Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007734.1

Orthogroup ID

OG0015722

Physical Location & Seq

Genomic Coordinates Forward (+)

51854 .. 53734

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007734.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgtttcgtttaacccgggtcgtgtgggcgaaccgctactttgaggatttgatggcctccgctagctgtcacacgagagacagggcgtcagagggagatcgcgttgggcggtcttcacttctccgatgcctaagtgaggagaaggttgatcttcttcttgttttcgatgtgggtttgatgtgcttcgattcccagcgtctggagcttctgatgctatcttggcgtggtgcgtggcggcgcgtcagcggtgatctgggggcgatctggggctcaagcagtagcccgcctggctgtgccctcgcaggtcactcctttggtgagagtcggtacctctggcggtacaatgagtgtggctcattacagctaattatgcttgttctggcacatgtagatacaatcattgttagagtctatgaaacaaggttggatcttttgagagcagtaattgttggagctaagggtactcctttccatgatggtctctttttctttgatgtttccttccccagtgggtaccccaatgtgccaccggtcttaacagcttctagcttaagagctcttgggtatgctggtgaagtagaagggattggtcatgttgtggccttagacaatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

205

Amino Acids

22.73

Weight (kDa)

5.95

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015722)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18330 pycom10g26420 pycom13g04680 pycom14g14050
rosa_laevigata	RLG00000024517 RLG00000030191
rosa_multiflora	Rmu_sc0003130.1_g000014 Rmu_sc0003706.1_g000002 Rmu_sc0004283.1_g000045 Rmu_sc0007734.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083090 Rroxscaffold_6G00394300
rosa_rugosa	Rorug01G0156200.1 Rorug01G0407800
rosa_samantha	Rh4CG277800 Rh4DG262800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	293
Acc65I	GGTACC	2 cut(s)	327, 513
AccB1I	GGYRCC	2 cut(s)	327, 513
AccB7I	CCANNNNNTGG	1 cut(s)	199
AccII	CGCG	2 cut(s)	102, 240
AciI	CCGC	7 cut(s)	34, 60, 109, 235, 246, 284, 337
AclWI	GGATC	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	4 cut(s)	329, 341, 463, 515
AfiI	CCNNNNNNNGG	2 cut(s)	136, 199
AflII	CTTAAG	1 cut(s)	550
AflIII	ACRYGT	1 cut(s)	385
AgeI	ACCGGT	1 cut(s)	529
AhdI	GACNNNNNGTC	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	7 cut(s)	66, 205, 364, 455, 542, 549, 557
AluI	AGCT	7 cut(s)	66, 205, 364, 455, 542, 549, 557
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	2 cut(s)	72, 485
AlwI	GGATC	1 cut(s)	435
AlwNI	CAGNNNCTG	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	2 cut(s)	54, 600
AsiGI	ACCGGT	1 cut(s)	529
Asp718I	GGTACC	2 cut(s)	327, 513
AspLEI	GCGC	1 cut(s)	240
AsuC2I	CCSGG	2 cut(s)	16, 17
AsuHPI	GGTGA	3 cut(s)	260, 329, 584
AsuNHI	GCTAGC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	298
BanI	GGYRCC	2 cut(s)	327, 513
BanII	GRGCYC	2 cut(s)	272, 559
BauI	CACGAG	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	559
BccI	CCATC	2 cut(s)	46, 470
BciT130I	CCWGG	1 cut(s)	288
BcnI	CCSGG	2 cut(s)	16, 17
BcoDI	GTCTC	2 cut(s)	72, 485
BfaI	CTAG	2 cut(s)	63, 546
BfrI	CTTAAG	1 cut(s)	550
BfuAI	ACCTGC	1 cut(s)	293
BglI	GCCNNNNNGGC	1 cut(s)	288
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	3 cut(s)	16, 17, 288
BmeRI	GACNNNNNGTC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	15
BmiI	GGNNCC	2 cut(s)	329, 515
BmrFI	CCNGG	3 cut(s)	16, 17, 288
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	116, 201
