Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015722

Physical Location & Seq

Genomic Coordinates Forward (+)

5809770 .. 5818423

Gene Structure 8654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTGCTTCGTCCTCGCCACGGAGTTTACGCCACCGCCTTGGCGAGGCGCGTGGCGGCGCTTCGGCGGTGATGCGGGTGAGCGGGGCTCGGGCGGTAGCCCGCCCGGCCATGTTTCCGTAGGTTACACCCTTGGTGGGAGTTGGTACGGTGGCGGAGAAGGAATTGGGGTTTTGGGCAACCGAGAGGTTGTGAGAGACGCCATGAATGAAGAAGCAAGGGCGTCCGAGGCAAAACTCGATGGGAAGCGCAAGTTTATGAACAAGGGCAGAAGAGGAAGTACCAATTTGGGCTGTAATACAATGACAGAGCAAGGTTGGTTAGAAGAGCGGCGGAGGTTAATTAGAGGTGGATTCACTCTGAGGAGATTCACCAGAGGTAGAAGATCTGATCGATCCCTATGTTATAGAGGTGCTCCGGCGCACGGACATCTTCGCCGGATAGAAATCGATCACAATTTGGGAGAAAACGCGGTCATTTTGGAGGTAGCGGAGGACGTTGAGGACGCCGCCGAACGGGAAATGGCTCTCTTCTCTGCTCGATTCTTGCTTAACGAGCGAGCTTCAAGGCCAAGAACATATATGCCAATCTTTCCCATTCCAAGCCCAACCCCAAGTGTGAGTCCGATCTGCATGTTTGTTCGATTTGAGTGGTCAAGTTTTGATCTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.88

Weight (kDa)

9.49

Isoelectric Point (pI)

