Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g28380 |
| prunus_persica | Prupe.3G260400_v2.0.a1 |
| pyrus_communis | pycom08g18490 pycom08g18550 pycom111g04950 pycom111g05050 pycom111g05090 |
| rosa_chinensis | RchiOBHm_Chr1g0327501 |
| rosa_laevigata | RLG00000029988 |
| rosa_multiflora | Rmu_co8098046.1_g000001 Rmu_sc0024030.1_g000004 Rmu_ssc0000042.1_g000042 |
| rosa_roxburghii | Rroxscaffold_4G00322610 |
| rosa_rugosa | Rorug01G0067500 |
| rosa_samantha | Rh1AG084800 Rh1BG067200 Rh1CG082800 Rh1DG089300 |
| rosa_wichuraiana | Rw0G015980 Rw1G006640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 320 |
| AciI | CCGC | 3 cut(s) | 277, 295, 318 |
| AcyI | GRCGYC | 1 cut(s) | 321 |
| AfaI | GTAC | 2 cut(s) | 281, 571 |
| AgsI | TTSAA | 4 cut(s) | 340, 400, 417, 590 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 293, 325 |
| AluBI | AGCT | 2 cut(s) | 136, 593 |
| AluI | AGCT | 2 cut(s) | 136, 593 |
| Alw26I | GTCTC | 2 cut(s) | 219, 528 |
| AoxI | GGCC | 1 cut(s) | 103 |
| ApeKI | GCWGC | 1 cut(s) | 129 |
| AspLEI | GCGC | 1 cut(s) | 323 |
| BanI | GGYRCC | 1 cut(s) | 320 |
| BbvI | GCAGC | 1 cut(s) | 116 |
| BccI | CCATC | 1 cut(s) | 174 |
| BceAI | ACGGC | 1 cut(s) | 118 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 179, 213 |
| BcoDI | GTCTC | 2 cut(s) | 219, 528 |
| BfaI | CTAG | 1 cut(s) | 456 |
| BfoI | RGCGCY | 1 cut(s) | 324 |
| BisI | GCNGC | 2 cut(s) | 130, 319 |
| BlpI | GCTNAGC | 1 cut(s) | 594 |
| BlsI | GCNGC | 2 cut(s) | 131, 320 |
| BmiI | GGNNCC | 1 cut(s) | 322 |
| BmsI | GCATC | 2 cut(s) | 466, 488 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 27 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 594 |
| BsaAI | YACGTR | 1 cut(s) | 283 |
| BsaHI | GRCGYC | 1 cut(s) | 321 |
| BsaI | GGTCTC | 1 cut(s) | 528 |
| BsaJI | CCNNGG | 1 cut(s) | 106 |
| Bse118I | RCCGGY | 1 cut(s) | 251 |
| BseDI | CCNNGG | 1 cut(s) | 106 |
| BseGI | GGATG | 1 cut(s) | 579 |
| BseMII | CTCAG | 2 cut(s) | 62, 518 |
| BseXI | GCAGC | 1 cut(s) | 116 |
| BshFI | GGCC | 1 cut(s) | 105 |
| BshNI | GGYRCC | 1 cut(s) | 320 |
| BsiSI | CCGG | 1 cut(s) | 252 |
| BsmAI | GTCTC | 2 cut(s) | 219, 528 |
| BsmI | GAATGC | 1 cut(s) | 229 |
| BsnI | GGCC | 1 cut(s) | 105 |
| Bso31I | GGTCTC | 1 cut(s) | 528 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 594 |
| BspACI | CCGC | 3 cut(s) | 277, 295, 318 |
| BspANI | GGCC | 1 cut(s) | 105 |
| BspCNI | CTCAG | 2 cut(s) | 63, 519 |
