Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28380 |
| prunus_persica | Prupe.3G260400_v2.0.a1 |
| pyrus_communis | pycom08g18490 pycom08g18550 pycom111g04950 pycom111g05050 pycom111g05090 |
| rosa_chinensis | RchiOBHm_Chr1g0327501 |
| rosa_laevigata | RLG00000029988 |
| rosa_multiflora | Rmu_co8098046.1_g000001 Rmu_sc0024030.1_g000004 Rmu_ssc0000042.1_g000042 |
| rosa_roxburghii | Rroxscaffold_4G00322610 |
| rosa_rugosa | Rorug01G0067500 |
| rosa_samantha | Rh1AG084800 Rh1BG067200 Rh1CG082800 Rh1DG089300 |
| rosa_wichuraiana | Rw0G015980 Rw1G006640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 273 |
| AciI | CCGC | 1 cut(s) | 371 |
| AclWI | GGATC | 1 cut(s) | 34 |
| AfaI | GTAC | 1 cut(s) | 357 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 369 |
| AluBI | AGCT | 1 cut(s) | 212 |
| AluI | AGCT | 1 cut(s) | 212 |
| Alw26I | GTCTC | 1 cut(s) | 295 |
| AlwI | GGATC | 1 cut(s) | 34 |
| AoxI | GGCC | 1 cut(s) | 179 |
| ApeKI | GCWGC | 1 cut(s) | 205 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 346 |
| AsuC2I | CCSGG | 1 cut(s) | 19 |
| BbvI | GCAGC | 1 cut(s) | 192 |
| BccI | CCATC | 2 cut(s) | 43, 250 |
| BceAI | ACGGC | 1 cut(s) | 194 |
| BcnI | CCSGG | 1 cut(s) | 19 |
| BcoDI | GTCTC | 1 cut(s) | 295 |
| BisI | GCNGC | 1 cut(s) | 206 |
| BlsI | GCNGC | 1 cut(s) | 207 |
| Bme1390I | CCNGG | 1 cut(s) | 19 |
| BmrFI | CCNGG | 1 cut(s) | 19 |
| BpuMI | CCSGG | 1 cut(s) | 19 |
| BsaAI | YACGTR | 1 cut(s) | 359 |
| BsaJI | CCNNGG | 1 cut(s) | 182 |
| Bse118I | RCCGGY | 1 cut(s) | 327 |
| Bse3DI | GCAATG | 1 cut(s) | 29 |
| BseDI | CCNNGG | 1 cut(s) | 182 |
| BseGI | GGATG | 1 cut(s) | 35 |
| BseMI | GCAATG | 1 cut(s) | 29 |
| BseMII | CTCAG | 1 cut(s) | 146 |
| BseXI | GCAGC | 1 cut(s) | 192 |
| BsgI | GTGCAG | 1 cut(s) | 46 |
| BshFI | GGCC | 1 cut(s) | 181 |
| BsiSI | CCGG | 2 cut(s) | 18, 328 |
| BsmAI | GTCTC | 1 cut(s) | 295 |
| BsmI | GAATGC | 1 cut(s) | 305 |
| BsnI | GGCC | 1 cut(s) | 181 |
| Bsp143I | GATC | 1 cut(s) | 26 |
| BspACI | CCGC | 1 cut(s) | 371 |
| BspANI | GGCC | 1 cut(s) | 181 |
| BspCNI | CTCAG | 1 cut(s) | 147 |
| BspPI | GGATC | 1 cut(s) | 34 |
| BsrDI | GCAATG | 1 cut(s) | 29 |
| BsrFI | RCCGGY | 1 cut(s) | 327 |
| BssAI | RCCGGY | 1 cut(s) | 327 |
| BssECI | CCNNGG | 1 cut(s) | 182 |
| BssMI | GATC | 1 cut(s) | 26 |
| BstBAI | YACGTR | 1 cut(s) | 359 |
| BstC8I | GCNNGC | 2 cut(s) | 172, 210 |
| BstDEI | CTNAG | 1 cut(s) | 155 |
| BstF5I | GGATG | 1 cut(s) | 35 |
| BstKTI | GATC | 1 cut(s) | 29 |
| BstMAI | GTCTC | 1 cut(s) | 295 |
| BstMBI | GATC | 1 cut(s) | 26 |
| BstSCI | CCNGG | 1 cut(s) | 17 |
| BstSNI | TACGTA | 1 cut(s) | 359 |
| BstV1I | GCAGC | 1 cut(s) | 192 |
| BsuRI | GGCC | 1 cut(s) | 181 |
| BtsCI | GGATG | 1 cut(s) | 35 |
| BtsIMutI | CAGTG | 1 cut(s) | 152 |
| Cac8I | GCNNGC | 2 cut(s) | 172, 210 |
| Cfr10I | RCCGGY | 1 cut(s) | 327 |
| CseI | GACGC | 1 cut(s) | 152 |
| Csp6I | GTAC | 1 cut(s) | 356 |
| CviJI | RGCY | 5 cut(s) | 181, 205, 212, 327, 353 |