BmtI	GCTAGC	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	221
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	16, 17
BsaHI	GRCGYC	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 199
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	136, 199
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	152
BseSI	GKGCMC	1 cut(s)	298
BseYI	CCCAGC	1 cut(s)	192
Bsh1236I	CGCG	2 cut(s)	102, 240
BshFI	GGCC	2 cut(s)	56, 602
BshNI	GGYRCC	2 cut(s)	327, 513
BshTI	ACCGGT	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	2 cut(s)	16, 530
BslI	CCNNNNNNNGG	2 cut(s)	136, 199
BsmAI	GTCTC	2 cut(s)	72, 485
BsnI	GGCC	2 cut(s)	56, 602
Bso31I	GGTCTC	1 cut(s)	485
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	3 cut(s)	272, 298, 559
Bsp143I	GATC	5 cut(s)	97, 148, 250, 261, 427
BspACI	CCGC	7 cut(s)	34, 60, 109, 235, 246, 284, 337
BspANI	GGCC	2 cut(s)	56, 602
BspFNI	CGCG	2 cut(s)	102, 240
BspLI	GGNNCC	2 cut(s)	329, 515
BspMI	ACCTGC	1 cut(s)	293
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	435
BspT107I	GGYRCC	2 cut(s)	327, 513
BspTI	CTTAAG	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	15
BssMI	GATC	5 cut(s)	97, 148, 250, 261, 427
BssNI	GRCGYC	1 cut(s)	86
BssSI	CACGAG	1 cut(s)	73
Bst2BI	CACGAG	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	86
BstAFI	CTTAAG	1 cut(s)	550
BstC8I	GCNNGC	2 cut(s)	64, 284
BstDEI	CTNAG	3 cut(s)	131, 456, 604
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstFNI	CGCG	2 cut(s)	102, 240
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	5 cut(s)	100, 151, 253, 264, 430
BstMAI	GTCTC	2 cut(s)	72, 485
BstMBI	GATC	5 cut(s)	97, 148, 250, 261, 427
BstMWI	GCNNNNNNNGC	5 cut(s)	202, 211, 220, 288, 370
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	14, 15, 286
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	2 cut(s)	102, 240
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	427
BsuRI	GGCC	2 cut(s)	56, 602
BtsIMutI	CAGTG	1 cut(s)	514
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	2 cut(s)	64, 284
CaiI	CAGNNNCTG	1 cut(s)	199
CfoI	GCGC	1 cut(s)	240
Cfr10I	RCCGGY	1 cut(s)	529
Cfr9I	CCCGGG	1 cut(s)	15
CseI	GACGC	3 cut(s)	75, 185, 229
Csp6I	GTAC	4 cut(s)	328, 340, 462, 514
CspAI	ACCGGT	1 cut(s)	529
CspCI	CAANNNNNGTGG	2 cut(s)	331, 366
CviAII	CATG	3 cut(s)	386, 473, 593
CviQI	GTAC	4 cut(s)	328, 340, 462, 514
DdeI	CTNAG	3 cut(s)	131, 456, 604
DpnI	GATC	5 cut(s)	99, 150, 252, 263, 429
DpnII	GATC	5 cut(s)	97, 148, 250, 261, 427
DriI	GACNNNNNGTC	1 cut(s)	85
Eam1105I	GACNNNNNGTC	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	557
Eco24I	GRGCYC	2 cut(s)	272, 559
Eco31I	GGTCTC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	557
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	286
EcoT38I	GRGCYC	2 cut(s)	272, 559
FaeI	CATG	3 cut(s)	389, 476, 596
FaiI	YATR	6 cut(s)	371, 387, 414, 474, 567, 594
FatI	CATG	3 cut(s)	385, 472, 592
FauI	CCCGC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	236
FriOI	GRGCYC	2 cut(s)	272, 559
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	2 cut(s)	63, 546
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	56, 602
HapII	CCGG	2 cut(s)	16, 530
