Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0017162

Physical Location & Seq

Genomic Coordinates Reverse (-)

1912241 .. 1914502

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g02560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGTCGTTTTGCGCCTTTAAGCTTAACATCAGCGTCGTCCCTGAGATGGCTCTCGCGAGGAGAGTCTCTCTCTTTCCACTTCCCGCCAAATTCCTGACGTTGGCTCCCAAAACGGCGACGTCTCATGATTTTGAAACTCCGGCGTCGTTTTCATTCACCTTCCTCCGTCACTACTGTTCGTCTCCTCTCCGTCTAGACCCATACTGCTACGACGACCAACACCTCCGTCACGGCCACGACCCGGACTCCTTCTTCGCGTCTCTGATCGATAGTTCGACCCGAAAGAGCCAGTTGGGTCAAATCCATGCCCAGTTAGTTGTATTAGGTTTGATAGACAGTGGCTTTTTGATCACCAAATTGGTCAATGCAAGCTCGAATCTCGGGTATATTTGGTACGCCCGCCAAGTGTTTGATGAATTTACTGACCCAGATGTGTTTCAGTGGAACGCGATCATTAGGTGTTATTCTAGGCACAATGTGTTTTCTCAGGCTATAGAAATGTATTCTAGGATGCAAGTAATGGGTGTCAGTCCAGATGGGTTTACTTTTCCTCATGTGCTTAAAGCTTGCAGTGGCATGCCGGACCTCGAAATGGGTCGACGGGTTCATGGACAGGTGTTTAGACATGGGTTTGAATCAGATGTGTTTGTGCAGAATGGTCTCGTGGCGTTGTATGCTAAATGTGGTCGAATAGATCGTGCTAGGGCTGTGTTTGATGGTTTAGCTGAGAGGACGGTTGTTTCCTGGACTTCGATGATTTCGGGGCATGCCCAGAATGGCCAGCCTTTGGAAGCTTTGAGAATTTTTGGTCTGATGAGAAAATTGAATGTGAAACCTGATTGGATCGTTCTTGTTAGTGTTCTAAAAGCTTATACTGATGTAGAAGACTTGGGACAGGGGACATCTGTTCATGGTTGTTTGATTAAAATGGGTCTTGAATTTGAACCTGACTTGCTCATTGCACTCACGGCAATGTATGCAAAAAGTGGGCAGGTGATGGCTGCCAGATCGTTTTTTGATCAGATGCAAACGCCGAACGTAATACTGTGGAATGCTATGATATCTGGTTATGCGAAGAATGGTTATGCTAACGAGGCTGTAGAGCTATTCCGGGAGATGATCACAAAAAATTGTAGAACAGATTCAATAACAATGAGGTCTGCTATTTCTGCATGCGCCCAGGTGGGTTCCCTTGACCTAGCAAAATGGATGGACGATTATATCAATAAAAGTGAGTATAGAAATAATGTCTTTGTTAACACAGCCCTAATTGATATGTATGCAAAATGTGGAAGTACCAATTTTGCTCGAATGGTTTTTGATAGAACGCCTAATAAAGATGTTGTAGTGTGGAGTGCAATGATCGTGGGCTACGGATTACATGGTCGAGCACAAGAAGCCATCGATCTTTTCCATTCTATGCAGCAGGCAGGAGTGCCGCCCAATGATGTCACCTTCCTAGGGCTCCTCACTGCATGCAACCATTCAGGCCTTGTTGAGGAAGGATGGGAGCTGTTCCACCGCATGGTAAACTGCGGGATTGAGCCTGGAAACCAACATTATTCTTGTGTGGTTGATCTTCTTGGACGTGCAGGCCGCTTGGATCAAGCTTACGATTTTATCAGAAAGATGCCAATTGAACCTGGTATAAGTGTATGGGGAGCACTTCTGAGTTCATGCAAGATTTATCGTCATGTAACTTTGGGAGAATACGCTGCAGAACAGCTTTTCTCTATAGATCCATATAATACAGGGCATTATGTTCAACTCTCAAATCTTTATGCTTCAGCCCGTTTATGGGATCATGTTGCAAAGGTACGAGTATTGATGAGGGAAAAAGGACTGATCAAGGACCTTGGACATAGTTTGATTGAGGTCAATGGGAAGCTTCAGGCATTTCATGTGGGAGACAAGTCTCATCCAAGGTCTAAGGAAATTTATGAAGAGCTCGAAAGTCTGGAGAGGAGGTTGAAGGAGGCAGGATTCATCCCGCATACAGATTCTGTTCTGCATGATTTGAATCATGAAGAGACAGAAGAGACACTTTGTAATCACAGCGAGAGGCTGGCAATTGCTTATGGCCTCATCAGCACTGCTCCAGGAACTACACTTCGGATAACCAAAAATCTTCGAGCATGTGTGAATTGTCATTCAGCAACCAAGCTAATATCGAAGCTTGTCAACAGGGAGATAGTTGTTAGGGATGCAAAGCGTTTTCATCATTTCAAGGATGGATGTTGTTCCTGTGGAGATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase HLH PPR PPR_2

