Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015722

Physical Location & Seq

Genomic Coordinates Reverse (-)

36630502 .. 36632377

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024517

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTTGTTGCCTTCTTCTCCTTGGCATTCTCCGAGCCGGTTTTCGCTGCCTCCGCGGTCGGCGGGAGAGGAGGAGAGATCAGCTGCGATGGCGGAGCCTGGTTGGTTGGTGCACCTCCTGCAGCTGTGGCTACCTGGTCTCCGACCACGGCATCTTCGGATAGGAGGAAGTCGGGGGACATGAACATGCTCTGGGATGGCCTTCTCTGGTGGCGATTTGGTATAGATAACTCCCGCTATCTGCCAGGTGACATACAAAGAGAGTCGGAGGGGAGACCGCATTGGGCAGTCTTCTCTTTTCCGATGCCTAAGTTAGTCGATTTCTCAGCTTCTGGAGCTTCTGGTGCCATCTTGGCGCGGCGCGTCCCAGGTGATCTGAGGGTGAGCTGGGGCTCAGGCGGTAGCCTGCTTGGTGGTGTGTTCGTATGTCACACCGTTTGCGGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

15.72

Weight (kDa)

6.71

Isoelectric Point (pI)

46.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015722)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18330 pycom10g26420 pycom13g04680 pycom14g14050
rosa_laevigata	RLG00000024517 RLG00000030191
rosa_multiflora	Rmu_sc0003130.1_g000014 Rmu_sc0003706.1_g000002 Rmu_sc0004283.1_g000045 Rmu_sc0007734.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083090 Rroxscaffold_6G00394300
rosa_rugosa	Rorug01G0156200.1 Rorug01G0407800
rosa_samantha	Rh4CG277800 Rh4DG262800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	344
AccII	CGCG	3 cut(s)	56, 358, 363
AciI	CCGC	9 cut(s)	54, 56, 63, 93, 235, 278, 358, 399, 441
AjnI	CCWGG	4 cut(s)	98, 134, 244, 367
AluBI	AGCT	5 cut(s)	84, 125, 329, 338, 387
AluI	AGCT	5 cut(s)	84, 125, 329, 338, 387
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	144, 268
Alw44I	GTGCAC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	199
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	47, 84, 122
AspLEI	GCGC	2 cut(s)	358, 363
AsuHPI	GGTGA	3 cut(s)	260, 383, 394
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	34, 71, 134
BccI	CCATC	3 cut(s)	83, 191, 356
BceAI	ACGGC	1 cut(s)	165
BciT130I	CCWGG	4 cut(s)	100, 136, 246, 369
BcoDI	GTCTC	2 cut(s)	144, 268
BfmI	CTRYAG	1 cut(s)	120
BglI	GCCNNNNNGGC	1 cut(s)	353
BisI	GCNGC	5 cut(s)	48, 85, 123, 359, 442
BlsI	GCNGC	5 cut(s)	49, 86, 124, 360, 443
Bme1390I	CCNGG	4 cut(s)	100, 136, 246, 369
BmiI	GGNNCC	2 cut(s)	97, 346
BmrFI	CCNGG	4 cut(s)	100, 136, 246, 369
BmsI	GCATC	2 cut(s)	161, 294
BpiI	GAAGAC	1 cut(s)	283
BpmI	CTGGAG	1 cut(s)	354
Bpu10I	CCTNAGC	1 cut(s)	394
BsaI	GGTCTC	2 cut(s)	144, 268
BsaJI	CCNNGG	4 cut(s)	21, 54, 147, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bse118I	RCCGGY	1 cut(s)	37
BseBI	CCWGG	4 cut(s)	100, 136, 246, 369
BseDI	CCNNGG	4 cut(s)	21, 54, 147, 367
BseGI	GGATG	1 cut(s)	202
BseMII	CTCAG	3 cut(s)	339, 368, 408
BseRI	GAGGAG	2 cut(s)	84, 87
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	34, 71, 134
BseYI	CCCAGC	1 cut(s)	387
Bsh1236I	CGCG	3 cut(s)	56, 358, 363
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	191, 350
BsmAI	GTCTC	2 cut(s)	144, 268
BsmFI	GGGAC	2 cut(s)	191, 350
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	2 cut(s)	144, 268
Bsp1286I	GDGCHC	2 cut(s)	115, 395
Bsp143I	GATC	2 cut(s)	78, 373
BspACI	CCGC	9 cut(s)	54, 56, 63, 93, 235, 278, 358, 399, 441
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	3 cut(s)	338, 369, 407
BspFNI	CGCG	3 cut(s)	56, 358, 363
BspLI	GGNNCC	2 cut(s)	97, 346
BspMAI	CTGCAG	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	344
BspTNI	GGTCTC	2 cut(s)	144, 268
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	4 cut(s)	21, 54, 147, 367
BssMI	GATC	2 cut(s)	78, 373
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	4 cut(s)	100, 136, 246, 369
Bst4CI	ACNGT	1 cut(s)	436
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	4 cut(s)	309, 325, 377, 394
BstDSI	CCRYGG	2 cut(s)	54, 147
BstF5I	GGATG	1 cut(s)	202
BstFNI	CGCG	3 cut(s)	56, 358, 363
BstHHI	GCGC	2 cut(s)	358, 363
BstKTI	GATC	2 cut(s)	81, 376
BstMAI	GTCTC	2 cut(s)	144, 268
BstMBI	GATC	2 cut(s)	78, 373
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	7 cut(s)	53, 90, 119, 128, 335, 344, 353
BstNI	CCWGG	4 cut(s)	100, 136, 246, 369
