Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011545

Physical Location & Seq

Genomic Coordinates Reverse (-)

53037559 .. 53039919

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2361 bp

ATGTCTCGGTTTGGATCAGTAGCTAACAGAGTCCATATTAGATCTTTCTCTAAATCACTTACAAAACACCCACTAGTTCCTCCATCTTCATCTTCAATTCCTTCGGACAAGTTCGCTTTTTTCTTGGACAATTGCTCAGACGCTTTCTCACTTAGAAAACTCCATGCTCGTATTCTTGCTCTGGGCCTCGGTAACCATATGTTCCTGGGCTCTAAACTTCTGAATTGCTATGCAAAGTTGGACCTTGTGTCAGAATCTAGATGGGTTTTCGATGCAATTGTCAATGGAAGTCTCTCTCTTTGGAACTCAATCCTTGTTGGGTATTACAGAACTGGTCACTTCCGTGAAGTTTGGAGGCGGTACATTCATTTGAGGCAATGCAACATTGGGTTGGATAGTGCAGCCATTACGTTTGGTTGTAAGAGCTGTATTGAGTTGAGTAATTTGGAATTGGGTAGAGGAATTCATGCAGATGCATTCAAGTTTGGGTTGAATGCAAATGGGTTTGTGGGTTCGTCGCTTATTGGGTTGTACTCTGGATGTGGAGATATTGGGGATGCGTATAAGGTGTTTGATGAAATTACTGACCCAGATGTTGTTGTGTATACTTCGATTATTACAGGGTATGCTCACATTGGGGATTTTCGGGCTTATGAGGCTTTCGAGATTGCCGGCCGAATGCAAGGGCAAGGTTTGCATCCTAATAGGGTCACCCTGGTGAGCTTACTTCAGGCAGCCTCACAGTTAGACACACCCAAAGAAGGTCGTTCGGTCCATGGCTATGCTATTAGAAGAGGAATTGGTGGTTTTGATGAAGTGTTTGAAACAAGTCTCATGGACATGTATAACAAGTGTGGGGCACCTAAAATGGCAGCCTGCATTTTTGGAAAGATGAAGAAAAAGACAATTGGTTTGTGGAATGTGATGATTGCAGGTTATCTGAAATCCGAGCAGCCGTTGGAAGCTTTCTGCCTTTTCTGTCAAGTGATGCAAGAAAAATATGTTCCGGATTTGATAACTTTCTCCAATGGGATTTTGTCTTGTGCTCACTTGTGTTATTTGCGTCAGGGAAAGAGTATCCATGGTCACCTAATTCGAGTTGGTGTTGAACTTGATCTAGTAGCAACCACTTCTCTGGTTGATTTGTACTCCAAATGCCACAAGTTGATCCAAGCCAGGGCATTATTTGATAGAATGGAGAAAAAGGATGCTATCTTTTACGATGTGATGATGGCTGGTTATCTGCACAATTATTTTGCTAGTGAAGCTATGGATATCTTTCTGGAAATGGTTGGAGGGGGAGTTAAACCAAACCTAGGTTCCATTTTGAGTGTACTTTCTGCAACTTCGGAACTGAAAGACATAAGAAAAGGCAAGTGCATTCATGGGTATGTAATAAGACATGGATTTGACTTGAATATTGAAATTGCCAATCAGACCATCTACATGTACTCAAAATGTGGTTATATAGTCTGTGCGAGGCAATTCTTCAACAAGATAAGATATAGAGACTTGGTCTCATGGACTTCAATGATGATGGGTTATGTTCATCATGGGCATGCTGATGAAGCTATATTCTTGTTCCGATTAATGCAAAGGAAGCAGGTGGAAGATGATACAGTCACGATGTTAACCTTGCTTCAGGCACTTTGTCAGCTTGGGTGTCTGAATCTAGTGAAGGAAGTCCACTGTCACTTGTATAGAGTTAATATAGACAATGAGATATCTCTCACCAATTCTTTGATTACTGCTTATTCTAAGTGTGGAAAGTTAAACATGTCTGCAAATCTTTTTGATCATGCAGTTAAACGGTGTCCTACTTCATGGAATGCAATGATACTTGCATATGGGATGCATGGAAAATGTATCGAGGCCCTCATGGTATTTGAACAGATGAAAAGTGAGAAAGTTGAGCCTGATGAGGTTACCTTTACATCAATTCTTACTGCTTGTAGCCATTCTGGCATGGTAAATGAGGGGCTGCGAGTCTTCAAGTCAATGGTTGAGGATTTCTCTATAATCCCATGTGAAGAGCATTATGGTTGCATGGTAGATTTATTAAGCCGAGCAGGACTACTTGAAGAAGCATATAAACTGGTTAAATCCCTACCATCAAGGCTTCGTGGTTCTACACTAGGCACCTTGCTTGCAGCTTGTAAGTTACATGGAAATACAGAGATGGGGGAGGATTTAGGAAGGCGTCTCTTGGATTTAGAGCCCAAGAATTCTAGTGCTTTTGCCATGGTTTCAAGTTTATATGCAGAAGGTGGAAAGTGGGGTGAAGTAGTCACAATAAGAGCCACAGAAAAAGGGAGAGGTTTAAAAAGAACTCCAGGGTATAGTCTGATACAGGTAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

786

Amino Acids

87.65

Weight (kDa)

8.4

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	504 - 552	2.9e-09	PPR repeat family
PPR	PF01535	506 - 535	6.2e-07	PPR repeat
PPR_2	PF13041	608 - 652	2.6e-11	PPR repeat family
PPR	PF01535	608 - 636	6e-07	PPR repeat
E_motif	PF20431	722 - 784	9e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011545)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28380
prunus_persica	Prupe.3G260400_v2.0.a1
pyrus_communis	pycom08g18490 pycom08g18550 pycom111g04950 pycom111g05050 pycom111g05090
rosa_chinensis	RchiOBHm_Chr1g0327501
rosa_laevigata	RLG00000029988
rosa_multiflora	Rmu_co8098046.1_g000001 Rmu_sc0024030.1_g000004 Rmu_ssc0000042.1_g000042
rosa_roxburghii	Rroxscaffold_4G00322610
rosa_rugosa	Rorug01G0067500
rosa_samantha	Rh1AG084800 Rh1BG067200 Rh1CG082800 Rh1DG089300
rosa_wichuraiana	Rw0G015980 Rw1G006640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1594
Acc36I	ACCTGC	2 cut(s)	923, 1594
AccB1I	GGYRCC	2 cut(s)	859, 2138
AccI	GTMKAC	1 cut(s)	605
AccIII	TCCGGA	1 cut(s)	1006
AciI	CCGC	1 cut(s)	358
AclWI	GGATC	2 cut(s)	22, 1162
AcoI	YGGCCR	1 cut(s)	673
AcsI	RAATTY	2 cut(s)	462, 2224
AcuI	CTGAAG	2 cut(s)	713, 1625
AcyI	GRCGYC	1 cut(s)	2200
AfaI	GTAC	5 cut(s)	362, 533, 1148, 1335, 1451
AfiI	CCNNNNNNNGG	3 cut(s)	761, 1177, 1316
AflIII	ACRYGT	3 cut(s)	840, 1446, 1776
AhdI	GACNNNNNGTC	1 cut(s)	247
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	4 cut(s)	204, 714, 1175, 2332
AjuI	GAANNNNNNNTTGG	2 cut(s)	1303, 1335
AleI	CACNNNNGTG	2 cut(s)	342, 716
AluBI	AGCT	8 cut(s)	23, 426, 723, 965, 1268, 1571, 1657, 2153
AluI	AGCT	8 cut(s)	23, 426, 723, 965, 1268, 1571, 1657, 2153
Alw21I	GWGCWC	1 cut(s)	1048
Alw26I	GTCTC	6 cut(s)	9, 296, 836, 1503, 1522, 2207
AlwI	GGATC	2 cut(s)	22, 1162
Aor13HI	TCCGGA	1 cut(s)	1006
AoxI	GGCC	3 cut(s)	184, 673, 1872
ApeKI	GCWGC	6 cut(s)	401, 734, 872, 952, 1981, 2150
ApoI	RAATTY	2 cut(s)	462, 2224
