
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 116, 261
BseNI ACTGG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 90
BseYI CCCAGC 1 cut(s) 177
Bsh1236I CGCG 3 cut(s) 82, 201, 206
BslFI GGGAC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 7 cut(s) 6, 80, 201, 211, 252, 260, 313
BspCNI CTCAG 2 cut(s) 115, 260
BspFNI CGCG 3 cut(s) 82, 201, 206
BspTNI GGTCTC 1 cut(s) 70
BsrI ACTGG 1 cut(s) 295
BssECI CCNNGG 2 cut(s) 220, 241
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 2 cut(s) 242, 264
Bst4CI ACNGT 1 cut(s) 12
Bst6I CTCTTC 2 cut(s) 120, 143
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 4 cut(s) 102, 111, 170, 247
BstF5I GGATG 2 cut(s) 136, 216
BstFNI CGCG 3 cut(s) 82, 201, 206
BstHHI GCGC 3 cut(s) 201, 206, 216
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNI CCWGG 2 cut(s) 242, 264
BstSCI CCNGG 2 cut(s) 240, 262
BstUI CGCG 3 cut(s) 82, 201, 206
BstV2I GAAGAC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 136, 216
Cac8I GCNNGC 1 cut(s) 260
CaiI CAGNNNCTG 1 cut(s) 184
CfoI GCGC 3 cut(s) 201, 206, 216
Cfr13I GGNCC 1 cut(s) 8
CpoI CGGWCCG 1 cut(s) 8
CspI CGGWCCG 1 cut(s) 8
CviAII CATG 1 cut(s) 143
CviJI RGCY 4 cut(s) 181, 240, 246, 258
CviKI_1 RGCY 4 cut(s) 181, 240, 246, 258
DdeI CTNAG 4 cut(s) 102, 111, 170, 247
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
DrdI GACNNNNNNGTC 1 cut(s) 165
DseDI GACNNNNNNGTC 1 cut(s) 165
Eam1104I CTCTTC 2 cut(s) 120, 143
EarI CTCTTC 2 cut(s) 120, 143
EciI GGCGGA 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 8
EcoRII CCWGG 2 cut(s) 240, 262
EcoT38I GRGCYC 1 cut(s) 248
FaeI CATG 1 cut(s) 146
FaiI YATR 2 cut(s) 56, 144
FaqI GGGAC 1 cut(s) 171
FatI CATG 1 cut(s) 142
FauI CCCGC 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 202, 212
FokI GGATG 2 cut(s) 143, 203
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 202, 212
GlaI GCGC 3 cut(s) 200, 205, 215
GluI GCNGC 2 cut(s) 202, 212
GsaI CCCAGC 1 cut(s) 181
HhaI GCGC 3 cut(s) 201, 206, 216
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 3 cut(s) 199, 204, 214
HinP1I GCGC 3 cut(s) 199, 204, 214
HphI GGTGA 2 cut(s) 236, 247
Hpy188I TCNGA 3 cut(s) 49, 105, 221
HpyCH4III ACNGT 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 4 cut(s) 102, 111, 170, 247
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 3 cut(s) 199, 204, 214
Kzo9I GATC 1 cut(s) 226
LweI GCATC 2 cut(s) 96, 225
MaeIII GTNAC 1 cut(s) 281
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 4 cut(s) 32, 85, 130, 137
MfeI CAATTG 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 1 cut(s) 307
MnlI CCTC 3 cut(s) 111, 121, 215
MspR9I CCNGG 2 cut(s) 242, 264
MteI GCGCNGCGC 1 cut(s) 202
MunI CAATTG 1 cut(s) 307
MvaI CCWGG 2 cut(s) 242, 264
MvnI CGCG 3 cut(s) 82, 201, 206
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 281
PflMI CCANNNNNTGG 1 cut(s) 184
PkrI GCNGC 2 cut(s) 203, 213
Psp6I CCWGG 2 cut(s) 240, 262
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 2 cut(s) 240, 262
PspPI GGNCC 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 184
Rsr2I CGGWCCG 1 cut(s) 8
RsrII CGGWCCG 1 cut(s) 8
SatI GCNGC 2 cut(s) 202, 212
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 8
ScrFI CCNGG 2 cut(s) 242, 264
SduI GDGCHC 1 cut(s) 248
SetI ASST 4 cut(s) 45, 183, 226, 283
SfaNI GCATC 2 cut(s) 96, 225
SinI GGWCC 1 cut(s) 8
Sse9I AATT 1 cut(s) 307
SsiI CCGC 7 cut(s) 6, 80, 201, 211, 252, 260, 313
StyD4I CCNGG 2 cut(s) 240, 262
TaaI ACNGT 1 cut(s) 12
TasI AATT 1 cut(s) 307
TauI GCSGC 2 cut(s) 204, 214
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.