Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0011545

Physical Location & Seq

Genomic Coordinates Forward (+)

3236623 .. 3238109

Gene Structure 1487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTATTCGACCAACCTCGCTTCTTTCTTGGACAATTGTTCAGACGCTCTCTCACTGAGAAAACTCCACGCTCGCATTTTCGCTCACGGCCTCGGAAACAATATATTTCTCGGCTGCAAGCTCCTGAATTGCTACGCAAAGTTCGACCTTTTATCAGATTCCGGATGGGTTTTCGACAGAATCGTCAACGGGAATCTGTCTCTCTGGAGTGCAATTCTTGTTGGGTATTTCAGAGCCGGTCAATTCGACGAAGTTCTTCGGCGGTACGTAGATTTGAGGCGGTGGAATATCGGGTTGGATAGCGGCGCCATTACGTTTGGTTTGAAAAGTTGTATCGAGTTGGGGGGTTTGGGATTTGGACGAGGGATTCATGGGGATGCTTTGAAGTCTGGGTTTAGTTCAAATGGATTTGTGGGTTCGTCGCTTATCGGGTTGAACTCTAGATTTAGGTTTGTTGAAGATGCAGCTGAAGTGTTCGATGAAATTACTGGGAGAGATATTGTTGCTCAGAGTGGCGACCAACGTGCTTGTGAGGCTTTTGGGTTTGCTCGCCGTATGCAGAGGCAAGGATTGCATCCAAATCGGGTCACTCTTGTTAGCTTACTTCAGGCAGCAGTGATGGGAGAAAATTTTGTCCCGGATTTGATAACTTTGTCCAATGGGCTTCTGTCTTGTGCTTGCTTGAATTATTTGCGTCCTGGAAAGAGTATCCATGGTTATATTATTCGAGCTGGTGTTCAAATTGATCTATTGGCAGCAACCGCTCTGGTCGATCTATACTCCATATCAAACAAGTTGATCCAGTCCAGGGAACTATTTGATAGAATGGAGAAAAAGGATGCTATATCTTATGATGTGATGATGACGGGCTATGTTTACCGTGGCCATGCCGATGAAATCGTAACATTGTTTCGATCGATGCAAATGGAGCAAGCACAGCATGATTTAGCTACTCTGATGACTTTGCTTCATGCAATTTGTGAGCTTGGAAGTCTGAATTTTGCAAAGGAAGTCCACTGTAACTTATATCGAGCTGATATGAACAACGATACATCTCTCACCAATTCTTTGGTCACGACTTATTCCGAGTGTGGGAAATTAAATACGGCATCTAGTCTATTTGAGCATGCAGTTGAACGGTGTCTGACATCATGGAACACGATGATGCTTGCATATGGGATGCACGGCAGACCCTTTAACCTTTTCGTTGTCATCGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

408

Amino Acids

45.18

Weight (kDa)

