Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0015722

Physical Location & Seq

Genomic Coordinates Reverse (-)

3123903 .. 3124981

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g04680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGTGGCCTCGTCCTCATCGTTGTCTGAGTACTCCTCGGACTCGTCCTCGTCGTCTTCGTCTGTATCTCGCCGCAGACATCATCCCCACCACCGCAGTTGCCGAGATAAAAACAAAGATGCCTTCAAGATCCGAAAAAAGACCAGTCGCTCCAACACTAAACGACGTCGTAGACACCGCCACCGCCACTCCTCGTCGGATTCTTACTCTTCCTCCTCTCCTTCCGATTACAGGTCAATTTACAAAACCCTTCTTTTATTTTTTGGGCTTATGTATGGTGGCTTTAATTTTGTTATCAGTTTTATCCTCTGTTTGGTTAGGCCTCCTTTCTCTCTCGCTCTGTCTCTCAGGCGACTCGCGTTGTCAGCAAGAGTGGAAGATCCCAACGGCGGATTCGGTTCCCAAGCTCCAACGATTCTGTCTGTGGCAAAGAGAATTCAGGAAGAGTGGAAGATCCTGGAGAAGGATTTGCCAGGCAAGTTCTTCCGTTTTTTTATTTTGAATATCCTTTTAGATGTGCTTACCCCCTTTTCATTGACATCCACGGATACAATAGTTGTTAGAGCTTATGAGGCAATAATGGATTGTGTGAGAGCTGTAATTGTTGGGGCGGAGGGTACTCCTTACCATGATGGTCTCTTCTTCTTTGATGTTTGCTTCCCCAGTGGCTATCCCAATGTACCACCAGTATGTGATAATTTTGAACTCCTAGAATTGATTTGTATCTGTTTACATCTTTGGCCTAACCGGGAACTCTGTTATGCGGAATGTCTACTACCACTCTGGTGGCCTTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

267

Amino Acids

30.38

Weight (kDa)

9.27

Isoelectric Point (pI)