ArsI	GACNNNNNNTTYG	2 cut(s)	895, 927
AseI	ATTAAT	1 cut(s)	1589
AspA2I	CCTAGG	1 cut(s)	1315
AspS9I	GGNCC	4 cut(s)	184, 241, 772, 1873
AsuHPI	GGTGA	5 cut(s)	703, 730, 1079, 1723, 2291
AvaII	GGWCC	2 cut(s)	241, 772
AvrII	CCTAGG	1 cut(s)	1315
BaeGI	GKGCMC	1 cut(s)	862
BanI	GGYRCC	2 cut(s)	859, 2138
BanII	GRGCYC	2 cut(s)	212, 2220
BbsI	GAAGAC	1 cut(s)	1981
Bbv12I	GWGCWC	1 cut(s)	1048
BbvI	GCAGC	6 cut(s)	413, 746, 884, 964, 1968, 2162
BccI	CCATC	7 cut(s)	91, 255, 1225, 1448, 1531, 2119, 2173
BceAI	ACGGC	1 cut(s)	940
BciT130I	CCWGG	4 cut(s)	206, 716, 1177, 2334
BciVI	GTATCC	1 cut(s)	1088
BclI	TGATCA	1 cut(s)	1795
BcoDI	GTCTC	6 cut(s)	9, 296, 836, 1503, 1522, 2207
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	8 cut(s)	74, 258, 1118, 1260, 1316, 1673, 2135, 2229
BfuAI	ACCTGC	2 cut(s)	923, 1594
BfuI	GTATCC	1 cut(s)	1088
BglI	GCCNNNNNGGC	1 cut(s)	1962
BglII	AGATCT	1 cut(s)	41
BisI	GCNGC	6 cut(s)	402, 735, 873, 953, 1982, 2151
BlnI	CCTAGG	1 cut(s)	1315
BlsI	GCNGC	6 cut(s)	403, 736, 874, 954, 1983, 2152
Bme1390I	CCNGG	4 cut(s)	206, 716, 1177, 2334
Bme18I	GGWCC	2 cut(s)	241, 772
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmgT120I	GGNCC	4 cut(s)	184, 241, 772, 1873
BmiI	GGNNCC	3 cut(s)	861, 1321, 2140
BmrFI	CCNGG	4 cut(s)	206, 716, 1177, 2334
BmsI	GCATC	7 cut(s)	262, 463, 547, 706, 978, 1198, 1842
BpiI	GAAGAC	1 cut(s)	1981
BplI	GAGNNNNNCTC	2 cut(s)	1997, 2029
BpmI	CTGGAG	1 cut(s)	2316
BsaHI	GRCGYC	1 cut(s)	2200
BsaI	GGTCTC	1 cut(s)	1522
BsaJI	CCNNGG	9 cut(s)	187, 205, 714, 775, 1081, 1176, 1315, 2241, 2333
BsaWI	WCCGGW	1 cut(s)	1006
BsaXI	ACNNNNNCTCC	2 cut(s)	1287, 1317
Bsc4I	CCNNNNNNNGG	3 cut(s)	761, 1177, 1316
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	2 cut(s)	337, 2100
Bse3DI	GCAATG	2 cut(s)	383, 1839
BseAI	TCCGGA	1 cut(s)	1006
BseBI	CCWGG	4 cut(s)	206, 716, 1177, 2334
BseDI	CCNNGG	9 cut(s)	187, 205, 714, 775, 1081, 1176, 1315, 2241, 2333
BseGI	GGATG	5 cut(s)	545, 562, 697, 1213, 1857
BseLI	CCNNNNNNNGG	3 cut(s)	761, 1177, 1316
BseMI	GCAATG	2 cut(s)	383, 1839
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	337, 2100
BseSI	GKGCMC	1 cut(s)	862
BseX3I	CGGCCG	1 cut(s)	673
BseXI	GCAGC	6 cut(s)	413, 746, 884, 964, 1968, 2162
BsgI	GTGCAG	2 cut(s)	420, 1229
Bsh1285I	CGRYCG	1 cut(s)	676
BshFI	GGCC	3 cut(s)	186, 675, 1874
