Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015638

Physical Location & Seq

Genomic Coordinates Forward (+)

19171595 .. 19172949

Gene Structure 1355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGGGAGAGCACCTTGTTGTGAGAAATCTCACACCAACAAAGGGGCATGGTCGAAAGAGGAGGACCAGCGCCTCATCGACTACATCCGCCAACACGGCGAGGGCTGCTGGCGCTCCCTCCCTAAAGCCGCCGGGTTGCTTAGGTGCGGCAAGAGTTGCAGATTGAGATGGATAAACTACCTCCGCCCCGACCTCAAGCGTGGGAATTTCACACAGGAAGAAGATGAACTCATCATCAAGCTTCATAGCTTGCTGGGAAACAAATGGTCGTTGATTGCGGCGCGATTGCCGGGAAGAACCGATAACGAGATCAAAAACTACTGGAACACTTACGTCAAGCGAAATCTCATCAGTCGCGGCCTCGACCCTCAGACCCACCGCCCGCTTAACCAAGCAACAACCGCCACTTCCACTGCTCCCGCCTCTCGCTTGGACTTGAGAAACCGTCCTCCGCCGTCGTCCGTGGTGTTTGATCATAAACCCATCAACAACCACAGCAAAATTGAATTGTTGAAGCACCCCAAGATGGAGCAGGAGTGCTACAATTACAATATAGAATCGGAGGCCAATTGCTCCACGGCTACCGGCAGCGGCACCACAACCGAAGAAGACCAACAACAACAGCAGCAGAAATACGAGTGTGGTGATCTCAACTTGGATCTTTCAATTGGGTTAGAGCCGTTTCAGTCCAAACCAACTCGGGCGTCGTCTGGGAACTCGGCCGAGTCAAGACTACATCAGATCATAGTTCCTCCCAATAGTAATAATAATCATCAGTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009800 GO:0009803 GO:0009889 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0014070 GO:0016053 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032787 GO:0033993 GO:0042221 GO:0042493 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0044550 GO:0046394 GO:0046677 GO:0048519 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0072330 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

262

Amino Acids

29.72

Weight (kDa)

8.87

Isoelectric Point (pI)