HgaI	GACGC	3 cut(s)	75, 185, 229
HhaI	GCGC	1 cut(s)	240
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	389, 476, 596
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	188, 322, 408
HpaII	CCGG	2 cut(s)	16, 530
HphI	GGTGA	3 cut(s)	260, 329, 584
Hpy188I	TCNGA	3 cut(s)	91, 125, 210
Hpy188III	TCNNGA	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	136, 511, 575
HpyF10VI	GCNNNNNNNGC	5 cut(s)	202, 211, 220, 288, 370
HpyF3I	CTNAG	3 cut(s)	131, 456, 604
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	3 cut(s)	389, 476, 596
HspAI	GCGC	1 cut(s)	238
KpnI	GGTACC	2 cut(s)	331, 517
Kzo9I	GATC	5 cut(s)	97, 148, 250, 261, 427
LmnI	GCTCC	2 cut(s)	202, 452
LweI	GCATC	2 cut(s)	116, 201
MaeI	CTAG	2 cut(s)	63, 546
MaeIII	GTNAC	2 cut(s)	68, 305
MalI	GATC	5 cut(s)	99, 150, 252, 263, 429
MboI	GATC	5 cut(s)	97, 148, 250, 261, 427
MboII	GAAGA	3 cut(s)	105, 143, 146
MflI	RGATCY	1 cut(s)	427
MhlI	GDGCHC	3 cut(s)	272, 298, 559
MluCI	AATT	2 cut(s)	366, 444
MlyI	GAGTC	2 cut(s)	331, 417
MmeI	TCCRAC	2 cut(s)	405, 430
MnlI	CCTC	6 cut(s)	37, 67, 85, 130, 308, 341
MseI	TTAA	4 cut(s)	11, 536, 551, 616
MspA1I	CMGCKG	1 cut(s)	246
MspCI	CTTAAG	1 cut(s)	550
MspI	CCGG	2 cut(s)	16, 530
MspR9I	CCNGG	3 cut(s)	16, 17, 288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	2 cut(s)	102, 240
MwoI	GCNNNNNNNGC	5 cut(s)	202, 211, 220, 288, 370
NciI	CCSGG	2 cut(s)	16, 17
NdeII	GATC	5 cut(s)	97, 148, 250, 261, 427
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	3 cut(s)	389, 476, 596
NlaIV	GGNNCC	2 cut(s)	329, 515
NmuCI	GTSAC	2 cut(s)	68, 305
NspI	RCATGY	1 cut(s)	389
PciI	ACATGT	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	529
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	2 cut(s)	330, 416
PpsI	GAGTC	2 cut(s)	330, 416
PscI	ACATGT	1 cut(s)	385
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	329, 515
PstNI	CAGNNNCTG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	427
RsaI	GTAC	4 cut(s)	329, 341, 463, 515
RsaNI	GTAC	4 cut(s)	328, 340, 462, 514
SacI	GAGCTC	1 cut(s)	559
SaqAI	TTAA	4 cut(s)	11, 536, 551, 616
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	5 cut(s)	97, 148, 250, 261, 427
SchI	GAGTC	2 cut(s)	331, 417
ScrFI	CCNGG	3 cut(s)	16, 17, 288
SduI	GDGCHC	3 cut(s)	272, 298, 559
SfaNI	GCATC	2 cut(s)	116, 201
SmaI	CCCGGG	1 cut(s)	17
SmlI	CTYRAG	2 cut(s)	271, 550
SmoI	CTYRAG	2 cut(s)	271, 550
Sse9I	AATT	2 cut(s)	366, 444
SsiI	CCGC	7 cut(s)	34, 60, 109, 235, 246, 284, 337
SspMI	CTAG	2 cut(s)	63, 546
SstI	GAGCTC	1 cut(s)	559
StyD4I	CCNGG	3 cut(s)	14, 15, 286
TaqI	TCGA	2 cut(s)	165, 186
TasI	AATT	2 cut(s)	366, 444
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	4 cut(s)	11, 536, 551, 616
Tru9I	TTAA	4 cut(s)	11, 536, 551, 616
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	2 cut(s)	68, 305
Tsp45I	GTSAC	2 cut(s)	68, 305
TspDTI	ATGAA	1 cut(s)	429
TspMI	CCCGGG	1 cut(s)	15
TspRI	CASTG	1 cut(s)	514
Van91I	CCANNNNNTGG	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	550
XagI	CCTNNNNNAGG	1 cut(s)	134
XceI	RCATGY	1 cut(s)	389
XmaI	CCCGGG	1 cut(s)	15
XspI	CTAG	2 cut(s)	63, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.