pycom09g01560

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010816
Physical Location & Seq
Reverse (-)
1245790 .. 1248401
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
ATGTCTACTCTAAACATAATCGCAGCTCACAACCTCCCTTCACCCTCAACCTCCTCCTTCGTTGCTCAATCTCACAAACCCAACTCGCTTTCACTCTTCTTCTGCAACCAAGCCTCCAGCAAACCCGACCCACCAAGGCTTTCGGGCTTCCCGACCCGGAAAAAACGAAGCTGGATTGTGGGGTCGGTCACTGAGGACAGAGAGGTGGTTCCATTGAAGGAAAAACTTGCAGAGGAGCAAGATAGCAGGTTACTGGTTAATGGGTCGGAAGAGTTTCAGGCTCTTTCGACATCGTCGGAGGAGAAAGGAGAGGGGAATGATTTGGATAAGCTGACGAGCAGAGCAATTAATGCGTTGATTGTTCTGGGATTGGGGACCTTTGCGGTCTCTAAGTTGCTCACAATCGACCACGATTATTGGCATGGATGGACGCTTTATGAGATACTAAGATATGTACCGGAACACAATTGGATTGCATATGAACAAGCTCTCAAAGCAAATCCGGTTTTTGCCAAAATGGTGATAAGTGGTGTTGTCTATACTCTAGGAGATTGGATTGCCCAATGTTTTGAAGGGAAGCCACTTTTGGATTTTGACCGGAAACGCATGTTCAGATCAGGCCTTGTTGGGTTTACTTTCCATGGATCCCTCTCCCATTTTTATTACCAATTTTGTGAGGCTCTTTTTCCTTTGGAGGATTGGTGGGTGGTCCCTGCCAAAATAGCCTTTGATCAAACAGTCTGGTCAGCCATTTGGAACAGCATCTATTTTGTGGTTCTGGGGTTCTTGCGTTTCGAGTCCCCAACCAAGATTTTTGATGAATTGAGGGCTACATTTGGGCCAATGCTGACTGCGGGATGGAAACTTTGGCCATTTGCTCATGTGGTTACATATGGCCTGATCCCTGTTGAACAAAGGCTTCTTTGGGTGGACTGTGTGGAGCTTATTTGGGTTACTATTCTCTCAACTTATTCAAATGAGAATGCAGATTCCAGTTTATCCGAGGCATCTTCTGGTGCAGATTCTGCTTCTTCGTCAAGCAGTTCTTCAAAGGTATGTCACGTTAGCTGTTACTGTAGGGCCTATTTCAGAATCTTAATACATGTTTGGGTCCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

374

Amino Acids

42.15

Weight (kDa)

