Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003706.1

Orthogroup ID

OG0015722

Physical Location & Seq

Genomic Coordinates Forward (+)

7450 .. 8333

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003706.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgcgcgagtggaaaattttggagaatggccttccggacatctacgtgcgcgggtatgagacacgcgtcgacctcatgagggcagtgattgttggagcagccggcacaccttaccacgaaggcctctttttcttcgacatcaagttcccgcccgattatccgaaccacccgccacaagtccattaccggtcgcacaggttgaataaacccgtacataggtccgaaaggactagggctgggcatttaagcccgaaaaccgaaccttcctcacggccaccatctcaccgatctcatcgccctgtcttcactcgtcccttacctttcgctttggcccgctcagatttccagaatttcttcctctctccaattggatcgtcctcttccatggctcaagcggttcgctcttcctctcctgcccgcggtggtcctttgcttggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

146

Amino Acids

16.5

Weight (kDa)

10.64

Isoelectric Point (pI)

63.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015722)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18330 pycom10g26420 pycom13g04680 pycom14g14050
rosa_laevigata	RLG00000024517 RLG00000030191
rosa_multiflora	Rmu_sc0003130.1_g000014 Rmu_sc0003706.1_g000002 Rmu_sc0004283.1_g000045 Rmu_sc0007734.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083090 Rroxscaffold_6G00394300
rosa_rugosa	Rorug01G0156200.1 Rorug01G0407800
rosa_samantha	Rh4CG277800 Rh4DG262800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	336
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	4 cut(s)	6, 51, 66, 420
AccIII	TCCGGA	1 cut(s)	34
AciI	CCGC	7 cut(s)	51, 149, 170, 334, 395, 418, 420
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	15, 349
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	79, 216, 419, 434
AflIII	ACRYGT	1 cut(s)	64
AgeI	ACCGGT	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	379
Aor13HI	TCCGGA	1 cut(s)	34
AoxI	GGCC	4 cut(s)	28, 121, 272, 330
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	15, 349
AsiGI	ACCGGT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	2 cut(s)	6, 51
AspS9I	GGNCC	3 cut(s)	219, 331, 425
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	219, 425
BbsI	GAAGAC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	1 cut(s)	231
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme18I	GGWCC	2 cut(s)	219, 425
BmgT120I	GGNCC	3 cut(s)	219, 331, 425
BoxI	GACNNNNGTC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	375
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	384, 418
BsaWI	WCCGGW	2 cut(s)	34, 186
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 216, 419, 434
Bse118I	RCCGGY	2 cut(s)	101, 186
BseAI	TCCGGA	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	384, 418
BseLI	CCNNNNNNNGG	4 cut(s)	79, 216, 419, 434
BseMII	CTCAG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	236
Bsh1236I	CGCG	4 cut(s)	6, 51, 66, 420
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	30, 123, 274, 332
BshTI	ACCGGT	1 cut(s)	186
BsiEI	CGRYCG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	35, 102, 187
BslFI	GGGAC	1 cut(s)	297
BslI	CCNNNNNNNGG	4 cut(s)	79, 216, 419, 434
BsmAI	GTCTC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	297
BsnI	GGCC	4 cut(s)	30, 123, 274, 332
Bsp13I	TCCGGA	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	287, 371
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	7 cut(s)	51, 149, 170, 334, 395, 418, 420
BspANI	GGCC	4 cut(s)	30, 123, 274, 332
BspCNI	CTCAG	1 cut(s)	350
BspEI	TCCGGA	1 cut(s)	34
BspFNI	CGCG	4 cut(s)	6, 51, 66, 420
BspHI	TCATGA	1 cut(s)	75
BspPI	GGATC	1 cut(s)	379
BspQI	GCTCTTC	1 cut(s)	409
BsrBI	CCGCTC	1 cut(s)	336
BsrFI	RCCGGY	2 cut(s)	101, 186
BssAI	RCCGGY	2 cut(s)	101, 186
BssECI	CCNNGG	2 cut(s)	384, 418
BssMI	GATC	2 cut(s)	287, 371
BssT1I	CCWWGG	1 cut(s)	384
Bst6I	CTCTTC	2 cut(s)	385, 409
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	3 cut(s)	103, 334, 418
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	2 cut(s)	384, 418
BstFNI	CGCG	4 cut(s)	6, 51, 66, 420
BstHHI	GCGC	2 cut(s)	6, 51
BstKTI	GATC	2 cut(s)	290, 374
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	2 cut(s)	287, 371
BstMCI	CGRYCG	1 cut(s)	191
BstPAI	GACNNNNGTC	1 cut(s)	65
