Rroxscaffold_6G00394300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015722
Physical Location & Seq
Forward (+)
14705395 .. 14706885
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00394300.1

Sequence Viewer

Length: 339 bp
ATGAGGGAAAGAGAGAGACCTTTTATAGGTGAGGAAAGGACCGAGCCTTATCCATGTTTTCGATGTGGGACCGATGTGCTTCGGTCCCCGGCTTCTTTAGCTTCTGCCGCACTCTTGGCTCGGCGCGTCGGCGGTGATTTGGGGGTGCGCCGGAACTCGGGTGGAAGCTCGCTTGGCCGTGTTTTCATAGGTCACCCCTCCGATGTGCCCGACTTGGACATTAAAGAGAGGGAAATCCGAGTGGTCTTCCTTGTCATCTTCACTTCAAACTCTTATCGCCCTGTTCAAACCTTGCCGCAACATTGGAGTGTTGCAAATCGAGTGACTAGATCGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.54

Weight (kDa)

10.21

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 126
AciI CCGC 3 cut(s) 108, 132, 296
AcoI YGGCCR 1 cut(s) 175
AfiI CCNNNNNNNGG 2 cut(s) 26, 157
AgsI TTSAA 2 cut(s) 267, 287
AluBI AGCT 2 cut(s) 101, 168
AluI AGCT 2 cut(s) 101, 168
Alw26I GTCTC 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 157
AoxI GGCC 1 cut(s) 175
AspLEI GCGC 2 cut(s) 126, 150
AspS9I GGNCC 3 cut(s) 39, 69, 84
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 3 cut(s) 41, 146, 185
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 3 cut(s) 39, 69, 84
BaeGI GKGCMC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 238
BceAI ACGGC 2 cut(s) 162, 319
BcnI CCSGG 1 cut(s) 89
BcoDI GTCTC 1 cut(s) 10
BfaI CTAG 1 cut(s) 327
BisI GCNGC 2 cut(s) 108, 296
BlsI GCNGC 2 cut(s) 109, 297
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 3 cut(s) 39, 69, 84
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 3 cut(s) 39, 69, 84
BmiI GGNNCC 2 cut(s) 70, 86
BmrFI CCNGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 238
BpuMI CCSGG 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 157
BseDI CCNNGG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 26, 157
BseSI GKGCMC 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 2 cut(s) 89, 151
BslFI GGGAC 2 cut(s) 70, 82
BslI CCNNNNNNNGG 2 cut(s) 26, 157
BsmAI GTCTC 1 cut(s) 10
BsmFI GGGAC 2 cut(s) 70, 82
BsnI GGCC 1 cut(s) 177
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 1 cut(s) 329
BspACI CCGC 3 cut(s) 108, 132, 296
BspANI GGCC 1 cut(s) 177
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 70, 86
BspTNI GGTCTC 1 cut(s) 10
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 170
BstEII GGTNACC 1 cut(s) 191
BstENI CCTNNNNNAGG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 126
BstHHI GCGC 2 cut(s) 126, 150
BstKTI GATC 1 cut(s) 332
BstMAI GTCTC 1 cut(s) 10
BstMBI GATC 1 cut(s) 329
BstMWI GCNNNNNNNGC 4 cut(s) 98, 107, 116, 174
BstPI GGTNACC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 87
BstSLI GKGCMC 1 cut(s) 210
BstUI CGCG 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 170
CfoI GCGC 2 cut(s) 126, 150
Cfr13I GGNCC 3 cut(s) 39, 69, 84
CseI GACGC 1 cut(s) 115
CviAII CATG 1 cut(s) 54
CviJI RGCY 6 cut(s) 46, 92, 101, 119, 168, 177
CviKI_1 RGCY 6 cut(s) 46, 92, 101, 119, 168, 177
DpnI GATC 1 cut(s) 331
DpnII GATC 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 3 cut(s) 39, 69, 84
Eco88I CYCGRG 1 cut(s) 157
Eco91I GGTNACC 1 cut(s) 191
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoO65I GGTNACC 1 cut(s) 191
FaeI CATG 1 cut(s) 57
FaiI YATR 3 cut(s) 26, 55, 188
FaqI GGGAC 2 cut(s) 70, 82
FatI CATG 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 108, 296
Fsp4HI GCNGC 2 cut(s) 108, 296
FspBI CTAG 1 cut(s) 327
GlaI GCGC 2 cut(s) 125, 149
GluI GCNGC 2 cut(s) 108, 296
HaeIII GGCC 1 cut(s) 177
HapII CCGG 2 cut(s) 89, 151
HgaI GACGC 1 cut(s) 115
HhaI GCGC 2 cut(s) 126, 150
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 2 cut(s) 124, 148
HinP1I GCGC 2 cut(s) 124, 148
HpaII CCGG 2 cut(s) 89, 151
HphI GGTGA 3 cut(s) 41, 146, 185
Hpy188I TCNGA 2 cut(s) 202, 239
Hpy99I CGWCG 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 107, 116, 174
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 2 cut(s) 124, 148
Kzo9I GATC 1 cut(s) 329
LpnPI CCDG 3 cut(s) 102, 164, 294
MaeI CTAG 1 cut(s) 327
MaeIII GTNAC 2 cut(s) 191, 322
MalI GATC 1 cut(s) 331
MboI GATC 1 cut(s) 329
MboII GAAGA 2 cut(s) 238, 250
MhlI GDGCHC 1 cut(s) 210
MnlI CCTC 3 cut(s) 25, 208, 222
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 2 cut(s) 89, 151
MspR9I CCNGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 4 cut(s) 98, 107, 116, 174
NciI CCSGG 1 cut(s) 89
NdeII GATC 1 cut(s) 329
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 2 cut(s) 70, 86
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 191, 322
PkrI GCNGC 2 cut(s) 109, 297
PspEI GGTNACC 1 cut(s) 191
PspN4I GGNNCC 2 cut(s) 70, 86
PspPI GGNCC 3 cut(s) 39, 69, 84
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 2 cut(s) 108, 296
Sau3AI GATC 1 cut(s) 329
Sau96I GGNCC 3 cut(s) 39, 69, 84
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 210
SetI ASST 6 cut(s) 22, 31, 103, 170, 193, 293
SinI GGWCC 3 cut(s) 39, 69, 84
SmiMI CAYNNNNRTG 1 cut(s) 306
SsiI CCGC 3 cut(s) 108, 132, 296
SspMI CTAG 1 cut(s) 327
StyD4I CCNGG 1 cut(s) 87
TaqI TCGA 2 cut(s) 61, 319
TaqII GACCGA 3 cut(s) 56, 72, 86
TauI GCSGC 2 cut(s) 110, 298
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseFI GTSAC 2 cut(s) 191, 322
Tsp45I GTSAC 2 cut(s) 191, 322
TspDTI ATGAA 1 cut(s) 175
VpaK11BI GGWCC 3 cut(s) 39, 69, 84
XagI CCTNNNNNAGG 1 cut(s) 24
XspI CTAG 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.