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	4 cut(s)	98, 134, 244, 367
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	3 cut(s)	56, 358, 363
BstV1I	GCAGC	3 cut(s)	34, 71, 134
BstV2I	GAAGAC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	2 cut(s)	54, 147
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	2 cut(s)	358, 363
Cfr10I	RCCGGY	1 cut(s)	37
Cfr42I	CCGCGG	1 cut(s)	57
CseI	GACGC	1 cut(s)	352
CsiI	ACCWGGT	1 cut(s)	134
CviAII	CATG	2 cut(s)	181, 187
DdeI	CTNAG	4 cut(s)	309, 325, 377, 394
DpnI	GATC	2 cut(s)	80, 375
DpnII	GATC	2 cut(s)	78, 373
EciI	GGCGGA	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	395
Eco31I	GGTCTC	2 cut(s)	144, 268
EcoRII	CCWGG	4 cut(s)	98, 134, 244, 367
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	2 cut(s)	184, 190
FaiI	YATR	5 cut(s)	182, 188, 224, 254, 427
FaqI	GGGAC	2 cut(s)	191, 350
FatI	CATG	2 cut(s)	180, 186
FauI	CCCGC	2 cut(s)	56, 242
Fnu4HI	GCNGC	5 cut(s)	48, 85, 123, 359, 442
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	5 cut(s)	48, 85, 123, 359, 442
GlaI	GCGC	2 cut(s)	357, 362
GluI	GCNGC	5 cut(s)	48, 85, 123, 359, 442
GsaI	CCCAGC	1 cut(s)	391
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	2 cut(s)	358, 363
Hin1II	CATG	2 cut(s)	184, 190
Hin6I	GCGC	2 cut(s)	356, 361
HinP1I	GCGC	2 cut(s)	356, 361
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	3 cut(s)	260, 383, 394
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	6 cut(s)	34, 144, 160, 268, 303, 378
Hpy188III	TCNNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	22, 212
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	2 cut(s)	113, 122
HpyF10VI	GCNNNNNNNGC	7 cut(s)	53, 90, 119, 128, 335, 344, 353
HpyF3I	CTNAG	4 cut(s)	309, 325, 377, 394
Hsp92II	CATG	2 cut(s)	184, 190
HspAI	GCGC	2 cut(s)	356, 361
KspI	CCGCGG	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	78, 373
LmnI	GCTCC	2 cut(s)	95, 335
Lsp1109I	GCAGC	3 cut(s)	34, 71, 134
LweI	GCATC	2 cut(s)	161, 294
MabI	ACCWGGT	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	248, 428
MalI	GATC	2 cut(s)	80, 375
MboI	GATC	2 cut(s)	78, 373
MboII	GAAGA	3 cut(s)	7, 147, 283
MhlI	GDGCHC	2 cut(s)	115, 395
MluCI	AATT	1 cut(s)	445
MlyI	GAGTC	1 cut(s)	272
MmeI	TCCRAC	2 cut(s)	167, 246
MnlI	CCTC	7 cut(s)	61, 62, 65, 126, 159, 262, 372
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	3 cut(s)	56, 84, 125
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	4 cut(s)	100, 136, 246, 369
MteI	GCGCNGCGC	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	4 cut(s)	100, 136, 246, 369
MvnI	CGCG	3 cut(s)	56, 358, 363
MwoI	GCNNNNNNNGC	7 cut(s)	53, 90, 119, 128, 335, 344, 353
NdeII	GATC	2 cut(s)	78, 373
NlaIII	CATG	2 cut(s)	184, 190
NlaIV	GGNNCC	2 cut(s)	97, 346
NmuCI	GTSAC	2 cut(s)	248, 428
NspI	RCATGY	1 cut(s)	190
PctI	GAATGC	1 cut(s)	26
PkrI	GCNGC	5 cut(s)	49, 86, 124, 360, 443
PleI	GAGTC	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	271
Psp6I	CCWGG	4 cut(s)	98, 134, 244, 367
PspFI	CCCAGC	1 cut(s)	387
PspGI	CCWGG	4 cut(s)	98, 134, 244, 367
PspN4I	GGNNCC	2 cut(s)	97, 346
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	332
PvuII	CAGCTG	2 cut(s)	84, 125
RseI	CAYNNNNRTG	1 cut(s)	185
SacII	CCGCGG	1 cut(s)	57
SatI	GCNGC	5 cut(s)	48, 85, 123, 359, 442
Sau3AI	GATC	2 cut(s)	78, 373
SchI	GAGTC	1 cut(s)	272
ScrFI	CCNGG	4 cut(s)	100, 136, 246, 369
SduI	GDGCHC	2 cut(s)	115, 395
SetI	ASST	9 cut(s)	86, 118, 127, 137, 250, 331, 340, 373, 389
SexAI	ACCWGGT	1 cut(s)	134
SfaNI	GCATC	2 cut(s)	161, 294
SfcI	CTRYAG	1 cut(s)	120
Sfr303I	CCGCGG	1 cut(s)	57
SgrBI	CCGCGG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	445
SsiI	CCGC	9 cut(s)	54, 56, 63, 93, 235, 278, 358, 399, 441
StyD4I	CCNGG	4 cut(s)	98, 134, 244, 367
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	436
TaqI	TCGA	1 cut(s)	318
TasI	AATT	1 cut(s)	445
TauI	GCSGC	2 cut(s)	361, 444
TseFI	GTSAC	2 cut(s)	248, 428
TseI	GCWGC	3 cut(s)	47, 84, 122
Tsp45I	GTSAC	2 cut(s)	248, 428
TspDTI	ATGAA	1 cut(s)	197
VneI	GTGCAC	1 cut(s)	111
XceI	RCATGY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.