Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28380 |
| prunus_persica | Prupe.3G260400_v2.0.a1 |
| pyrus_communis | pycom08g18490 pycom08g18550 pycom111g04950 pycom111g05050 pycom111g05090 |
| rosa_chinensis | RchiOBHm_Chr1g0327501 |
| rosa_laevigata | RLG00000029988 |
| rosa_multiflora | Rmu_co8098046.1_g000001 Rmu_sc0024030.1_g000004 Rmu_ssc0000042.1_g000042 |
| rosa_roxburghii | Rroxscaffold_4G00322610 |
| rosa_rugosa | Rorug01G0067500 |
| rosa_samantha | Rh1AG084800 Rh1BG067200 Rh1CG082800 Rh1DG089300 |
| rosa_wichuraiana | Rw0G015980 Rw1G006640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 401 |
| AciI | CCGC | 1 cut(s) | 480 |
| AclWI | GGATC | 1 cut(s) | 154 |
| AcsI | RAATTY | 1 cut(s) | 4 |
| AfaI | GTAC | 1 cut(s) | 484 |
| AgsI | TTSAA | 1 cut(s) | 25 |
| Alw26I | GTCTC | 1 cut(s) | 423 |
| AlwI | GGATC | 1 cut(s) | 154 |
| AoxI | GGCC | 1 cut(s) | 307 |
| ApeKI | GCWGC | 1 cut(s) | 333 |
| ApoI | RAATTY | 1 cut(s) | 4 |
| AsuC2I | CCSGG | 1 cut(s) | 139 |
| BbvI | GCAGC | 1 cut(s) | 320 |
| BccI | CCATC | 2 cut(s) | 115, 378 |
| BceAI | ACGGC | 1 cut(s) | 322 |
| BcnI | CCSGG | 1 cut(s) | 139 |
| BcoDI | GTCTC | 1 cut(s) | 423 |
| BisI | GCNGC | 1 cut(s) | 334 |
| BlsI | GCNGC | 1 cut(s) | 335 |
| Bme1390I | CCNGG | 1 cut(s) | 139 |
| BmrFI | CCNGG | 1 cut(s) | 139 |
| BpuMI | CCSGG | 1 cut(s) | 139 |
| BsaAI | YACGTR | 1 cut(s) | 486 |
| BsaJI | CCNNGG | 1 cut(s) | 310 |
| Bse118I | RCCGGY | 1 cut(s) | 454 |
| Bse1I | ACTGG | 1 cut(s) | 413 |
| Bse3DI | GCAATG | 1 cut(s) | 149 |
| BseDI | CCNNGG | 1 cut(s) | 310 |
| BseMI | GCAATG | 1 cut(s) | 149 |
| BseMII | CTCAG | 2 cut(s) | 116, 266 |
| BseNI | ACTGG | 1 cut(s) | 413 |
| BseXI | GCAGC | 1 cut(s) | 320 |
| BsgI | GTGCAG | 1 cut(s) | 166 |
| BshFI | GGCC | 1 cut(s) | 309 |
| BsiSI | CCGG | 2 cut(s) | 138, 455 |
| BsmAI | GTCTC | 1 cut(s) | 423 |
| BsmI | GAATGC | 1 cut(s) | 433 |
| BsnI | GGCC | 1 cut(s) | 309 |
| Bsp143I | GATC | 2 cut(s) | 34, 146 |
| BspACI | CCGC | 1 cut(s) | 480 |
| BspANI | GGCC | 1 cut(s) | 309 |
| BspCNI | CTCAG | 2 cut(s) | 115, 267 |
| BspHI | TCATGA | 1 cut(s) | 120 |
| BspPI | GGATC | 1 cut(s) | 154 |
| BsrDI | GCAATG | 1 cut(s) | 149 |
| BsrFI | RCCGGY | 1 cut(s) | 454 |
| BsrI | ACTGG | 1 cut(s) | 413 |
| BssAI | RCCGGY | 1 cut(s) | 454 |
| BssECI | CCNNGG | 1 cut(s) | 310 |
| BssMI | GATC | 2 cut(s) | 34, 146 |
| BstBAI | YACGTR | 1 cut(s) | 486 |
| BstC8I | GCNNGC | 2 cut(s) | 95, 292 |
| BstDEI | CTNAG | 3 cut(s) | 41, 102, 275 |
| BstKTI | GATC | 2 cut(s) | 37, 149 |
| BstMAI | GTCTC | 1 cut(s) | 423 |
| BstMBI | GATC | 2 cut(s) | 34, 146 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 103 |
| BstSCI | CCNGG | 1 cut(s) | 137 |
| BstSNI | TACGTA | 1 cut(s) | 486 |
| BstV1I | GCAGC | 1 cut(s) | 320 |
| BsuRI | GGCC | 1 cut(s) | 309 |
| BtgZI | GCGATG | 1 cut(s) | 93 |
| BtsIMutI | CAGTG | 1 cut(s) | 272 |
| Cac8I | GCNNGC | 2 cut(s) | 95, 292 |
| CciI | TCATGA | 1 cut(s) | 120 |
| Cfr10I | RCCGGY | 1 cut(s) | 454 |
| CseI | GACGC | 1 cut(s) | 272 |
| Csp6I | GTAC | 1 cut(s) | 483 |
| CviAII | CATG | 1 cut(s) | 121 |
| CviJI | RGCY | 4 cut(s) | 106, 309, 333, 454 |
| CviKI_1 | RGCY | 4 cut(s) | 106, 309, 333, 454 |
| CviQI | GTAC | 1 cut(s) | 483 |