BshNI	GGYRCC	2 cut(s)	859, 2138
BsiEI	CGRYCG	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	1048
BsiSI	CCGG	2 cut(s)	672, 1007
BslI	CCNNNNNNNGG	3 cut(s)	761, 1177, 1316
BsmAI	GTCTC	6 cut(s)	9, 296, 836, 1503, 1522, 2207
BsmBI	CGTCTC	1 cut(s)	2207
BsmI	GAATGC	5 cut(s)	476, 499, 684, 1380, 1834
BsnI	GGCC	3 cut(s)	186, 675, 1874
Bso31I	GGTCTC	1 cut(s)	1522
Bsp1286I	GDGCHC	4 cut(s)	212, 862, 1048, 2220
Bsp13I	TCCGGA	1 cut(s)	1006
Bsp143I	GATC	5 cut(s)	14, 41, 1114, 1167, 1795
Bsp19I	CCATGG	3 cut(s)	775, 1081, 2241
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	3 cut(s)	186, 675, 1874
BspCNI	CTCAG	1 cut(s)	149
BspEI	TCCGGA	1 cut(s)	1006
BspLI	GGNNCC	3 cut(s)	861, 1321, 2140
BspMI	ACCTGC	2 cut(s)	923, 1594
BspPI	GGATC	2 cut(s)	22, 1162
BspQI	GCTCTTC	1 cut(s)	2025
BspT107I	GGYRCC	2 cut(s)	859, 2138
BspTNI	GGTCTC	1 cut(s)	1522
BsrDI	GCAATG	2 cut(s)	383, 1839
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	2 cut(s)	337, 2100
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	9 cut(s)	187, 205, 714, 775, 1081, 1176, 1315, 2241, 2333
BssMI	GATC	5 cut(s)	14, 41, 1114, 1167, 1795
BssNAI	GTATAC	1 cut(s)	606
BssNI	GRCGYC	1 cut(s)	2200
BssT1I	CCWWGG	4 cut(s)	775, 1081, 1315, 2241
Bst1107I	GTATAC	1 cut(s)	606
Bst2UI	CCWGG	4 cut(s)	206, 716, 1177, 2334
Bst4CI	ACNGT	4 cut(s)	744, 1621, 1691, 1812
Bst6I	CTCTTC	2 cut(s)	787, 2025
BstACI	GRCGYC	1 cut(s)	2200
BstAPI	GCANNNNNTGC	1 cut(s)	694
BstC8I	GCNNGC	4 cut(s)	673, 877, 1560, 2148
BstDEI	CTNAG	3 cut(s)	136, 152, 1758
BstDSI	CCRYGG	3 cut(s)	775, 1081, 2241
BstEII	GGTNACC	4 cut(s)	191, 709, 1085, 1924
BstF5I	GGATG	5 cut(s)	545, 562, 697, 1213, 1857
BstKTI	GATC	5 cut(s)	17, 44, 1117, 1170, 1798
BstMAI	GTCTC	6 cut(s)	9, 296, 836, 1503, 1522, 2207
BstMBI	GATC	5 cut(s)	14, 41, 1114, 1167, 1795
BstMCI	CGRYCG	1 cut(s)	676
BstMWI	GCNNNNNNNGC	6 cut(s)	656, 694, 1265, 1568, 1600, 1962
BstNI	CCWGG	4 cut(s)	206, 716, 1177, 2334
BstNSI	RCATGY	4 cut(s)	844, 1450, 1562, 1780
BstPI	GGTNACC	4 cut(s)	191, 709, 1085, 1924
BstSCI	CCNGG	4 cut(s)	204, 714, 1175, 2332
BstSLI	GKGCMC	1 cut(s)	862
BstV1I	GCAGC	6 cut(s)	413, 746, 884, 964, 1968, 2162
BstV2I	GAAGAC	1 cut(s)	1981
BstX2I	RGATCY	1 cut(s)	41
BstXI	CCANNNNNNTGG	1 cut(s)	1135
BstYI	RGATCY	1 cut(s)	41
BstZ17I	GTATAC	1 cut(s)	606
BstZI	CGGCCG	1 cut(s)	673