72.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015722)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18330 pycom10g26420 pycom13g04680 pycom14g14050
rosa_laevigata	RLG00000024517 RLG00000030191
rosa_multiflora	Rmu_sc0003130.1_g000014 Rmu_sc0003706.1_g000002 Rmu_sc0004283.1_g000045 Rmu_sc0007734.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083090 Rroxscaffold_6G00394300
rosa_rugosa	Rorug01G0156200.1 Rorug01G0407800
rosa_samantha	Rh4CG277800 Rh4DG262800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	169
AccI	GTMKAC	2 cut(s)	172, 772
AccII	CGCG	1 cut(s)	359
AciI	CCGC	7 cut(s)	73, 94, 178, 184, 390, 611, 764
AclWI	GGATC	3 cut(s)	124, 374, 448
AcsI	RAATTY	1 cut(s)	435
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	3 cut(s)	32, 619, 681
AfiI	CCNNNNNNNGG	4 cut(s)	231, 313, 389, 463
AgsI	TTSAA	3 cut(s)	127, 502, 704
AjnI	CCWGG	2 cut(s)	456, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AleI	CACNNNNGTG	1 cut(s)	784
AluBI	AGCT	3 cut(s)	407, 566, 596
AluI	AGCT	3 cut(s)	407, 566, 596
Alw26I	GTCTC	2 cut(s)	348, 641
AlwI	GGATC	3 cut(s)	124, 374, 448
AoxI	GGCC	4 cut(s)	6, 320, 740, 788
ApoI	RAATTY	1 cut(s)	435
AsuC2I	CCSGG	1 cut(s)	749
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BbsI	GAAGAC	1 cut(s)	48
BccI	CCATC	1 cut(s)	626
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	2 cut(s)	458, 474
BciVI	GTATCC	1 cut(s)	541
BcnI	CCSGG	1 cut(s)	749
BcoDI	GTCTC	2 cut(s)	348, 641
BfaI	CTAG	1 cut(s)	710
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	1 cut(s)	73
BlsI	GCNGC	1 cut(s)	74
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	3 cut(s)	458, 474, 749
BmiI	GGNNCC	1 cut(s)	400
BmrFI	CCNGG	3 cut(s)	458, 474, 749
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	48
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	749
BsaBI	GATNNNNATC	1 cut(s)	722
BsaHI	GRCGYC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	641
BsaJI	CCNNGG	2 cut(s)	36, 543
BsaXI	ACNNNNNCTCC	4 cut(s)	173, 197, 203, 227
Bsc4I	CCNNNNNNNGG	4 cut(s)	231, 313, 389, 463
Bse1I	ACTGG	3 cut(s)	144, 663, 686
Bse8I	GATNNNNATC	1 cut(s)	722
BseBI	CCWGG	2 cut(s)	458, 474
BseDI	CCNNGG	2 cut(s)	36, 543
BseGI	GGATG	2 cut(s)	82, 539
BseJI	GATNNNNATC	1 cut(s)	722
BseLI	CCNNNNNNNGG	4 cut(s)	231, 313, 389, 463
BseMII	CTCAG	2 cut(s)	18, 361
BseNI	ACTGG	3 cut(s)	144, 663, 686
BseRI	GAGGAG	3 cut(s)	25, 181, 205
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	4 cut(s)	8, 322, 742, 790
BsiSI	CCGG	1 cut(s)	748
BslI	CCNNNNNNNGG	4 cut(s)	231, 313, 389, 463
BsmAI	GTCTC	2 cut(s)	348, 641
BsnI	GGCC	4 cut(s)	8, 322, 742, 790
Bso31I	GGTCTC	1 cut(s)	641
Bsp143I	GATC	3 cut(s)	129, 379, 453
BspACI	CCGC	7 cut(s)	73, 94, 178, 184, 390, 611, 764
BspANI	GGCC	4 cut(s)	8, 322, 742, 790
BspCNI	CTCAG	2 cut(s)	19, 360
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	400
BspPI	GGATC	3 cut(s)	124, 374, 448
BspTNI	GGTCTC	1 cut(s)	641
BsrI	ACTGG	3 cut(s)	144, 663, 686
BssECI	CCNNGG	2 cut(s)	36, 543
BssMI	GATC	3 cut(s)	129, 379, 453
BssNI	GRCGYC	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	458, 474
Bst6I	CTCTTC	3 cut(s)	214, 438, 644
BstACI	GRCGYC	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	27, 347
BstDSI	CCRYGG	1 cut(s)	543
BstENI	CCTNNNNNAGG	1 cut(s)	461
BstF5I	GGATG	2 cut(s)	82, 539
BstFNI	CGCG	1 cut(s)	359
BstKTI	GATC	3 cut(s)	132, 382, 456
BstMAI	GTCTC	2 cut(s)	348, 641
BstMBI	GATC	3 cut(s)	129, 379, 453
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 572
BstNI	CCWGG	2 cut(s)	458, 474
BstSCI	CCNGG	3 cut(s)	456, 472, 747
BstUI	CGCG	1 cut(s)	359
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	3 cut(s)	129, 379, 453
BstXI	CCANNNNNNTGG	1 cut(s)	786
BstYI	RGATCY	3 cut(s)	129, 379, 453
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	4 cut(s)	8, 322, 742, 790
BtgI	CCRYGG	1 cut(s)	543