| DdeI | CTNAG | 3 cut(s) | 41, 102, 275 |
| DpnI | GATC | 2 cut(s) | 36, 148 |
| DpnII | GATC | 2 cut(s) | 34, 146 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 401 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 401 |
| Eco105I | TACGTA | 1 cut(s) | 486 |
| EcoRI | GAATTC | 1 cut(s) | 4 |
| FaeI | CATG | 1 cut(s) | 124 |
| FaiI | YATR | 2 cut(s) | 122, 323 |
| FatI | CATG | 1 cut(s) | 120 |
| Fnu4HI | GCNGC | 1 cut(s) | 334 |
| Fsp4HI | GCNGC | 1 cut(s) | 334 |
| GluI | GCNGC | 1 cut(s) | 334 |
| HaeIII | GGCC | 1 cut(s) | 309 |
| HapII | CCGG | 2 cut(s) | 138, 455 |
| HgaI | GACGC | 1 cut(s) | 272 |
| Hin1II | CATG | 1 cut(s) | 124 |
| HincII | GTYRAC | 1 cut(s) | 406 |
| HindII | GTYRAC | 1 cut(s) | 406 |
| HinfI | GANTC | 4 cut(s) | 124, 377, 399, 412 |
| HpaII | CCGG | 2 cut(s) | 138, 455 |
| Hpy166II | GTNNAC | 1 cut(s) | 406 |
| Hpy188I | TCNGA | 6 cut(s) | 146, 229, 262, 314, 376, 451 |
| Hpy188III | TCNNGA | 5 cut(s) | 121, 194, 343, 381, 424 |
| Hpy8I | GTNNAC | 1 cut(s) | 406 |
| Hpy99I | CGWCG | 2 cut(s) | 200, 469 |
| HpyCH4IV | ACGT | 1 cut(s) | 485 |
| HpyCH4V | TGCA | 3 cut(s) | 183, 336, 431 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 103 |
| HpyF3I | CTNAG | 3 cut(s) | 41, 102, 275 |
| HpySE526I | ACGT | 1 cut(s) | 485 |
| Hsp92II | CATG | 1 cut(s) | 124 |
| Kzo9I | GATC | 2 cut(s) | 34, 146 |
| LpnPI | CCDG | 7 cut(s) | 151, 179, 356, 394, 394, 409, 468 |
| Lsp1109I | GCAGC | 1 cut(s) | 320 |
| MaeII | ACGT | 1 cut(s) | 485 |
| MalI | GATC | 2 cut(s) | 36, 148 |
| MboI | GATC | 2 cut(s) | 34, 146 |
| MfeI | CAATTG | 1 cut(s) | 253 |
| MluCI | AATT | 5 cut(s) | 4, 189, 253, 346, 460 |
| MnlI | CCTC | 5 cut(s) | 73, 166, 219, 245, 320 |
| MseI | TTAA | 2 cut(s) | 17, 132 |
| MspI | CCGG | 2 cut(s) | 138, 455 |
| MspR9I | CCNGG | 1 cut(s) | 139 |
| MunI | CAATTG | 1 cut(s) | 253 |
| Mva1269I | GAATGC | 1 cut(s) | 433 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 103 |
| NciI | CCSGG | 1 cut(s) | 139 |
| NdeII | GATC | 2 cut(s) | 34, 146 |
| NlaIII | CATG | 1 cut(s) | 124 |
| NmeAIII | GCCGAG | 1 cut(s) | 309 |
| PagI | TCATGA | 1 cut(s) | 120 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 360, 399 |
| PctI | GAATGC | 1 cut(s) | 433 |
| PfeI | GAWTC | 4 cut(s) | 124, 377, 399, 412 |
| PkrI | GCNGC | 1 cut(s) | 335 |
| Ppu21I | YACGTR | 1 cut(s) | 486 |
| RsaI | GTAC | 1 cut(s) | 484 |
| RsaNI | GTAC | 1 cut(s) | 483 |
| SaqAI | TTAA | 2 cut(s) | 17, 132 |
| SatI | GCNGC | 1 cut(s) | 334 |
| Sau3AI | GATC | 2 cut(s) | 34, 146 |
| ScrFI | CCNGG | 1 cut(s) | 139 |
| SetI | ASST | 4 cut(s) | 84, 237, 369, 488 |
| SnaBI | TACGTA | 1 cut(s) | 486 |
| Sse9I | AATT | 5 cut(s) | 4, 189, 253, 346, 460 |
| SsiI | CCGC | 1 cut(s) | 480 |
| StyD4I | CCNGG | 1 cut(s) | 137 |
| TaiI | ACGT | 1 cut(s) | 488 |
| TaqI | TCGA | 4 cut(s) | 195, 363, 393, 464 |
| TasI | AATT | 5 cut(s) | 4, 189, 253, 346, 460 |
| TfiI | GAWTC | 4 cut(s) | 124, 377, 399, 412 |
| Tru1I | TTAA | 2 cut(s) | 17, 132 |
| Tru9I | TTAA | 2 cut(s) | 17, 132 |
| TscAI | CASTG | 1 cut(s) | 279 |
| TseI | GCWGC | 1 cut(s) | 333 |
| TspDTI | ATGAA | 3 cut(s) | 17, 109, 137 |
| TspRI | CASTG | 1 cut(s) | 279 |
| XapI | RAATTY | 1 cut(s) | 4 |