BsuI	GTATCC	1 cut(s)	1088
BsuRI	GGCC	3 cut(s)	186, 675, 1874
BtgI	CCRYGG	3 cut(s)	775, 1081, 2241
BtsCI	GGATG	5 cut(s)	545, 562, 697, 1213, 1857
BtsIMutI	CAGTG	1 cut(s)	1687
BveI	ACCTGC	2 cut(s)	923, 1594
Cac8I	GCNNGC	4 cut(s)	673, 877, 1560, 2148
Cfr10I	RCCGGY	1 cut(s)	671
Cfr13I	GGNCC	4 cut(s)	184, 241, 772, 1873
CseI	GACGC	3 cut(s)	149, 1052, 2189
Csp6I	GTAC	5 cut(s)	361, 532, 1147, 1334, 1450
CviQI	GTAC	5 cut(s)	361, 532, 1147, 1334, 1450
DdeI	CTNAG	3 cut(s)	136, 152, 1758
DpnI	GATC	5 cut(s)	16, 43, 1116, 1169, 1797
DpnII	GATC	5 cut(s)	14, 41, 1114, 1167, 1795
DraI	TTTAAA	1 cut(s)	2322
DriI	GACNNNNNGTC	1 cut(s)	247
EaeI	YGGCCR	1 cut(s)	673
EagI	CGGCCG	1 cut(s)	673
Eam1104I	CTCTTC	2 cut(s)	787, 2025
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	2 cut(s)	787, 2025
EclXI	CGGCCG	1 cut(s)	673
Eco130I	CCWWGG	4 cut(s)	775, 1081, 1315, 2241
Eco24I	GRGCYC	2 cut(s)	212, 2220
Eco31I	GGTCTC	1 cut(s)	1522
Eco32I	GATATC	2 cut(s)	1276, 1725
Eco47I	GGWCC	2 cut(s)	241, 772
Eco52I	CGGCCG	1 cut(s)	673
Eco57I	CTGAAG	2 cut(s)	713, 1625
Eco91I	GGTNACC	4 cut(s)	191, 709, 1085, 1924
EcoO109I	RGGNCCY	1 cut(s)	1873
EcoO65I	GGTNACC	4 cut(s)	191, 709, 1085, 1924
EcoRI	GAATTC	2 cut(s)	462, 2224
EcoRII	CCWGG	4 cut(s)	204, 714, 1175, 2332
EcoRV	GATATC	2 cut(s)	1276, 1725
EcoT14I	CCWWGG	4 cut(s)	775, 1081, 1315, 2241
EcoT22I	ATGCAT	2 cut(s)	478, 1857
EcoT38I	GRGCYC	2 cut(s)	212, 2220
ErhI	CCWWGG	4 cut(s)	775, 1081, 1315, 2241
Esp3I	CGTCTC	1 cut(s)	2207
FauNDI	CATATG	2 cut(s)	198, 1846
FbaI	TGATCA	1 cut(s)	1795
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	6 cut(s)	402, 735, 873, 953, 1982, 2151
FokI	GGATG	5 cut(s)	552, 569, 684, 1220, 1864
FriOI	GRGCYC	2 cut(s)	212, 2220
Fsp4HI	GCNGC	6 cut(s)	402, 735, 873, 953, 1982, 2151
FspBI	CTAG	8 cut(s)	74, 258, 1118, 1260, 1316, 1673, 2135, 2229
GluI	GCNGC	6 cut(s)	402, 735, 873, 953, 1982, 2151
GsuI	CTGGAG	1 cut(s)	2316
HaeIII	GGCC	3 cut(s)	186, 675, 1874
HapII	CCGG	2 cut(s)	672, 1007
HgaI	GACGC	3 cut(s)	149, 1052, 2189
Hin1I	GRCGYC	1 cut(s)	2200
HincII	GTYRAC	1 cut(s)	1632
HindII	GTYRAC	1 cut(s)	1632
HindIII	AAGCTT	1 cut(s)	963
HinfI	GANTC	4 cut(s)	30, 254, 1669, 1986
HpaI	GTTAAC	1 cut(s)	1632
HpaII	CCGG	2 cut(s)	672, 1007
HphI	GGTGA	5 cut(s)	703, 730, 1079, 1723, 2291