BstUI	CGCG	4 cut(s)	6, 51, 66, 420
BstV1I	GCAGC	1 cut(s)	110
BstV2I	GAAGAC	1 cut(s)	295
BsuRI	GGCC	4 cut(s)	30, 123, 274, 332
BtgI	CCRYGG	2 cut(s)	384, 418
BtgZI	GCGATG	1 cut(s)	278
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	103, 334, 418
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	2 cut(s)	6, 51
Cfr10I	RCCGGY	2 cut(s)	101, 186
Cfr13I	GGNCC	3 cut(s)	219, 331, 425
Cfr42I	CCGCGG	1 cut(s)	421
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	212
CspAI	ACCGGT	1 cut(s)	186
CviAII	CATG	2 cut(s)	76, 385
CviJI	RGCY	8 cut(s)	30, 101, 123, 236, 249, 274, 332, 389
CviKI_1	RGCY	8 cut(s)	30, 101, 123, 236, 249, 274, 332, 389
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	2 cut(s)	289, 373
DpnII	GATC	2 cut(s)	287, 371
EaeI	YGGCCR	1 cut(s)	272
Eam1104I	CTCTTC	2 cut(s)	385, 409
EarI	CTCTTC	2 cut(s)	385, 409
Eco130I	CCWWGG	1 cut(s)	384
Eco147I	AGGCCT	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	219, 425
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	79, 388
FaiI	YATR	4 cut(s)	57, 77, 216, 386
FaqI	GGGAC	1 cut(s)	297
FatI	CATG	2 cut(s)	75, 384
FauI	CCCGC	5 cut(s)	44, 156, 177, 341, 425
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	2 cut(s)	5, 50
GluI	GCNGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	240
HaeIII	GGCC	4 cut(s)	30, 123, 274, 332
HapII	CCGG	3 cut(s)	35, 102, 187
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	2 cut(s)	6, 51
Hin1II	CATG	2 cut(s)	79, 388
Hin6I	GCGC	2 cut(s)	4, 49
HinP1I	GCGC	2 cut(s)	4, 49
HincII	GTYRAC	1 cut(s)	70
HindII	GTYRAC	1 cut(s)	70
HpaII	CCGG	3 cut(s)	35, 102, 187
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	3 cut(s)	162, 223, 340
Hpy188III	TCNNGA	3 cut(s)	35, 76, 346
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	41, 113, 273
HpyCH4IV	ACGT	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	337
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	79, 388
HspAI	GCGC	2 cut(s)	4, 49
Kpn2I	TCCGGA	1 cut(s)	34
KroI	GCCGGC	1 cut(s)	101
KroNI	GCCGGC	1 cut(s)	103
KspI	CCGCGG	1 cut(s)	421
Kzo9I	GATC	2 cut(s)	287, 371
LguI	GCTCTTC	1 cut(s)	409
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	8 cut(s)	48, 115, 181, 200, 222, 312, 359, 426
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	45
MalI	GATC	2 cut(s)	289, 373
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	2 cut(s)	287, 371
MboII	GAAGA	5 cut(s)	124, 295, 346, 372, 396
MfeI	CAATTG	1 cut(s)	366
MluCI	AATT	3 cut(s)	15, 349, 366
MluI	ACGCGT	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	72, 83, 134, 277, 368, 388, 418
MroI	TCCGGA	1 cut(s)	34
MroNI	GCCGGC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	420
MspI	CCGG	3 cut(s)	35, 102, 187
MunI	CAATTG	1 cut(s)	366
MvnI	CGCG	4 cut(s)	6, 51, 66, 420
NaeI	GCCGGC	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	2 cut(s)	287, 371
NgoMIV	GCCGGC	1 cut(s)	101
NlaIII	CATG	2 cut(s)	79, 388
PagI	TCATGA	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	123
PciSI	GCTCTTC	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	353
PinAI	ACCGGT	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	46
PshAI	GACNNNNGTC	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	236
PspPI	GGNCC	3 cut(s)	219, 331, 425
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	44
SacII	CCGCGG	1 cut(s)	421
SalI	GTCGAC	1 cut(s)	68
SapI	GCTCTTC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	2 cut(s)	287, 371
Sau96I	GGNCC	3 cut(s)	219, 331, 425
SetI	ASST	7 cut(s)	48, 75, 112, 200, 221, 265, 322
Sfr303I	CCGCGG	1 cut(s)	421
SgrBI	CCGCGG	1 cut(s)	421
SinI	GGWCC	2 cut(s)	219, 425
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	15, 349, 366
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	7 cut(s)	51, 149, 170, 334, 395, 418, 420
SspMI	CTAG	1 cut(s)	231
StuI	AGGCCT	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	69, 135
TasI	AATT	3 cut(s)	15, 349, 366
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	1 cut(s)	98
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	219, 425
XapI	RAATTY	2 cut(s)	15, 349
XmiI	GTMKAC	1 cut(s)	69
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.