6.59

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28380
prunus_persica	Prupe.3G260400_v2.0.a1
pyrus_communis	pycom08g18490 pycom08g18550 pycom111g04950 pycom111g05050 pycom111g05090
rosa_chinensis	RchiOBHm_Chr1g0327501
rosa_laevigata	RLG00000029988
rosa_multiflora	Rmu_co8098046.1_g000001 Rmu_sc0024030.1_g000004 Rmu_ssc0000042.1_g000042
rosa_roxburghii	Rroxscaffold_4G00322610
rosa_rugosa	Rorug01G0067500
rosa_samantha	Rh1AG084800 Rh1BG067200 Rh1CG082800 Rh1DG089300
rosa_wichuraiana	Rw0G015980 Rw1G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	764
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	4 cut(s)	262, 280, 303, 762
AclWI	GGATC	1 cut(s)	793
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	2 cut(s)	628, 997
AcuI	CTGAAG	2 cut(s)	489, 590
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	808, 1092
AgsI	TTSAA	8 cut(s)	325, 385, 402, 436, 458, 685, 740, 1136
AjnI	CCWGG	2 cut(s)	697, 806
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	7 cut(s)	121, 467, 600, 731, 950, 985, 1034
AluI	AGCT	7 cut(s)	121, 467, 600, 731, 950, 985, 1034
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	1 cut(s)	793
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	2 cut(s)	88, 883
ApeKI	GCWGC	4 cut(s)	114, 464, 611, 755
ApoI	RAATTY	2 cut(s)	628, 997
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	638
AsuHPI	GGTGA	1 cut(s)	1051
BalI	TGGCCA	1 cut(s)	885
BanI	GGYRCC	1 cut(s)	305
BbvI	GCAGC	4 cut(s)	101, 476, 623, 767
BccI	CCATC	2 cut(s)	159, 613
BceAI	ACGGC	4 cut(s)	103, 537, 1122, 1201
BcgI	CGANNNNNNTGC	4 cut(s)	506, 540, 563, 597
BciT130I	CCWGG	2 cut(s)	699, 808
BciVI	GTATCC	1 cut(s)	719
BcnI	CCSGG	1 cut(s)	638
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	2 cut(s)	441, 1113
BfoI	RGCGCY	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	719
BisI	GCNGC	5 cut(s)	115, 304, 465, 612, 756
BlsI	GCNGC	5 cut(s)	116, 305, 466, 613, 757
Bme1390I	CCNGG	3 cut(s)	638, 699, 808
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	3 cut(s)	638, 699, 808
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	8 cut(s)	367, 451, 583, 829, 909, 1118, 1155, 1170
BmuI	ACTGGG	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	638
Bsa29I	ATCGAT	1 cut(s)	917
BsaAI	YACGTR	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	4 cut(s)	91, 712, 807, 880
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	2 cut(s)	808, 1092
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	2 cut(s)	493, 802
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	699, 808
BseCI	ATCGAT	1 cut(s)	917
BseDI	CCNNGG	4 cut(s)	91, 712, 807, 880
BseGI	GGATG	5 cut(s)	170, 382, 574, 844, 1185
BseLI	CCNNNNNNNGG	2 cut(s)	808, 1092
BseMII	CTCAG	2 cut(s)	47, 521
BseNI	ACTGG	2 cut(s)	493, 802
BseXI	GCAGC	4 cut(s)	101, 476, 623, 767
Bsh1285I	CGRYCG	1 cut(s)	917
BshFI	GGCC	2 cut(s)	90, 885
BshNI	GGYRCC	1 cut(s)	305
BshVI	ATCGAT	1 cut(s)	917
BsiEI	CGRYCG	1 cut(s)	917
BsiSI	CCGG	3 cut(s)	162, 237, 638
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	2 cut(s)	808, 1092
BsmAI	GTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	2 cut(s)	90, 885
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	745, 772, 798, 914
Bsp19I	CCATGG	1 cut(s)	712
BspACI	CCGC	4 cut(s)	262, 280, 303, 762
BspANI	GGCC	2 cut(s)	90, 885
BspCNI	CTCAG	2 cut(s)	48, 520
BspDI	ATCGAT	1 cut(s)	917