Hpy166II	GTNNAC	4 cut(s)	606, 1334, 1632, 1687
Hpy188III	TCNNGA	6 cut(s)	258, 537, 664, 1007, 1283, 1624
Hpy8I	GTNNAC	4 cut(s)	606, 1334, 1632, 1687
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	5 cut(s)	111, 755, 1672, 2190, 2258
HpyCH4III	ACNGT	4 cut(s)	744, 1621, 1691, 1812
HpyCH4IV	ACGT	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	6 cut(s)	656, 694, 1265, 1568, 1600, 1962
HpyF3I	CTNAG	3 cut(s)	136, 152, 1758
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	2200
Kpn2I	TCCGGA	1 cut(s)	1006
KroI	GCCGGC	1 cut(s)	671
KroNI	GCCGGC	1 cut(s)	673
Ksp22I	TGATCA	1 cut(s)	1795
KspAI	GTTAAC	1 cut(s)	1632
Kzo9I	GATC	5 cut(s)	14, 41, 1114, 1167, 1795
LguI	GCTCTTC	1 cut(s)	2025
Lsp1109I	GCAGC	6 cut(s)	413, 746, 884, 964, 1968, 2162
LweI	GCATC	7 cut(s)	262, 463, 547, 706, 978, 1198, 1842
MaeI	CTAG	8 cut(s)	74, 258, 1118, 1260, 1316, 1673, 2135, 2229
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	9 cut(s)	191, 335, 709, 1085, 1621, 1691, 1924, 2160, 2287
MalI	GATC	5 cut(s)	16, 43, 1116, 1169, 1797
MboI	GATC	5 cut(s)	14, 41, 1114, 1167, 1795
MboII	GAAGA	9 cut(s)	78, 84, 804, 907, 1480, 1622, 1981, 2042, 2093
MfeI	CAATTG	3 cut(s)	130, 276, 906
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	4 cut(s)	212, 862, 1048, 2220
MlyI	GAGTC	2 cut(s)	39, 1995
MmeI	TCCRAC	4 cut(s)	219, 372, 939, 1273
Mph1103I	ATGCAT	2 cut(s)	478, 1857
MroI	TCCGGA	1 cut(s)	1006
MroNI	GCCGGC	1 cut(s)	671
MslI	CAYNNNNRTG	9 cut(s)	342, 471, 716, 780, 839, 1389, 1445, 1557, 1563
MspI	CCGG	2 cut(s)	672, 1007
MspR9I	CCNGG	4 cut(s)	206, 716, 1177, 2334
MunI	CAATTG	3 cut(s)	130, 276, 906
Mva1269I	GAATGC	5 cut(s)	476, 499, 684, 1380, 1834
MvaI	CCWGG	4 cut(s)	206, 716, 1177, 2334
MwoI	GCNNNNNNNGC	6 cut(s)	656, 694, 1265, 1568, 1600, 1962
NaeI	GCCGGC	1 cut(s)	673
NcoI	CCATGG	3 cut(s)	775, 1081, 2241
NdeI	CATATG	2 cut(s)	198, 1846
NdeII	GATC	5 cut(s)	14, 41, 1114, 1167, 1795
NgoMIV	GCCGGC	1 cut(s)	671
NlaIV	GGNNCC	3 cut(s)	861, 1321, 2140
NmeAIII	GCCGAG	1 cut(s)	2090
NmuCI	GTSAC	6 cut(s)	335, 709, 1085, 1621, 1691, 2287
NsiI	ATGCAT	2 cut(s)	478, 1857
NspI	RCATGY	4 cut(s)	844, 1450, 1562, 1780
OliI	CACNNNNGTG	2 cut(s)	342, 716
PaeI	GCATGC	1 cut(s)	1562
PaqCI	CACCTGC	1 cut(s)	1594
PciI	ACATGT	3 cut(s)	840, 1446, 1776
PciSI	GCTCTTC	1 cut(s)	2025