63.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015722)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18330 pycom10g26420 pycom13g04680 pycom14g14050
rosa_laevigata	RLG00000024517 RLG00000030191
rosa_multiflora	Rmu_sc0003130.1_g000014 Rmu_sc0003706.1_g000002 Rmu_sc0004283.1_g000045 Rmu_sc0007734.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083090 Rroxscaffold_6G00394300
rosa_rugosa	Rorug01G0156200.1 Rorug01G0407800
rosa_samantha	Rh4CG277800 Rh4DG262800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	82, 328
AccII	CGCG	2 cut(s)	50, 470
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	106
AcyI	GRCGYC	3 cut(s)	198, 221, 504
AfaI	GTAC	2 cut(s)	146, 280
AfiI	CCNNNNNNNGG	5 cut(s)	19, 44, 135, 422, 513
AgsI	TTSAA	1 cut(s)	564
AluBI	AGCT	1 cut(s)	560
AluI	AGCT	1 cut(s)	560
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	387
Ama87I	CYCGRG	1 cut(s)	88
AoxI	GGCC	2 cut(s)	106, 566
AspLEI	GCGC	4 cut(s)	50, 60, 249, 421
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	80, 89, 361
AvaI	CYCGRG	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	262, 294
Bbv12I	GWGCWC	1 cut(s)	415
BccI	CCATC	1 cut(s)	233
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	105
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	3 cut(s)	56, 329, 507
BlsI	GCNGC	3 cut(s)	57, 330, 508
Bme1390I	CCNGG	1 cut(s)	105
BmeT110I	CYCGRG	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	2 cut(s)	391, 447
BsaBI	GATNNNNATC	1 cut(s)	443
BsaHI	GRCGYC	3 cut(s)	198, 221, 504
BsaJI	CCNNGG	4 cut(s)	18, 38, 130, 225
Bsc4I	CCNNNNNNNGG	5 cut(s)	19, 44, 135, 422, 513
Bse8I	GATNNNNATC	1 cut(s)	443
BseCI	ATCGAT	2 cut(s)	391, 447
BseDI	CCNNGG	4 cut(s)	18, 38, 130, 225
BseJI	GATNNNNATC	1 cut(s)	443
BseLI	CCNNNNNNNGG	5 cut(s)	19, 44, 135, 422, 513
BseMII	CTCAG	1 cut(s)	350
BseRI	GAGGAG	1 cut(s)	376
Bsh1236I	CGCG	2 cut(s)	50, 470
BshFI	GGCC	2 cut(s)	108, 568
BshVI	ATCGAT	2 cut(s)	391, 447
BsiHKAI	GWGCWC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	3 cut(s)	105, 416, 436
BslI	CCNNNNNNNGG	5 cut(s)	19, 44, 135, 422, 513
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	108, 568
BsoBI	CYCGRG	1 cut(s)	88
Bsp1286I	GDGCHC	2 cut(s)	89, 415
Bsp143I	GATC	6 cut(s)	383, 388, 392, 448, 624, 661
BspANI	GGCC	2 cut(s)	108, 568
BspCNI	CTCAG	1 cut(s)	351
BspDI	ATCGAT	2 cut(s)	391, 447
BspFNI	CGCG	2 cut(s)	50, 470
BspPI	GGATC	1 cut(s)	387
BspQI	GCTCTTC	1 cut(s)	318
BsrBI	CCGCTC	2 cut(s)	82, 328
BssECI	CCNNGG	4 cut(s)	18, 38, 130, 225
BssMI	GATC	6 cut(s)	383, 388, 392, 448, 624, 661
BssNI	GRCGYC	3 cut(s)	198, 221, 504
BssT1I	CCWWGG	2 cut(s)	38, 130
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	3 cut(s)	265, 318, 533
BstACI	GRCGYC	3 cut(s)	198, 221, 504
BstC8I	GCNNGC	2 cut(s)	101, 558
BstDEI	CTNAG	1 cut(s)	359
BstDSI	CCRYGG	1 cut(s)	18
BstENI	CCTNNNNNAGG	1 cut(s)	42
BstFNI	CGCG	2 cut(s)	50, 470
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	4 cut(s)	50, 60, 249, 421
BstKTI	GATC	6 cut(s)	386, 391, 395, 451, 627, 664
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	6 cut(s)	383, 388, 392, 448, 624, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 227, 553
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	103
BstUI	CGCG	2 cut(s)	50, 470
BstX2I	RGATCY	1 cut(s)	383
BstXI	CCANNNNNNTGG	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	383
Bsu15I	ATCGAT	2 cut(s)	391, 447
BsuRI	GGCC	2 cut(s)	108, 568
BsuTUI	ATCGAT	2 cut(s)	391, 447
BtgI	CCRYGG	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	101, 558
CfoI	GCGC	4 cut(s)	50, 60, 249, 421
ClaI	ATCGAT	2 cut(s)	391, 447
CseI	GACGC	3 cut(s)	206, 210, 512
Csp6I	GTAC	2 cut(s)	145, 279
CviAII	CATG	3 cut(s)	110, 202, 631
