Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0015722

Physical Location & Seq

Genomic Coordinates Reverse (-)

27769053 .. 27774596

Gene Structure 5544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g26420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGATCGTGTGAGAGCTGTAATTGTTGGGGCGGAGGCTACTCCTTACCATGATGGTCTCTTCTTCTTTGATGTTTGCTTCCCCAGTGACTATCCCAATGTGCCACCGGAGTTTGTCAAGGAGAAAGTTCGTGAACGAAATAAATCTAATCGAGAGGTGGAGGCGTCGACTAATCAGCTGGCTGATCATCAAATGCCAGTGTATAATCTTGCATCGAAGATTCTTTGTTGGGTTATCAATGTATCATTGAAGGTAGTGTGGTGGATGATCTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

92

Amino Acids

10.57

Weight (kDa)

6.06

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	3 - 38	1.3e-07	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015722)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18330 pycom10g26420 pycom13g04680 pycom14g14050
rosa_laevigata	RLG00000024517 RLG00000030191
rosa_multiflora	Rmu_sc0003130.1_g000014 Rmu_sc0003706.1_g000002 Rmu_sc0004283.1_g000045 Rmu_sc0007734.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083090 Rroxscaffold_6G00394300
rosa_rugosa	Rorug01G0156200.1 Rorug01G0407800
rosa_samantha	Rh4CG277800 Rh4DG262800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	1 cut(s)	12
AcyI	GRCGYC	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	250
AluBI	AGCT	2 cut(s)	17, 178
AluI	AGCT	2 cut(s)	17, 178
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	12
BccI	CCATC	1 cut(s)	47
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	62
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	106
Bse1I	ACTGG	2 cut(s)	84, 197
BseGI	GGATG	1 cut(s)	270
BseNI	ACTGG	2 cut(s)	84, 197
BsiSI	CCGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	62
Bsp143I	GATC	3 cut(s)	4, 184, 267
BspACI	CCGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	84, 197
BssMI	GATC	3 cut(s)	4, 184, 267
BssNI	GRCGYC	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	270
BstKTI	GATC	3 cut(s)	7, 187, 270
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	4, 184, 267
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	91, 204
Cac8I	GCNNGC	1 cut(s)	180
CseI	GACGC	1 cut(s)	153
CviAII	CATG	1 cut(s)	50
CviJI	RGCY	4 cut(s)	17, 38, 178, 182
CviKI_1	RGCY	4 cut(s)	17, 38, 178, 182
DpnI	GATC	3 cut(s)	6, 186, 269
DpnII	GATC	3 cut(s)	4, 184, 267
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	62
FaeI	CATG	1 cut(s)	53
FaiI	YATR	3 cut(s)	51, 204, 274
FatI	CATG	1 cut(s)	49
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	167
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	53
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	220
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	134, 168
Hpy188III	TCNNGA	2 cut(s)	131, 152
Hpy8I	GTNNAC	2 cut(s)	134, 168
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	212
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	53
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	4, 184, 267
LpnPI	CCDG	4 cut(s)	97, 120, 164, 210
LweI	GCATC	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	6, 186, 269
MboI	GATC	3 cut(s)	4, 184, 267
MboII	GAAGA	3 cut(s)	52, 55, 229
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	3 cut(s)	28, 148, 154
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	1 cut(s)	107
NdeII	GATC	3 cut(s)	4, 184, 267
NlaIII	CATG	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	178
SalI	GTCGAC	1 cut(s)	166
Sau3AI	GATC	3 cut(s)	4, 184, 267
SetI	ASST	4 cut(s)	19, 159, 180, 255
SfaNI	GCATC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	32
TaqI	TCGA	3 cut(s)	151, 167, 215
TasI	AATT	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	220
TscAI	CASTG	2 cut(s)	91, 204
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspRI	CASTG	2 cut(s)	91, 204
XmiI	GTMKAC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.