| CviKI_1 | RGCY | 5 cut(s) | 181, 205, 212, 327, 353 |
| CviQI | GTAC | 1 cut(s) | 356 |
| DdeI | CTNAG | 1 cut(s) | 155 |
| DpnI | GATC | 1 cut(s) | 28 |
| DpnII | GATC | 1 cut(s) | 26 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 273 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 273 |
| Eco105I | TACGTA | 1 cut(s) | 359 |
| FaiI | YATR | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 206 |
| FokI | GGATG | 1 cut(s) | 22 |
| Fsp4HI | GCNGC | 1 cut(s) | 206 |
| GluI | GCNGC | 1 cut(s) | 206 |
| HaeIII | GGCC | 1 cut(s) | 181 |
| HapII | CCGG | 2 cut(s) | 18, 328 |
| HgaI | GACGC | 1 cut(s) | 152 |
| HincII | GTYRAC | 1 cut(s) | 278 |
| HindII | GTYRAC | 1 cut(s) | 278 |
| HindIII | AAGCTT | 1 cut(s) | 210 |
| HinfI | GANTC | 4 cut(s) | 4, 249, 271, 284 |
| HpaII | CCGG | 2 cut(s) | 18, 328 |
| Hpy166II | GTNNAC | 1 cut(s) | 278 |
| Hpy188I | TCNGA | 6 cut(s) | 109, 142, 186, 217, 248, 324 |
| Hpy188III | TCNNGA | 3 cut(s) | 74, 253, 296 |
| Hpy8I | GTNNAC | 1 cut(s) | 278 |
| Hpy99I | CGWCG | 1 cut(s) | 342 |
| HpyCH4IV | ACGT | 1 cut(s) | 358 |
| HpyCH4V | TGCA | 3 cut(s) | 63, 208, 303 |
| HpyF3I | CTNAG | 1 cut(s) | 155 |
| HpySE526I | ACGT | 1 cut(s) | 358 |
| Kzo9I | GATC | 1 cut(s) | 26 |
| LpnPI | CCDG | 5 cut(s) | 31, 59, 266, 281, 341 |
| Lsp1109I | GCAGC | 1 cut(s) | 192 |
| MaeII | ACGT | 1 cut(s) | 358 |
| MalI | GATC | 1 cut(s) | 28 |
| MboI | GATC | 1 cut(s) | 26 |
| MboII | GAAGA | 1 cut(s) | 339 |
| MluCI | AATT | 4 cut(s) | 69, 133, 218, 333 |
| MmeI | TCCRAC | 1 cut(s) | 367 |
| MnlI | CCTC | 4 cut(s) | 99, 125, 192, 361 |
| MroXI | GAANNNNTTC | 1 cut(s) | 346 |
| MseI | TTAA | 1 cut(s) | 12 |
| MspI | CCGG | 2 cut(s) | 18, 328 |
| MspR9I | CCNGG | 1 cut(s) | 19 |
| Mva1269I | GAATGC | 1 cut(s) | 305 |
| NciI | CCSGG | 1 cut(s) | 19 |
| NdeII | GATC | 1 cut(s) | 26 |
| NmeAIII | GCCGAG | 1 cut(s) | 181 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 232, 271 |
| PctI | GAATGC | 1 cut(s) | 305 |
| PdmI | GAANNNNTTC | 1 cut(s) | 346 |
| PfeI | GAWTC | 4 cut(s) | 4, 249, 271, 284 |
| PkrI | GCNGC | 1 cut(s) | 207 |
| Ppu21I | YACGTR | 1 cut(s) | 359 |
| RsaI | GTAC | 1 cut(s) | 357 |
| RsaNI | GTAC | 1 cut(s) | 356 |
| SaqAI | TTAA | 1 cut(s) | 12 |
| SatI | GCNGC | 1 cut(s) | 206 |
| Sau3AI | GATC | 1 cut(s) | 26 |
| ScrFI | CCNGG | 1 cut(s) | 19 |
| SetI | ASST | 5 cut(s) | 117, 214, 234, 241, 361 |
| SnaBI | TACGTA | 1 cut(s) | 359 |
| Sse9I | AATT | 4 cut(s) | 69, 133, 218, 333 |
| SsiI | CCGC | 1 cut(s) | 371 |
| StyD4I | CCNGG | 1 cut(s) | 17 |
| TaiI | ACGT | 1 cut(s) | 361 |
| TaqI | TCGA | 4 cut(s) | 75, 235, 265, 337 |
| TasI | AATT | 4 cut(s) | 69, 133, 218, 333 |
| TfiI | GAWTC | 4 cut(s) | 4, 249, 271, 284 |
| Tru1I | TTAA | 1 cut(s) | 12 |
| Tru9I | TTAA | 1 cut(s) | 12 |
| TscAI | CASTG | 1 cut(s) | 159 |
| TseI | GCWGC | 1 cut(s) | 205 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspRI | CASTG | 1 cut(s) | 159 |
| XmnI | GAANNNNTTC | 1 cut(s) | 346 |