| BspLI | GGNNCC | 1 cut(s) | 322 |
| BspT107I | GGYRCC | 1 cut(s) | 320 |
| BspTNI | GGTCTC | 1 cut(s) | 528 |
| BsrFI | RCCGGY | 1 cut(s) | 251 |
| BssAI | RCCGGY | 1 cut(s) | 251 |
| BssECI | CCNNGG | 1 cut(s) | 106 |
| BssNI | GRCGYC | 1 cut(s) | 321 |
| BstACI | GRCGYC | 1 cut(s) | 321 |
| BstBAI | YACGTR | 1 cut(s) | 283 |
| BstC8I | GCNNGC | 2 cut(s) | 88, 134 |
| BstDEI | CTNAG | 3 cut(s) | 71, 527, 594 |
| BstF5I | GGATG | 1 cut(s) | 579 |
| BstH2I | RGCGCY | 1 cut(s) | 324 |
| BstHHI | GCGC | 1 cut(s) | 323 |
| BstMAI | GTCTC | 2 cut(s) | 219, 528 |
| BstSNI | TACGTA | 1 cut(s) | 283 |
| BstV1I | GCAGC | 1 cut(s) | 116 |
| BsuRI | GGCC | 1 cut(s) | 105 |
| BtsCI | GGATG | 1 cut(s) | 579 |
| BtsIMutI | CAGTG | 1 cut(s) | 68 |
| Cac8I | GCNNGC | 2 cut(s) | 88, 134 |
| CfoI | GCGC | 1 cut(s) | 323 |
| Cfr10I | RCCGGY | 1 cut(s) | 251 |
| CseI | GACGC | 1 cut(s) | 68 |
| Csp6I | GTAC | 2 cut(s) | 280, 570 |
| CviJI | RGCY | 6 cut(s) | 105, 129, 136, 184, 251, 593 |
| CviKI_1 | RGCY | 6 cut(s) | 105, 129, 136, 184, 251, 593 |
| CviQI | GTAC | 2 cut(s) | 280, 570 |
| DdeI | CTNAG | 3 cut(s) | 71, 527, 594 |
| DinI | GGCGCC | 1 cut(s) | 322 |
| Eco105I | TACGTA | 1 cut(s) | 283 |
| Eco31I | GGTCTC | 1 cut(s) | 528 |
| EcoT22I | ATGCAT | 1 cut(s) | 481 |
| EgeI | GGCGCC | 1 cut(s) | 322 |
| EheI | GGCGCC | 1 cut(s) | 322 |
| FaiI | YATR | 3 cut(s) | 119, 453, 533 |
| Fnu4HI | GCNGC | 2 cut(s) | 130, 319 |
| FokI | GGATG | 1 cut(s) | 566 |
| Fsp4HI | GCNGC | 2 cut(s) | 130, 319 |
| FspBI | CTAG | 1 cut(s) | 456 |
| GlaI | GCGC | 1 cut(s) | 322 |
| GluI | GCNGC | 2 cut(s) | 130, 319 |
| HaeII | RGCGCY | 1 cut(s) | 324 |
| HaeIII | GGCC | 1 cut(s) | 105 |
| HapII | CCGG | 1 cut(s) | 252 |
| HgaI | GACGC | 1 cut(s) | 68 |
| HhaI | GCGC | 1 cut(s) | 323 |
| Hin1I | GRCGYC | 1 cut(s) | 321 |
| Hin6I | GCGC | 1 cut(s) | 321 |
| HinP1I | GCGC | 1 cut(s) | 321 |
| HinfI | GANTC | 5 cut(s) | 4, 173, 208, 382, 501 |
| HpaII | CCGG | 1 cut(s) | 252 |
| Hpy166II | GTNNAC | 1 cut(s) | 572 |
| Hpy188I | TCNGA | 6 cut(s) | 25, 58, 110, 172, 248, 528 |
| Hpy188III | TCNNGA | 3 cut(s) | 139, 177, 220 |
| Hpy8I | GTNNAC | 1 cut(s) | 572 |
| Hpy99I | CGWCG | 1 cut(s) | 439 |
| HpyCH4IV | ACGT | 2 cut(s) | 282, 329 |
| HpyCH4V | TGCA | 5 cut(s) | 132, 147, 227, 451, 479 |
| HpyF3I | CTNAG | 3 cut(s) | 71, 527, 594 |
| HpySE526I | ACGT | 2 cut(s) | 282, 329 |
| Hsp92I | GRCGYC | 1 cut(s) | 321 |
| HspAI | GCGC | 1 cut(s) | 321 |