58.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	7.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	3.8e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	5.8e-20	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 115	1.1e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015638)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g32320
malus_domestica	MD08G1220500.v1.1 MD15G1411200.v1.1
prunus_persica	Prupe.1G551400_v2.0.a1 Prupe.1G551400_v2.0.a1
pyrus_communis	pycom08g19130 pycom15g36600
rosa_chinensis	RchiOBHm_Chr7g0228621
rosa_laevigata	RLG00000001551
rosa_roxburghii	Rroxscaffold_3G00231000
rosa_rugosa	Rorug07G0251000.1
rosa_samantha	Rh7AG403100 Rh7BG383900 Rh7CG422400
rosa_wichuraiana	Rw7G033490 Rw7G033520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	593
AccII	CGCG	2 cut(s)	283, 357
AclWI	GGATC	1 cut(s)	666
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	205
AcyI	GRCGYC	1 cut(s)	704
AfiI	CCNNNNNNNGG	2 cut(s)	42, 526
AgsI	TTSAA	3 cut(s)	506, 514, 666
AluBI	AGCT	2 cut(s)	241, 249
AluI	AGCT	2 cut(s)	241, 249
Alw21I	GWGCWC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	666
Ama87I	CYCGRG	1 cut(s)	699
AoxI	GGCC	3 cut(s)	358, 564, 720
ApeKI	GCWGC	3 cut(s)	105, 588, 625
ApoI	RAATTY	1 cut(s)	205
AspLEI	GCGC	3 cut(s)	72, 114, 283
AspS9I	GGNCC	1 cut(s)	64
AsuC2I	CCSGG	2 cut(s)	133, 291
AsuHPI	GGTGA	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	699
AvaII	GGWCC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	13
BbvI	GCAGC	3 cut(s)	92, 600, 637
BccI	CCATC	3 cut(s)	162, 491, 520
BceAI	ACGGC	4 cut(s)	112, 439, 594, 664
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	2 cut(s)	133, 291
BfoI	RGCGCY	2 cut(s)	73, 115
BglI	GCCNNNNNGGC	1 cut(s)	96
BisI	GCNGC	8 cut(s)	106, 129, 148, 279, 358, 589, 592, 626
BlsI	GCNGC	8 cut(s)	107, 130, 149, 280, 359, 590, 593, 627
Bme1390I	CCNGG	2 cut(s)	133, 291
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	699
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	2 cut(s)	133, 291
BpiI	GAAGAC	1 cut(s)	615
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	179, 457
BpuMI	CCSGG	2 cut(s)	133, 291
BsaHI	GRCGYC	1 cut(s)	704
BsaJI	CCNNGG	2 cut(s)	462, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 526
Bse118I	RCCGGY	1 cut(s)	584
Bse1I	ACTGG	1 cut(s)	326
BseDI	CCNNGG	2 cut(s)	462, 576
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	2 cut(s)	42, 526
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	74
BseX3I	CGGCCG	1 cut(s)	720
BseXI	GCAGC	3 cut(s)	92, 600, 637
BseYI	CCCAGC	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	283, 357
Bsh1285I	CGRYCG	1 cut(s)	723
BshFI	GGCC	3 cut(s)	360, 566, 722
BshNI	GGYRCC	1 cut(s)	593
BsiEI	CGRYCG	1 cut(s)	723
BsiHKAI	GWGCWC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	699
BsiSI	CCGG	3 cut(s)	132, 290, 585
BslI	CCNNNNNNNGG	2 cut(s)	42, 526
BsnI	GGCC	3 cut(s)	360, 566, 722
BsoBI	CYCGRG	1 cut(s)	699
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	5 cut(s)	309, 472, 646, 658, 741
BspANI	GGCC	3 cut(s)	360, 566, 722
BspCNI	CTCAG	1 cut(s)	382
BspFNI	CGCG	2 cut(s)	283, 357
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	593
BsrFI	RCCGGY	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	584
BssECI	CCNNGG	2 cut(s)	462, 576
BssMI	GATC	5 cut(s)	309, 472, 646, 658, 741
BssNI	GRCGYC	1 cut(s)	704
Bst4CI	ACNGT	1 cut(s)	446
BstACI	GRCGYC	1 cut(s)	704
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	3 cut(s)	110, 251, 383
BstDEI	CTNAG	2 cut(s)	140, 369
BstDSI	CCRYGG	2 cut(s)	462, 576
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	2 cut(s)	283, 357
BstH2I	RGCGCY	2 cut(s)	73, 115
BstHHI	GCGC	3 cut(s)	72, 114, 283
BstKTI	GATC	5 cut(s)	312, 475, 649, 661, 744
BstMBI	GATC	5 cut(s)	309, 472, 646, 658, 741
BstMCI	CGRYCG	1 cut(s)	723
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 105, 111, 156, 401
BstSCI	CCNGG	2 cut(s)	131, 289
BstUI	CGCG	2 cut(s)	283, 357
BstV1I	GCAGC	3 cut(s)	92, 600, 637
BstV2I	GAAGAC	1 cut(s)	615
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BstZI	CGGCCG	1 cut(s)	720
