Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8098046.1

Orthogroup ID

OG0011545

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 599

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8098046.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 599 bp

attcttgctctgggcctcggcaaccatatgttcctgggctctaaacttctgaactgctatgcaaagttggaacttgtgtcagaatctagatgggttttcgatgcaattgtcaatggaagtctctctctttggaactcaatccttgttgggtattacagaactggtcacttccgtgaagttgtgaggcggtacattcatttgaggcagtggaacattgggttggacagtgcagccattacgtttggttgtaagagctgtattgagttgagtaatttggaattgggtagaggaatccatgcagatgcattcaagtttgggttgaatgcaagtgggtttgtgggttcgtcgcttattgggttgtactgtgagtgtgggaatattggggatgcgtataaggtgtttgatgaaattactgacccagatgttgttgtgtatacttcgattattacagggtatgctcacattggcgattttcgggcttatgaggcttttgagattactggccgaatgcaaaggcaaggtttgcatcctaatagggtcaccctggtgagcttacttcaggcagcctcacagttagacgcactcaaagaaggtcgttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

200

Amino Acids

22.13

Weight (kDa)

6.65

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28380
prunus_persica	Prupe.3G260400_v2.0.a1
pyrus_communis	pycom08g18490 pycom08g18550 pycom111g04950 pycom111g05050 pycom111g05090
rosa_chinensis	RchiOBHm_Chr1g0327501
rosa_laevigata	RLG00000029988
rosa_multiflora	Rmu_co8098046.1_g000001 Rmu_sc0024030.1_g000004 Rmu_ssc0000042.1_g000042
rosa_roxburghii	Rroxscaffold_4G00322610
rosa_rugosa	Rorug01G0067500
rosa_samantha	Rh1AG084800 Rh1BG067200 Rh1CG082800 Rh1DG089300
rosa_wichuraiana	Rw0G015980 Rw1G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	434
AciI	CCGC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	502
AcuI	CTGAAG	1 cut(s)	542
AfaI	GTAC	2 cut(s)	191, 362
AgsI	TTSAA	2 cut(s)	310, 322
AjnI	CCWGG	2 cut(s)	33, 543
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AleI	CACNNNNGTG	2 cut(s)	171, 545
AluBI	AGCT	2 cut(s)	255, 552
AluI	AGCT	2 cut(s)	255, 552
Alw26I	GTCTC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	13, 502
ApeKI	GCWGC	2 cut(s)	230, 563
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	532, 559
BanII	GRGCYC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	242, 575
BccI	CCATC	1 cut(s)	84
BciT130I	CCWGG	2 cut(s)	35, 545
BcoDI	GTCTC	1 cut(s)	125
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	2 cut(s)	231, 564
BlsI	GCNGC	2 cut(s)	232, 565
Bme1390I	CCNGG	2 cut(s)	35, 545
BmgT120I	GGNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	35, 545
BmsI	GCATC	4 cut(s)	91, 292, 376, 535
BsaJI	CCNNGG	3 cut(s)	16, 34, 543
Bse1I	ACTGG	2 cut(s)	166, 505
BseBI	CCWGG	2 cut(s)	35, 545
BseDI	CCNNGG	3 cut(s)	16, 34, 543
BseGI	GGATG	2 cut(s)	391, 526
BseNI	ACTGG	2 cut(s)	166, 505
BseXI	GCAGC	2 cut(s)	242, 575
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	2 cut(s)	15, 504
BsmAI	GTCTC	1 cut(s)	125
BsmI	GAATGC	3 cut(s)	305, 328, 513
BsnI	GGCC	2 cut(s)	15, 504
Bsp1286I	GDGCHC	1 cut(s)	41
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	15, 504
BsrI	ACTGG	2 cut(s)	166, 505
BssECI	CCNNGG	3 cut(s)	16, 34, 543
BssNAI	GTATAC	1 cut(s)	435
Bst1107I	GTATAC	1 cut(s)	435
Bst2UI	CCWGG	2 cut(s)	35, 545
Bst4CI	ACNGT	3 cut(s)	227, 365, 573
BstAPI	GCANNNNNTGC	1 cut(s)	523
BstEII	GGTNACC	1 cut(s)	538
BstF5I	GGATG	2 cut(s)	391, 526
BstMAI	GTCTC	1 cut(s)	125
BstMWI	GCNNNNNNNGC	2 cut(s)	485, 523
BstNI	CCWGG	2 cut(s)	35, 545
BstPI	GGTNACC	1 cut(s)	538
BstSCI	CCNGG	2 cut(s)	33, 543
BstV1I	GCAGC	2 cut(s)	242, 575
BstZ17I	GTATAC	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	15, 504
BtsCI	GGATG	2 cut(s)	391, 526