| KasI | GGCGCC | 1 cut(s) | 320 |
| LmnI | GCTCC | 1 cut(s) | 141 |
| LpnPI | CCDG | 5 cut(s) | 152, 190, 205, 265, 390 |
| Lsp1109I | GCAGC | 1 cut(s) | 116 |
| LweI | GCATC | 2 cut(s) | 466, 488 |
| MaeI | CTAG | 1 cut(s) | 456 |
| MaeII | ACGT | 2 cut(s) | 282, 329 |
| MfeI | CAATTG | 1 cut(s) | 49 |
| MluCI | AATT | 6 cut(s) | 49, 142, 195, 257, 539, 631 |
| Mly113I | GGCGCC | 1 cut(s) | 321 |
| MlyI | GAGTC | 2 cut(s) | 13, 510 |
| MmeI | TCCRAC | 1 cut(s) | 291 |
| MnlI | CCTC | 6 cut(s) | 41, 108, 116, 285, 371, 513 |
| Mph1103I | ATGCAT | 1 cut(s) | 481 |
| MseI | TTAA | 1 cut(s) | 542 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| MspI | CCGG | 1 cut(s) | 252 |
| MunI | CAATTG | 1 cut(s) | 49 |
| Mva1269I | GAATGC | 1 cut(s) | 229 |
| NarI | GGCGCC | 1 cut(s) | 321 |
| NlaIV | GGNNCC | 1 cut(s) | 322 |
| NmeAIII | GCCGAG | 1 cut(s) | 105 |
| NsiI | ATGCAT | 1 cut(s) | 481 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 156 |
| PctI | GAATGC | 1 cut(s) | 229 |
| PfeI | GAWTC | 3 cut(s) | 173, 208, 382 |
| PkrI | GCNGC | 2 cut(s) | 131, 320 |
| PleI | GAGTC | 2 cut(s) | 12, 509 |
| PluTI | GGCGCC | 1 cut(s) | 324 |
| PpsI | GAGTC | 2 cut(s) | 12, 509 |
| Ppu21I | YACGTR | 1 cut(s) | 283 |
| PspN4I | GGNNCC | 1 cut(s) | 322 |
| RsaI | GTAC | 2 cut(s) | 281, 571 |
| RsaNI | GTAC | 2 cut(s) | 280, 570 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SaqAI | TTAA | 1 cut(s) | 542 |
| SatI | GCNGC | 2 cut(s) | 130, 319 |
| SchI | GAGTC | 2 cut(s) | 13, 510 |
| SetI | ASST | 7 cut(s) | 33, 138, 165, 285, 332, 524, 595 |
| SfaNI | GCATC | 2 cut(s) | 466, 488 |
| SfoI | GGCGCC | 1 cut(s) | 322 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| SnaBI | TACGTA | 1 cut(s) | 283 |
| Sse9I | AATT | 6 cut(s) | 49, 142, 195, 257, 539, 631 |
| SsiI | CCGC | 3 cut(s) | 277, 295, 318 |
| SspDI | GGCGCC | 1 cut(s) | 320 |
| SspMI | CTAG | 1 cut(s) | 456 |
| TaiI | ACGT | 2 cut(s) | 285, 332 |
| TaqI | TCGA | 5 cut(s) | 159, 189, 261, 351, 492 |
| TasI | AATT | 6 cut(s) | 49, 142, 195, 257, 539, 631 |
| TatI | WGTACW | 1 cut(s) | 569 |
| TauI | GCSGC | 1 cut(s) | 321 |
| TfiI | GAWTC | 3 cut(s) | 173, 208, 382 |
| Tru1I | TTAA | 1 cut(s) | 542 |
| Tru9I | TTAA | 1 cut(s) | 542 |
| TscAI | CASTG | 1 cut(s) | 75 |
| TseI | GCWGC | 1 cut(s) | 129 |
| TspDTI | ATGAA | 4 cut(s) | 279, 374, 510, 594 |
| TspRI | CASTG | 1 cut(s) | 75 |
| XspI | CTAG | 1 cut(s) | 456 |
| Zsp2I | ATGCAT | 1 cut(s) | 481 |