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	1 cut(s)	307
BspPI	GGATC	1 cut(s)	793
BspT107I	GGYRCC	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	764
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	493, 802
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	4 cut(s)	91, 712, 807, 880
BssMI	GATC	4 cut(s)	745, 772, 798, 914
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	712
Bst2UI	CCWGG	2 cut(s)	699, 808
Bst4CI	ACNGT	3 cut(s)	881, 1019, 1140
BstACI	GRCGYC	1 cut(s)	306
BstAPI	GCANNNNNTGC	1 cut(s)	571
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	7 cut(s)	73, 119, 550, 679, 933, 1128, 1170
BstDEI	CTNAG	2 cut(s)	56, 507
BstDSI	CCRYGG	2 cut(s)	712, 880
BstF5I	GGATG	5 cut(s)	170, 382, 574, 844, 1185
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	4 cut(s)	748, 775, 801, 917
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	4 cut(s)	745, 772, 798, 914
BstMCI	CGRYCG	1 cut(s)	917
BstMWI	GCNNNNNNNGC	5 cut(s)	533, 571, 761, 928, 937
BstNI	CCWGG	2 cut(s)	699, 808
BstNSI	RCATGY	1 cut(s)	1130
BstSCI	CCNGG	3 cut(s)	636, 697, 806
BstSNI	TACGTA	1 cut(s)	268
BstV1I	GCAGC	4 cut(s)	101, 476, 623, 767
BstXI	CCANNNNNNTGG	1 cut(s)	1069
Bsu15I	ATCGAT	1 cut(s)	917
BsuI	GTATCC	1 cut(s)	719
BsuRI	GGCC	2 cut(s)	90, 885
BsuTUI	ATCGAT	1 cut(s)	917
BtgI	CCRYGG	2 cut(s)	712, 880
BtsCI	GGATG	5 cut(s)	170, 382, 574, 844, 1185
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	3 cut(s)	53, 621, 1015
Cac8I	GCNNGC	7 cut(s)	73, 119, 550, 679, 933, 1128, 1170
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	917
CseI	GACGC	2 cut(s)	53, 683
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	7 cut(s)	371, 713, 887, 941, 971, 1127, 1152
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	56, 507
DinI	GGCGCC	1 cut(s)	307
DpnI	GATC	4 cut(s)	747, 774, 800, 916
DpnII	GATC	4 cut(s)	745, 772, 798, 914
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	883
Eco105I	TACGTA	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	712
Eco57I	CTGAAG	2 cut(s)	489, 590
EcoRII	CCWGG	2 cut(s)	697, 806
EcoT14I	CCWWGG	1 cut(s)	712
EgeI	GGCGCC	1 cut(s)	307
EheI	GGCGCC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	712
FaeI	CATG	7 cut(s)	374, 716, 890, 944, 974, 1130, 1155
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	7 cut(s)	370, 712, 886, 940, 970, 1126, 1151
FauNDI	CATATG	1 cut(s)	1174
Fnu4HI	GCNGC	5 cut(s)	115, 304, 465, 612, 756
FokI	GGATG	5 cut(s)	177, 389, 561, 851, 1192
Fsp4HI	GCNGC	5 cut(s)	115, 304, 465, 612, 756
FspBI	CTAG	2 cut(s)	441, 1113
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	5 cut(s)	115, 304, 465, 612, 756
GsuI	CTGGAG	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	90, 885
HapII	CCGG	3 cut(s)	162, 237, 638
HgaI	GACGC	2 cut(s)	53, 683
HhaI	GCGC	1 cut(s)	308
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	7 cut(s)	374, 716, 890, 944, 974, 1130, 1155
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HincII	GTYRAC	2 cut(s)	187, 1219
HindII	GTYRAC	2 cut(s)	187, 1219
HinfI	GANTC	4 cut(s)	158, 180, 193, 367
HpaII	CCGG	3 cut(s)	162, 237, 638
HphI	GGTGA	1 cut(s)	1051
Hpy166II	GTNNAC	4 cut(s)	187, 877, 1015, 1219
Hpy188I	TCNGA	9 cut(s)	43, 95, 157, 233, 510, 957, 996, 1087, 1146
Hpy188III	TCNNGA	5 cut(s)	124, 162, 205, 441, 1075
Hpy8I	GTNNAC	4 cut(s)	187, 877, 1015, 1219
Hpy99I	CGWCG	2 cut(s)	251, 424
HpyCH4III	ACNGT	3 cut(s)	881, 1019, 1140