Protein Analysis

754

Amino Acids

84.67

Weight (kDa)

6.87

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	143 - 190	1.7e-09	PPR repeat family
PPR_2	PF13041	245 - 290	8.1e-08	PPR repeat family
PPR	PF01535	247 - 277	1e-07	PPR repeat
PPR_2	PF13041	345 - 393	9.9e-13	PPR repeat family
PPR_1	PF12854	345 - 373	2.3e-08	PPR repeat
PPR	PF01535	349 - 378	1.1e-09	PPR repeat
PPR_2	PF13041	446 - 493	1e-10	PPR repeat family
PPR	PF01535	449 - 479	3.7e-06	PPR repeat
E_motif	PF20431	563 - 625	3.7e-13	E motif
Eplus_motif	PF20430	633 - 657	1.8e-09	E+ motif
DYW_deaminase	PF14432	661 - 753	2.3e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12770
fragaria_vesca	FvH4_6g08230
malus_domestica	MD09G1101900.v1.1
prunus_persica	Prupe.3G223800_v2.0.a1
pyrus_communis	pycom09g02560
rosa_chinensis	RchiOBHm_Chr3g0458151
rosa_multiflora	Rmu_co8353983.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421260
rosa_rugosa	Rorug03G0025100
rosa_samantha	Rh3AG085800 Rh3BG088500 Rh3DG089500
rosa_wichuraiana	Rw3G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	982
AatII	GACGTC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	982
AccB7I	CCANNNNNTGG	2 cut(s)	787, 1525
AccI	GTMKAC	1 cut(s)	598
AccII	CGCG	3 cut(s)	56, 257, 449
AciI	CCGC	7 cut(s)	84, 400, 1439, 1522, 1536, 1597, 1991
AclWI	GGATC	4 cut(s)	851, 1611, 1733, 1809
AcoI	YGGCCR	2 cut(s)	232, 778
AcsI	RAATTY	5 cut(s)	89, 416, 801, 938, 1935
AcuI	CTGAAG	2 cut(s)	1770, 1874
AcyI	GRCGYC	2 cut(s)	119, 143
AdeI	CACNNNGTG	1 cut(s)	478
AfaI	GTAC	3 cut(s)	395, 1297, 1818
AjiI	CACGTC	1 cut(s)	1589
AjnI	CCWGG	5 cut(s)	743, 1179, 1546, 1642, 2098
Alw21I	GWGCWC	3 cut(s)	1393, 1666, 1950
Alw26I	GTCTC	9 cut(s)	70, 126, 186, 264, 665, 1902, 1920, 2024, 2033
AlwI	GGATC	4 cut(s)	851, 1611, 1733, 1809
AlwNI	CAGNNNCTG	1 cut(s)	2003
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	5 cut(s)	232, 778, 1489, 1594, 2080
ApeKI	GCWGC	3 cut(s)	1001, 1423, 1715
ApoI	RAATTY	5 cut(s)	89, 416, 801, 938, 1935
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
Asp700I	GAANNNNTTC	1 cut(s)	1141
AspA2I	CCTAGG	1 cut(s)	1459
AspLEI	GCGC	2 cut(s)	14, 1178
AspS9I	GGNCC	2 cut(s)	583, 1852
AsuC2I	CCSGG	2 cut(s)	242, 1112
AsuHPI	GGTGA	4 cut(s)	148, 343, 1006, 1444
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	583, 1852
AvrII	CCTAGG	1 cut(s)	1459
BalI	TGGCCA	1 cut(s)	780
BanII	GRGCYC	2 cut(s)	1467, 1950
BauI	CACGAG	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	3 cut(s)	1393, 1666, 1950
BbvI	GCAGC	3 cut(s)	988, 1435, 1702
BccI	CCATC	8 cut(s)	40, 530, 710, 991, 1204, 1409, 1500, 2225
BceAI	ACGGC	3 cut(s)	129, 247, 984
BciT130I	CCWGG	5 cut(s)	745, 1181, 1548, 1644, 2100