BsuRI	GGCC	3 cut(s)	360, 566, 722
BtgI	CCRYGG	2 cut(s)	462, 576
BtsCI	GGATG	1 cut(s)	84
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	3 cut(s)	110, 251, 383
CfoI	GCGC	3 cut(s)	72, 114, 283
Cfr10I	RCCGGY	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	693
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	9 cut(s)	105, 128, 241, 249, 360, 566, 581, 679, 722
CviKI_1	RGCY	9 cut(s)	105, 128, 241, 249, 360, 566, 581, 679, 722
DdeI	CTNAG	2 cut(s)	140, 369
DpnI	GATC	5 cut(s)	311, 474, 648, 660, 743
DpnII	GATC	5 cut(s)	309, 472, 646, 658, 741
EaeI	YGGCCR	1 cut(s)	720
EagI	CGGCCG	1 cut(s)	720
EciI	GGCGGA	3 cut(s)	77, 173, 441
EclXI	CGGCCG	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	64
Eco52I	CGGCCG	1 cut(s)	720
Eco88I	CYCGRG	1 cut(s)	699
FaeI	CATG	1 cut(s)	51
FaiI	YATR	5 cut(s)	49, 246, 477, 554, 746
FatI	CATG	1 cut(s)	47
FauI	CCCGC	2 cut(s)	390, 427
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	8 cut(s)	106, 129, 148, 279, 358, 589, 592, 626
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	8 cut(s)	106, 129, 148, 279, 358, 589, 592, 626
GlaI	GCGC	3 cut(s)	71, 113, 282
GluI	GCNGC	8 cut(s)	106, 129, 148, 279, 358, 589, 592, 626
GsaI	CCCAGC	1 cut(s)	257
HaeII	RGCGCY	2 cut(s)	73, 115
HaeIII	GGCC	3 cut(s)	360, 566, 722
HapII	CCGG	3 cut(s)	132, 290, 585
HgaI	GACGC	1 cut(s)	693
HhaI	GCGC	3 cut(s)	72, 114, 283
Hin1I	GRCGYC	1 cut(s)	704
Hin1II	CATG	1 cut(s)	51
Hin6I	GCGC	3 cut(s)	70, 112, 281
HinP1I	GCGC	3 cut(s)	70, 112, 281
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	557, 725
HpaII	CCGG	3 cut(s)	132, 290, 585
HphI	GGTGA	1 cut(s)	656
Hpy188I	TCNGA	3 cut(s)	372, 562, 741
Hpy188III	TCNNGA	1 cut(s)	729
Hpy99I	CGWCG	2 cut(s)	460, 709
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 105, 111, 156, 401
HpyF3I	CTNAG	2 cut(s)	140, 369
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	704
Hsp92II	CATG	1 cut(s)	51
HspAI	GCGC	3 cut(s)	70, 112, 281
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	5 cut(s)	309, 472, 646, 658, 741
LmnI	GCTCC	4 cut(s)	119, 421, 529, 578
Lsp1109I	GCAGC	3 cut(s)	92, 600, 637
MaeII	ACGT	1 cut(s)	333
MalI	GATC	5 cut(s)	311, 474, 648, 660, 743
MboI	GATC	5 cut(s)	309, 472, 646, 658, 741
MboII	GAAGA	5 cut(s)	230, 233, 306, 617, 620
MfeI	CAATTG	2 cut(s)	568, 666
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	6 cut(s)	205, 501, 506, 544, 568, 666
MlyI	GAGTC	1 cut(s)	734
MseI	TTAA	2 cut(s)	387, 784
MspA1I	CMGCKG	1 cut(s)	591
MspI	CCGG	3 cut(s)	132, 290, 585
MspR9I	CCNGG	2 cut(s)	133, 291
MunI	CAATTG	2 cut(s)	568, 666
MvnI	CGCG	2 cut(s)	283, 357
MwoI	GCNNNNNNNGC	5 cut(s)	96, 105, 111, 156, 401
NciI	CCSGG	2 cut(s)	133, 291
NdeII	GATC	5 cut(s)	309, 472, 646, 658, 741
NlaIII	CATG	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	595
NmeAIII	GCCGAG	2 cut(s)	698, 748
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	8 cut(s)	107, 130, 149, 280, 359, 590, 593, 627
PleI	GAGTC	1 cut(s)	733
PpsI	GAGTC	1 cut(s)	733
PspFI	CCCAGC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	658
SaqAI	TTAA	2 cut(s)	387, 784
SatI	GCNGC	8 cut(s)	106, 129, 148, 279, 358, 589, 592, 626
Sau3AI	GATC	5 cut(s)	309, 472, 646, 658, 741
Sau96I	GGNCC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	2 cut(s)	133, 291
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	7 cut(s)	16, 146, 183, 195, 243, 251, 336
SinI	GGWCC	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	194, 436
SmoI	CTYRAG	2 cut(s)	194, 436
Sse9I	AATT	6 cut(s)	205, 501, 506, 544, 568, 666
StyD4I	CCNGG	2 cut(s)	131, 289
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	3 cut(s)	53, 78, 363
TasI	AATT	6 cut(s)	205, 501, 506, 544, 568, 666
TauI	GCSGC	5 cut(s)	131, 150, 281, 360, 594
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	2 cut(s)	387, 784
Tru9I	TTAA	2 cut(s)	387, 784
TscAI	CASTG	1 cut(s)	418
TseI	GCWGC	3 cut(s)	105, 588, 625
TspDTI	ATGAA	2 cut(s)	233, 240
TspGWI	ACGGA	1 cut(s)	451
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	1 cut(s)	64
XapI	RAATTY	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.