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 232
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	2 cut(s)	190, 361
CviAII	CATG	1 cut(s)	296
CviJI	RGCY	9 cut(s)	15, 39, 233, 255, 479, 488, 504, 552, 566
CviKI_1	RGCY	9 cut(s)	15, 39, 233, 255, 479, 488, 504, 552, 566
CviQI	GTAC	2 cut(s)	190, 361
EaeI	YGGCCR	1 cut(s)	502
Eco24I	GRGCYC	1 cut(s)	41
Eco57I	CTGAAG	1 cut(s)	542
Eco91I	GGTNACC	1 cut(s)	538
EcoO65I	GGTNACC	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	33, 543
EcoT22I	ATGCAT	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	1 cut(s)	299
FaiI	YATR	8 cut(s)	27, 29, 60, 297, 393, 435, 456, 483
FatI	CATG	1 cut(s)	295
FauNDI	CATATG	1 cut(s)	27
FblI	GTMKAC	1 cut(s)	434
Fnu4HI	GCNGC	2 cut(s)	231, 564
FokI	GGATG	2 cut(s)	398, 513
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	231, 564
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	2 cut(s)	231, 564
HaeIII	GGCC	2 cut(s)	15, 504
HgaI	GACGC	1 cut(s)	587
Hin1II	CATG	1 cut(s)	299
HinfI	GANTC	2 cut(s)	83, 291
HphI	GGTGA	2 cut(s)	532, 559
Hpy166II	GTNNAC	1 cut(s)	435
Hpy188I	TCNGA	2 cut(s)	51, 82
Hpy188III	TCNNGA	1 cut(s)	87
Hpy8I	GTNNAC	1 cut(s)	435
Hpy99I	CGWCG	1 cut(s)	349
HpyAV	CCTTC	1 cut(s)	584
HpyCH4III	ACNGT	3 cut(s)	227, 365, 573
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	8 cut(s)	62, 104, 230, 299, 305, 326, 511, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	485, 523
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	299
LpnPI	CCDG	9 cut(s)	20, 47, 147, 432, 435, 486, 530, 545, 557
Lsp1109I	GCAGC	2 cut(s)	242, 575
LweI	GCATC	4 cut(s)	91, 292, 376, 535
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	164, 538
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	4 cut(s)	105, 271, 278, 408
MmeI	TCCRAC	2 cut(s)	48, 201
MnlI	CCTC	6 cut(s)	26, 177, 195, 281, 478, 577
Mph1103I	ATGCAT	1 cut(s)	307
MslI	CAYNNNNRTG	3 cut(s)	171, 300, 545
MspR9I	CCNGG	2 cut(s)	35, 545
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	3 cut(s)	305, 328, 513
MvaI	CCWGG	2 cut(s)	35, 545
MwoI	GCNNNNNNNGC	2 cut(s)	485, 523
NdeI	CATATG	1 cut(s)	27
NlaIII	CATG	1 cut(s)	299
NmuCI	GTSAC	2 cut(s)	164, 538
NsiI	ATGCAT	1 cut(s)	307
OliI	CACNNNNGTG	2 cut(s)	171, 545
PctI	GAATGC	3 cut(s)	305, 328, 513
PfeI	GAWTC	2 cut(s)	83, 291
PkrI	GCNGC	2 cut(s)	232, 565
Psp6I	CCWGG	2 cut(s)	33, 543
PspEI	GGTNACC	1 cut(s)	538
PspGI	CCWGG	2 cut(s)	33, 543
PspPI	GGNCC	1 cut(s)	13
RsaI	GTAC	2 cut(s)	191, 362
RsaNI	GTAC	2 cut(s)	190, 361
RseI	CAYNNNNRTG	3 cut(s)	171, 300, 545
SatI	GCNGC	2 cut(s)	231, 564
Sau96I	GGNCC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	35, 545
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	242, 257, 399, 523, 554, 595
SfaNI	GCATC	4 cut(s)	91, 292, 376, 535
SmiMI	CAYNNNNRTG	3 cut(s)	171, 300, 545
Sse9I	AATT	4 cut(s)	105, 271, 278, 408
SsiI	CCGC	1 cut(s)	187
SspI	AATATT	1 cut(s)	379
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	33, 543
TaaI	ACNGT	3 cut(s)	227, 365, 573
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	2 cut(s)	99, 440
TasI	AATT	4 cut(s)	105, 271, 278, 408
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	83, 291
TscAI	CASTG	2 cut(s)	212, 232
TseFI	GTSAC	2 cut(s)	164, 538
TseI	GCWGC	2 cut(s)	230, 563
Tsp45I	GTSAC	2 cut(s)	164, 538
TspDTI	ATGAA	2 cut(s)	185, 420
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	2 cut(s)	212, 232
XbaI	TCTAGA	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	434
XspI	CTAG	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.