CviJI	RGCY	8 cut(s)	87, 99, 108, 291, 524, 560, 568, 603
CviKI_1	RGCY	8 cut(s)	87, 99, 108, 291, 524, 560, 568, 603
CviQI	GTAC	2 cut(s)	145, 279
DdeI	CTNAG	1 cut(s)	359
DpnI	GATC	6 cut(s)	385, 390, 394, 450, 626, 663
DpnII	GATC	6 cut(s)	383, 388, 392, 448, 624, 661
EaeI	YGGCCR	1 cut(s)	106
Eam1104I	CTCTTC	3 cut(s)	265, 318, 533
EarI	CTCTTC	3 cut(s)	265, 318, 533
EciI	GGCGGA	2 cut(s)	168, 346
Eco130I	CCWWGG	2 cut(s)	38, 130
Eco24I	GRGCYC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	42
EcoT14I	CCWWGG	2 cut(s)	38, 130
EcoT38I	GRGCYC	1 cut(s)	89
ErhI	CCWWGG	2 cut(s)	38, 130
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	3 cut(s)	113, 205, 634
FaiI	YATR	9 cut(s)	111, 203, 257, 400, 405, 577, 579, 581, 632
FatI	CATG	3 cut(s)	109, 201, 630
FauI	CCCGC	3 cut(s)	67, 75, 108
Fnu4HI	GCNGC	3 cut(s)	56, 329, 507
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	56, 329, 507
GlaI	GCGC	4 cut(s)	49, 59, 248, 420
GluI	GCNGC	3 cut(s)	56, 329, 507
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	108, 568
HapII	CCGG	3 cut(s)	105, 416, 436
HgaI	GACGC	3 cut(s)	206, 210, 512
HhaI	GCGC	4 cut(s)	50, 60, 249, 421
Hin1I	GRCGYC	3 cut(s)	198, 221, 504
Hin1II	CATG	3 cut(s)	113, 205, 634
Hin6I	GCGC	4 cut(s)	48, 58, 247, 419
HinP1I	GCGC	4 cut(s)	48, 58, 247, 419
HinfI	GANTC	4 cut(s)	351, 366, 540, 619
HpaII	CCGG	3 cut(s)	105, 416, 436
HphI	GGTGA	3 cut(s)	80, 89, 361
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	4 cut(s)	226, 360, 388, 624
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	1 cut(s)	630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 227, 553
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	1 cut(s)	495
Hsp92I	GRCGYC	3 cut(s)	198, 221, 504
Hsp92II	CATG	3 cut(s)	113, 205, 634
HspAI	GCGC	4 cut(s)	48, 58, 247, 419
Kzo9I	GATC	6 cut(s)	383, 388, 392, 448, 624, 661
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	1 cut(s)	418
LpnPI	CCDG	4 cut(s)	118, 385, 429, 449
LweI	GCATC	1 cut(s)	61
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	6 cut(s)	385, 390, 394, 450, 626, 663
MbiI	CCGCTC	2 cut(s)	82, 328
MboI	GATC	6 cut(s)	383, 388, 392, 448, 624, 661
MboII	GAAGA	6 cut(s)	221, 282, 335, 393, 422, 520
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	2 cut(s)	89, 415
MluCI	AATT	4 cut(s)	162, 283, 339, 454
MlyI	GAGTC	1 cut(s)	628
MseI	TTAA	2 cut(s)	338, 549
MspI	CCGG	3 cut(s)	105, 416, 436
MspR9I	CCNGG	1 cut(s)	105
MvnI	CGCG	2 cut(s)	50, 470
MwoI	GCNNNNNNNGC	3 cut(s)	105, 227, 553
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	6 cut(s)	383, 388, 392, 448, 624, 661
NlaIII	CATG	3 cut(s)	113, 205, 634
NspI	RCATGY	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	318
PfeI	GAWTC	3 cut(s)	351, 366, 540
PkrI	GCNGC	3 cut(s)	57, 330, 508
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
PsuI	RGATCY	1 cut(s)	383
RsaI	GTAC	2 cut(s)	146, 280
RsaNI	GTAC	2 cut(s)	145, 279
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	338, 549
SatI	GCNGC	3 cut(s)	56, 329, 507
Sau3AI	GATC	6 cut(s)	383, 388, 392, 448, 624, 661
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	2 cut(s)	89, 415
SfaNI	GCATC	1 cut(s)	61
Sse9I	AATT	4 cut(s)	162, 283, 339, 454
StyD4I	CCNGG	1 cut(s)	103
StyI	CCWWGG	2 cut(s)	38, 130
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	5 cut(s)	237, 391, 447, 538, 640
TasI	AATT	4 cut(s)	162, 283, 339, 454
TauI	GCSGC	3 cut(s)	58, 331, 509
TfiI	GAWTC	3 cut(s)	351, 366, 540
Tru1I	TTAA	2 cut(s)	338, 549
Tru9I	TTAA	2 cut(s)	338, 549
TspDTI	ATGAA	3 cut(s)	218, 222, 272
TspGWI	ACGGA	3 cut(s)	35, 106, 438
XagI	CCTNNNNNAGG	1 cut(s)	42
XceI	RCATGY	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.