5.94

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 261 - 322 5.9e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 383, 854
AclWI GGATC 3 cut(s) 639, 652, 895
AcoI YGGCCR 1 cut(s) 869
AfaI GTAC 1 cut(s) 456
AflIII ACRYGT 1 cut(s) 1102
AgsI TTSAA 5 cut(s) 217, 572, 911, 975, 1050
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 6 cut(s) 26, 171, 331, 488, 943, 1068
AluI AGCT 6 cut(s) 26, 171, 331, 488, 943, 1068
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 3 cut(s) 639, 652, 895
AlwNI CAGNNNCTG 1 cut(s) 1025
AoxI GGCC 5 cut(s) 619, 839, 869, 895, 1080
ApeKI GCWGC 1 cut(s) 23
AseI ATTAAT 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 273
AspS9I GGNCC 5 cut(s) 375, 709, 839, 1080, 1111
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 33, 532
AvaII GGWCC 3 cut(s) 375, 709, 1111
BalI TGGCCA 1 cut(s) 871
BamHI GGATCC 1 cut(s) 644
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 420, 852
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 1 cut(s) 545
BfmI CTRYAG 1 cut(s) 1075
BfuAI ACCTGC 1 cut(s) 237
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 3 cut(s) 375, 709, 1111
BmgT120I GGNCC 5 cut(s) 375, 709, 839, 1080, 1111
BmiI GGNNCC 5 cut(s) 210, 376, 646, 711, 1112
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 2 cut(s) 771, 1016
BpmI CTGGAG 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 3 cut(s) 134, 640, 1002
BsaWI WCCGGW 3 cut(s) 457, 502, 597
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 686, 716
Bse1I ACTGG 2 cut(s) 258, 993
BseDI CCNNGG 3 cut(s) 134, 640, 1002
BseGI GGATG 2 cut(s) 431, 863
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 258, 993
BseRI GAGGAG 3 cut(s) 43, 248, 314
BseXI GCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 1038
BshFI GGCC 5 cut(s) 621, 841, 871, 897, 1082
BsiSI CCGG 4 cut(s) 157, 458, 503, 598
BslFI GGGAC 3 cut(s) 388, 695, 784
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 3 cut(s) 388, 695, 784
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 5 cut(s) 621, 841, 871, 897, 1082
Bso31I GGTCTC 1 cut(s) 391
Bsp143I GATC 4 cut(s) 614, 644, 730, 900
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 2 cut(s) 383, 854
BspANI GGCC 5 cut(s) 621, 841, 871, 897, 1082
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 5 cut(s) 210, 376, 646, 711, 1112
BspMI ACCTGC 1 cut(s) 237
BspPI GGATC 3 cut(s) 639, 652, 895
BspTNI GGTCTC 1 cut(s) 391
BsrI ACTGG 2 cut(s) 258, 993
BssECI CCNNGG 3 cut(s) 134, 640, 1002
BssMI GATC 4 cut(s) 614, 644, 730, 900
BssT1I CCWWGG 2 cut(s) 134, 640
Bst4CI ACNGT 3 cut(s) 739, 935, 1076
Bst6I CTCTTC 2 cut(s) 101, 264
BstAPI GCANNNNNTGC 2 cut(s) 350, 1025
BstDEI CTNAG 3 cut(s) 192, 390, 446
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 2 cut(s) 431, 863
BstKTI GATC 4 cut(s) 617, 647, 733, 903
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 4 cut(s) 614, 644, 730, 900
BstMWI GCNNNNNNNGC 4 cut(s) 350, 494, 722, 1025
BstNSI RCATGY 2 cut(s) 610, 1106
BstSCI CCNGG 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 1075
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 1 cut(s) 644
BstYI RGATCY 1 cut(s) 644
BsuRI GGCC 5 cut(s) 621, 841, 871, 897, 1082
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 2 cut(s) 431, 863
BtsIMutI CAGTG 1 cut(s) 189
BveI ACCTGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 1025
Cfr13I GGNCC 5 cut(s) 375, 709, 839, 1080, 1111
CseI GACGC 1 cut(s) 439
Csp6I GTAC 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 398, 433
CviAII CATG 5 cut(s) 422, 607, 641, 881, 1103
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 3 cut(s) 192, 390, 446
DpnI GATC 4 cut(s) 616, 646, 732, 902
DpnII GATC 4 cut(s) 614, 644, 730, 900
EaeI YGGCCR 1 cut(s) 869
Eam1104I CTCTTC 2 cut(s) 101, 264
EarI CTCTTC 2 cut(s) 101, 264
Eco130I CCWWGG 2 cut(s) 134, 640
Eco147I AGGCCT 1 cut(s) 621
Eco31I GGTCTC 1 cut(s) 391
Eco47I GGWCC 3 cut(s) 375, 709, 1111
EcoO109I RGGNCCY 2 cut(s) 375, 1080
EcoT14I CCWWGG 2 cut(s) 134, 640
ErhI CCWWGG 2 cut(s) 134, 640
FaeI CATG 5 cut(s) 425, 610, 644, 884, 1106
FalI AAGNNNNNCTT 2 cut(s) 1030, 1062
FaqI GGGAC 3 cut(s) 388, 695, 784