HpyCH4IV	ACGT	3 cut(s)	267, 314, 523
HpyF10VI	GCNNNNNNNGC	5 cut(s)	533, 571, 761, 928, 937
HpyF3I	CTNAG	2 cut(s)	56, 507
HpySE526I	ACGT	3 cut(s)	267, 314, 523
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	7 cut(s)	374, 716, 890, 944, 974, 1130, 1155
HspAI	GCGC	1 cut(s)	306
KasI	GGCGCC	1 cut(s)	305
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	745, 772, 798, 914
LmnI	GCTCC	2 cut(s)	126, 928
Lsp1109I	GCAGC	4 cut(s)	101, 476, 623, 767
LweI	GCATC	8 cut(s)	367, 451, 583, 829, 909, 1118, 1155, 1170
MaeI	CTAG	2 cut(s)	441, 1113
MaeII	ACGT	3 cut(s)	267, 314, 523
MaeIII	GTNAC	4 cut(s)	586, 901, 1019, 1072
MalI	GATC	4 cut(s)	747, 774, 800, 916
MbiI	CCGCTC	1 cut(s)	764
MboI	GATC	4 cut(s)	745, 772, 798, 914
MboII	GAAGA	2 cut(s)	248, 470
MfeI	CAATTG	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	885
MluNI	TGGCCA	1 cut(s)	885
Mly113I	GGCGCC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	6 cut(s)	26, 101, 270, 356, 526, 555
Mox20I	TGGCCA	1 cut(s)	885
MroI	TCCGGA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	885
MseI	TTAA	2 cut(s)	1100, 1197
MslI	CAYNNNNRTG	3 cut(s)	375, 891, 1163
Msp20I	TGGCCA	1 cut(s)	885
MspA1I	CMGCKG	1 cut(s)	467
MspI	CCGG	3 cut(s)	162, 237, 638
MspR9I	CCNGG	3 cut(s)	638, 699, 808
MunI	CAATTG	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	699, 808
MwoI	GCNNNNNNNGC	5 cut(s)	533, 571, 761, 928, 937
NarI	GGCGCC	1 cut(s)	306
NciI	CCSGG	1 cut(s)	638
NcoI	CCATGG	1 cut(s)	712
NdeI	CATATG	1 cut(s)	1174
NdeII	GATC	4 cut(s)	745, 772, 798, 914
NlaIII	CATG	7 cut(s)	374, 716, 890, 944, 974, 1130, 1155
NlaIV	GGNNCC	1 cut(s)	307
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	2 cut(s)	586, 1072
NspI	RCATGY	1 cut(s)	1130
PaeI	GCATGC	1 cut(s)	1130
PcsI	WCGNNNNNNNCGW	3 cut(s)	141, 180, 1212
PdmI	GAANNNNTTC	1 cut(s)	255
PfeI	GAWTC	4 cut(s)	158, 180, 193, 367
PfoI	TCCNGGA	2 cut(s)	636, 697
PkrI	GCNGC	5 cut(s)	116, 305, 466, 613, 757
Ple19I	CGATCG	1 cut(s)	917
PluTI	GGCGCC	1 cut(s)	309
Ppu21I	YACGTR	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	697, 806
PspGI	CCWGG	2 cut(s)	697, 806
PspN4I	GGNNCC	1 cut(s)	307
PvuI	CGATCG	1 cut(s)	917
PvuII	CAGCTG	1 cut(s)	467
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	3 cut(s)	375, 891, 1163
SaqAI	TTAA	2 cut(s)	1100, 1197
SatI	GCNGC	5 cut(s)	115, 304, 465, 612, 756
Sau3AI	GATC	4 cut(s)	745, 772, 798, 914
ScrFI	CCNGG	3 cut(s)	638, 699, 808
SfaNI	GCATC	8 cut(s)	367, 451, 583, 829, 909, 1118, 1155, 1170
SfoI	GGCGCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	3 cut(s)	375, 891, 1163
SnaBI	TACGTA	1 cut(s)	268
SphI	GCATGC	1 cut(s)	1130
SsiI	CCGC	4 cut(s)	262, 280, 303, 762
SspDI	GGCGCC	1 cut(s)	305
SspMI	CTAG	2 cut(s)	441, 1113
StyD4I	CCNGG	3 cut(s)	636, 697, 806
StyI	CCWWGG	1 cut(s)	712
TaaI	ACNGT	3 cut(s)	881, 1019, 1140
TaiI	ACGT	3 cut(s)	270, 317, 526
TauI	GCSGC	1 cut(s)	306
TfiI	GAWTC	4 cut(s)	158, 180, 193, 367
Tru1I	TTAA	2 cut(s)	1100, 1197
Tru9I	TTAA	2 cut(s)	1100, 1197
TscAI	CASTG	3 cut(s)	60, 621, 1022
TseFI	GTSAC	2 cut(s)	586, 1072
TseI	GCWGC	4 cut(s)	114, 464, 611, 755
Tsp45I	GTSAC	2 cut(s)	586, 1072
TspDTI	ATGAA	5 cut(s)	359, 495, 909, 959, 1055
TspRI	CASTG	3 cut(s)	60, 621, 1022
XapI	RAATTY	2 cut(s)	628, 997
XbaI	TCTAGA	1 cut(s)	440
XceI	RCATGY	1 cut(s)	1130
XmnI	GAANNNNTTC	1 cut(s)	255
XspI	CTAG	2 cut(s)	441, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.