BtsCI	GGATG	2 cut(s)	82, 539
BtsIMutI	CAGTG	1 cut(s)	670
Csp6I	GTAC	3 cut(s)	31, 618, 680
CspCI	CAANNNNNGTGG	2 cut(s)	80, 115
CviAII	CATG	1 cut(s)	629
CviQI	GTAC	3 cut(s)	31, 618, 680
DdeI	CTNAG	2 cut(s)	27, 347
DpnI	GATC	3 cut(s)	131, 381, 455
DpnII	GATC	3 cut(s)	129, 379, 453
Eam1104I	CTCTTC	3 cut(s)	214, 438, 644
EarI	CTCTTC	3 cut(s)	214, 438, 644
EciI	GGCGGA	2 cut(s)	405, 626
Eco147I	AGGCCT	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	641
EcoNI	CCTNNNNNAGG	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	435
EcoRII	CCWGG	2 cut(s)	456, 472
FaeI	CATG	1 cut(s)	632
FaiI	YATR	6 cut(s)	272, 276, 570, 630, 691, 762
FatI	CATG	1 cut(s)	628
FblI	GTMKAC	2 cut(s)	172, 772
Fnu4HI	GCNGC	1 cut(s)	73
FokI	GGATG	2 cut(s)	69, 526
Fsp4HI	GCNGC	1 cut(s)	73
FspBI	CTAG	1 cut(s)	710
GluI	GCNGC	1 cut(s)	73
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	4 cut(s)	8, 322, 742, 790
HapII	CCGG	1 cut(s)	748
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	632
HinfI	GANTC	5 cut(s)	41, 200, 354, 393, 415
HpaII	CCGG	1 cut(s)	748
Hpy166II	GTNNAC	3 cut(s)	173, 731, 773
Hpy188I	TCNGA	5 cut(s)	28, 40, 134, 199, 226
Hpy188III	TCNNGA	2 cut(s)	127, 440
Hpy8I	GTNNAC	3 cut(s)	173, 731, 773
Hpy99I	CGWCG	4 cut(s)	55, 168, 171, 199
HpyAV	CCTTC	4 cut(s)	133, 231, 260, 457
HpyCH4IV	ACGT	1 cut(s)	166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 572
HpyF3I	CTNAG	2 cut(s)	27, 347
HpySE526I	ACGT	1 cut(s)	166
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	632
Kzo9I	GATC	3 cut(s)	129, 379, 453
LmnI	GCTCC	2 cut(s)	155, 412
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	1 cut(s)	166
MalI	GATC	3 cut(s)	131, 381, 455
MboI	GATC	3 cut(s)	129, 379, 453
MboII	GAAGA	8 cut(s)	48, 201, 389, 455, 463, 475, 631, 634
MflI	RGATCY	3 cut(s)	129, 379, 453
MluCI	AATT	6 cut(s)	237, 286, 435, 600, 697, 713
MlyI	GAGTC	2 cut(s)	35, 348
MmeI	TCCRAC	3 cut(s)	177, 177, 434
MseI	TTAA	2 cut(s)	285, 799
MslI	CAYNNNNRTG	2 cut(s)	688, 784
MspI	CCGG	1 cut(s)	748
MspR9I	CCNGG	3 cut(s)	458, 474, 749
MvaI	CCWGG	2 cut(s)	458, 474
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	365, 572
NciI	CCSGG	1 cut(s)	749
NdeII	GATC	3 cut(s)	129, 379, 453
NlaIII	CATG	1 cut(s)	632
NlaIV	GGNNCC	1 cut(s)	400
NmeAIII	GCCGAG	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	784
PceI	AGGCCT	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	3 cut(s)	17, 50, 56
PfeI	GAWTC	3 cut(s)	200, 393, 415
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	1 cut(s)	74
PleI	GAGTC	2 cut(s)	35, 348
PpsI	GAGTC	2 cut(s)	35, 348
Psp6I	CCWGG	2 cut(s)	456, 472
PspGI	CCWGG	2 cut(s)	456, 472
PspN4I	GGNNCC	1 cut(s)	400
PsuI	RGATCY	3 cut(s)	129, 379, 453
RsaI	GTAC	3 cut(s)	32, 619, 681
RsaNI	GTAC	3 cut(s)	31, 618, 680
RseI	CAYNNNNRTG	2 cut(s)	688, 784
SaqAI	TTAA	2 cut(s)	285, 799
SatI	GCNGC	1 cut(s)	73
Sau3AI	GATC	3 cut(s)	129, 379, 453
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	2 cut(s)	35, 348
ScrFI	CCNGG	3 cut(s)	458, 474, 749
SetI	ASST	5 cut(s)	169, 236, 409, 568, 598
SfaNI	GCATC	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	688, 784
Sse9I	AATT	6 cut(s)	237, 286, 435, 600, 697, 713
SseBI	AGGCCT	1 cut(s)	322
SsiI	CCGC	7 cut(s)	73, 94, 178, 184, 390, 611, 764
SspMI	CTAG	1 cut(s)	710
StuI	AGGCCT	1 cut(s)	322
StyD4I	CCNGG	3 cut(s)	456, 472, 747
TaiI	ACGT	1 cut(s)	169
TasI	AATT	6 cut(s)	237, 286, 435, 600, 697, 713
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	3 cut(s)	200, 393, 415
Tru1I	TTAA	2 cut(s)	285, 799
Tru9I	TTAA	2 cut(s)	285, 799
TscAI	CASTG	1 cut(s)	670
TspDTI	ATGAA	1 cut(s)	522
TspGWI	ACGGA	2 cut(s)	476, 560
TspRI	CASTG	1 cut(s)	670
XagI	CCTNNNNNAGG	1 cut(s)	461
XapI	RAATTY	1 cut(s)	435
XmiI	GTMKAC	2 cut(s)	172, 772
XspI	CTAG	1 cut(s)	710
ZraI	GACGTC	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.