FatI CATG 5 cut(s) 421, 606, 640, 880, 1102
FauI CCCGC 1 cut(s) 847
FauNDI CATATG 2 cut(s) 478, 892
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 2 cut(s) 438, 870
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 545
GluI GCNGC 1 cut(s) 24
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 5 cut(s) 621, 841, 871, 897, 1082
HapII CCGG 4 cut(s) 157, 458, 503, 598
HgaI GACGC 1 cut(s) 439
Hin1II CATG 5 cut(s) 425, 610, 644, 884, 1106
HinfI GANTC 4 cut(s) 797, 989, 1022, 1092
HpaII CCGG 4 cut(s) 157, 458, 503, 598
HphI GGTGA 2 cut(s) 33, 532
Hpy166II GTNNAC 3 cut(s) 6, 633, 931
Hpy188I TCNGA 5 cut(s) 268, 298, 614, 1003, 1091
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 3 cut(s) 6, 633, 931
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 4 cut(s) 48, 67, 211, 566
HpyCH4III ACNGT 3 cut(s) 739, 935, 1076
HpyCH4IV ACGT 1 cut(s) 1062
HpyCH4V TGCA 5 cut(s) 105, 230, 476, 986, 1019
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 494, 722, 1025
HpyF3I CTNAG 3 cut(s) 192, 390, 446
HpySE526I ACGT 1 cut(s) 1062
Hsp92II CATG 5 cut(s) 425, 610, 644, 884, 1106
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 4 cut(s) 614, 644, 730, 900
LmnI GCTCC 2 cut(s) 235, 940
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 2 cut(s) 771, 1016
MaeI CTAG 1 cut(s) 545
MaeII ACGT 1 cut(s) 1062
MaeIII GTNAC 6 cut(s) 187, 249, 886, 952, 1058, 1070
MalI GATC 4 cut(s) 616, 646, 732, 902
MboI GATC 4 cut(s) 614, 644, 730, 900
MboII GAAGA 6 cut(s) 88, 91, 281, 1002, 1023, 1038
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 1 cut(s) 644
MlsI TGGCCA 1 cut(s) 871
MluCI AATT 4 cut(s) 345, 466, 668, 821
MluNI TGGCCA 1 cut(s) 871
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 2 cut(s) 246, 276
Mox20I TGGCCA 1 cut(s) 871
MroXI GAANNNNTTC 1 cut(s) 273
MscI TGGCCA 1 cut(s) 871
MseI TTAA 3 cut(s) 258, 348, 1097
Msp20I TGGCCA 1 cut(s) 871
MspI CCGG 4 cut(s) 157, 458, 503, 598
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 466
Mva1269I GAATGC 1 cut(s) 988
MwoI GCNNNNNNNGC 4 cut(s) 350, 494, 722, 1025
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 640
NdeI CATATG 2 cut(s) 478, 892
NdeII GATC 4 cut(s) 614, 644, 730, 900
NlaIII CATG 5 cut(s) 425, 610, 644, 884, 1106
NlaIV GGNNCC 5 cut(s) 210, 376, 646, 711, 1112
NmuCI GTSAC 2 cut(s) 187, 1058
NspI RCATGY 2 cut(s) 610, 1106
PceI AGGCCT 1 cut(s) 621
PciI ACATGT 1 cut(s) 1102
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PctI GAATGC 1 cut(s) 988
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 989, 1022, 1092
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
PpuMI RGGWCCY 1 cut(s) 375
PscI ACATGT 1 cut(s) 1102
PshBI ATTAAT 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 375
PspN4I GGNNCC 5 cut(s) 210, 376, 646, 711, 1112
PspPI GGNCC 5 cut(s) 375, 709, 839, 1080, 1111
PspPPI RGGWCCY 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 1 cut(s) 644
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
SaqAI TTAA 3 cut(s) 258, 348, 1097
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 4 cut(s) 614, 644, 730, 900
Sau96I GGNCC 5 cut(s) 375, 709, 839, 1080, 1111
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 1 cut(s) 157
SfaNI GCATC 2 cut(s) 771, 1016
SfcI CTRYAG 1 cut(s) 1075
SinI GGWCC 3 cut(s) 375, 709, 1111
Sse9I AATT 4 cut(s) 345, 466, 668, 821
SseBI AGGCCT 1 cut(s) 621
SsiI CCGC 2 cut(s) 383, 854
SspMI CTAG 1 cut(s) 545
StuI AGGCCT 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 2 cut(s) 134, 640
TaaI ACNGT 3 cut(s) 739, 935, 1076
TaiI ACGT 1 cut(s) 1065
TaqI TCGA 3 cut(s) 287, 405, 795
TaqII GACCGA 1 cut(s) 175
TasI AATT 4 cut(s) 345, 466, 668, 821
TfiI GAWTC 3 cut(s) 989, 1022, 1092
Tru1I TTAA 3 cut(s) 258, 348, 1097
Tru9I TTAA 3 cut(s) 258, 348, 1097
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 2 cut(s) 187, 1058
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 2 cut(s) 187, 1058
TspDTI ATGAA 2 cut(s) 495, 834
TspRI CASTG 1 cut(s) 196
Tth111I GACNNNGTC 1 cut(s) 292
VpaK11BI GGWCC 3 cut(s) 375, 709, 1111
VspI ATTAAT 1 cut(s) 348
XceI RCATGY 2 cut(s) 610, 1106
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.