PctI	GAATGC	5 cut(s)	476, 499, 684, 1380, 1834
PdiI	GCCGGC	1 cut(s)	673
PfeI	GAWTC	2 cut(s)	254, 1669
PflFI	GACNNNGTC	1 cut(s)	1514
PkrI	GCNGC	6 cut(s)	403, 736, 874, 954, 1983, 2152
PleI	GAGTC	2 cut(s)	38, 1994
PpsI	GAGTC	2 cut(s)	38, 1994
PscI	ACATGT	3 cut(s)	840, 1446, 1776
PshBI	ATTAAT	1 cut(s)	1589
Psp6I	CCWGG	4 cut(s)	204, 714, 1175, 2332
PspEI	GGTNACC	4 cut(s)	191, 709, 1085, 1924
PspGI	CCWGG	4 cut(s)	204, 714, 1175, 2332
PspN4I	GGNNCC	3 cut(s)	861, 1321, 2140
PspPI	GGNCC	4 cut(s)	184, 241, 772, 1873
PsuI	RGATCY	1 cut(s)	41
PsyI	GACNNNGTC	1 cut(s)	1514
RsaI	GTAC	5 cut(s)	362, 533, 1148, 1335, 1451
RsaNI	GTAC	5 cut(s)	361, 532, 1147, 1334, 1450
RseI	CAYNNNNRTG	9 cut(s)	342, 471, 716, 780, 839, 1389, 1445, 1557, 1563
SapI	GCTCTTC	1 cut(s)	2025
SatI	GCNGC	6 cut(s)	402, 735, 873, 953, 1982, 2151
Sau3AI	GATC	5 cut(s)	14, 41, 1114, 1167, 1795
Sau96I	GGNCC	4 cut(s)	184, 241, 772, 1873
SchI	GAGTC	2 cut(s)	39, 1995
ScrFI	CCNGG	4 cut(s)	206, 716, 1177, 2334
SduI	GDGCHC	4 cut(s)	212, 862, 1048, 2220
SfaNI	GCATC	7 cut(s)	262, 463, 547, 706, 978, 1198, 1842
SinI	GGWCC	2 cut(s)	241, 772
SmiMI	CAYNNNNRTG	9 cut(s)	342, 471, 716, 780, 839, 1389, 1445, 1557, 1563
SpeI	ACTAGT	1 cut(s)	73
SphI	GCATGC	1 cut(s)	1562
SsiI	CCGC	1 cut(s)	358
SspI	AATATT	1 cut(s)	1420
SspMI	CTAG	8 cut(s)	74, 258, 1118, 1260, 1316, 1673, 2135, 2229
StyD4I	CCNGG	4 cut(s)	204, 714, 1175, 2332
StyI	CCWWGG	4 cut(s)	775, 1081, 1315, 2241
TaaI	ACNGT	4 cut(s)	744, 1621, 1691, 1812
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	5 cut(s)	270, 611, 663, 1096, 1869
TaqII	GACCGA	1 cut(s)	760
TatI	WGTACW	4 cut(s)	531, 1146, 1333, 1449
TfiI	GAWTC	2 cut(s)	254, 1669
TscAI	CASTG	1 cut(s)	1694
TseFI	GTSAC	6 cut(s)	335, 709, 1085, 1621, 1691, 2287
TseI	GCWGC	6 cut(s)	401, 734, 872, 952, 1981, 2150
Tsp45I	GTSAC	6 cut(s)	335, 709, 1085, 1621, 1691, 2287
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	1694
Tth111I	GACNNNGTC	1 cut(s)	1514
VpaK11BI	GGWCC	2 cut(s)	241, 772
VspI	ATTAAT	1 cut(s)	1589
XapI	RAATTY	2 cut(s)	462, 2224
XbaI	TCTAGA	1 cut(s)	257
XceI	RCATGY	4 cut(s)	844, 1450, 1562, 1780
XmaJI	CCTAGG	1 cut(s)	1315
XmiI	GTMKAC	1 cut(s)	605
XspI	CTAG	8 cut(s)	74, 258, 1118, 1260, 1316, 1673, 2135, 2229
Zsp2I	ATGCAT	2 cut(s)	478, 1857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.