BclI	TGATCA	4 cut(s)	348, 1018, 1119, 1845
BcnI	CCSGG	2 cut(s)	242, 1112
BcoDI	GTCTC	9 cut(s)	70, 126, 186, 264, 665, 1902, 1920, 2024, 2033
BfaI	CTAG	6 cut(s)	194, 468, 507, 702, 1199, 1460
BfmI	CTRYAG	4 cut(s)	492, 1098, 1716, 1734
BfuAI	ACCTGC	1 cut(s)	982
BisI	GCNGC	5 cut(s)	1002, 1424, 1439, 1597, 1716
BlnI	CCTAGG	1 cut(s)	1459
BlsI	GCNGC	5 cut(s)	1003, 1425, 1440, 1598, 1717
Bme1390I	CCNGG	7 cut(s)	242, 745, 1112, 1181, 1548, 1644, 2100
Bme18I	GGWCC	2 cut(s)	583, 1852
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	1589
BmgT120I	GGNCC	2 cut(s)	583, 1852
BmiI	GGNNCC	3 cut(s)	105, 1189, 1466
BmrFI	CCNGG	7 cut(s)	242, 745, 1112, 1181, 1548, 1644, 2100
BmrI	ACTGGG	1 cut(s)	304
BmsI	GCATC	4 cut(s)	501, 1014, 1620, 2194
BmuI	ACTGGG	1 cut(s)	304
BpiI	GAAGAC	1 cut(s)	891
BplI	GAGNNNNNCTC	4 cut(s)	52, 84, 54, 86
BpmI	CTGGAG	2 cut(s)	1979, 2082
BpuMI	CCSGG	2 cut(s)	242, 1112
Bsa29I	ATCGAT	2 cut(s)	267, 1404
BsaBI	GATNNNNATC	1 cut(s)	2019
BsaHI	GRCGYC	2 cut(s)	119, 143
BsaI	GGTCTC	1 cut(s)	665
BsaJI	CCNNGG	4 cut(s)	1179, 1459, 1855, 1922
BsaXI	ACNNNNNCTCC	6 cut(s)	88, 118, 230, 260, 1952, 1982
Bse1I	ACTGG	3 cut(s)	289, 310, 2261
Bse3DI	GCAATG	3 cut(s)	957, 978, 1365
Bse8I	GATNNNNATC	1 cut(s)	2019
BseBI	CCWGG	5 cut(s)	745, 1181, 1548, 1644, 2100
BseCI	ATCGAT	2 cut(s)	267, 1404
BseDI	CCNNGG	4 cut(s)	1179, 1459, 1855, 1922
BseGI	GGATG	8 cut(s)	516, 1215, 1511, 1918, 1986, 2209, 2236, 2240
BseJI	GATNNNNATC	1 cut(s)	2019
BseMI	GCAATG	3 cut(s)	957, 978, 1365
BseMII	CTCAG	4 cut(s)	33, 500, 717, 1661
BseNI	ACTGG	3 cut(s)	289, 310, 2261
BseRI	GAGGAG	4 cut(s)	73, 174, 1457, 1978
BseXI	GCAGC	3 cut(s)	988, 1435, 1702
BsgI	GTGCAG	2 cut(s)	671, 1611
Bsh1236I	CGCG	3 cut(s)	56, 257, 449
BshFI	GGCC	5 cut(s)	234, 780, 1491, 1596, 2082
BshVI	ATCGAT	2 cut(s)	267, 1404
BsiHKAI	GWGCWC	3 cut(s)	1393, 1666, 1950
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	4 cut(s)	140, 242, 581, 1111
BslFI	GGGAC	3 cut(s)	23, 906, 913
BsmAI	GTCTC	9 cut(s)	70, 126, 186, 264, 665, 1902, 1920, 2024, 2033
BsmBI	CGTCTC	3 cut(s)	126, 186, 264
BsmFI	GGGAC	3 cut(s)	23, 906, 913
BsmI	GAATGC	1 cut(s)	1057
BsnI	GGCC	5 cut(s)	234, 780, 1491, 1596, 2082
Bso31I	GGTCTC	1 cut(s)	665
BsoBI	CYCGRG	1 cut(s)	380
Bsp1286I	GDGCHC	4 cut(s)	1393, 1467, 1666, 1950
Bsp68I	TCGCGA	1 cut(s)	56
BspACI	CCGC	7 cut(s)	84, 400, 1439, 1522, 1536, 1597, 1991
BspANI	GGCC	5 cut(s)	234, 780, 1491, 1596, 2082
BspCNI	CTCAG	4 cut(s)	34, 499, 718, 1662
BspDI	ATCGAT	2 cut(s)	267, 1404
BspFNI	CGCG	3 cut(s)	56, 257, 449
BspHI	TCATGA	2 cut(s)	124, 2023
BspLI	GGNNCC	3 cut(s)	105, 1189, 1466
BspMAI	CTGCAG	1 cut(s)	1720
BspMI	ACCTGC	1 cut(s)	982
BspPI	GGATC	4 cut(s)	851, 1611, 1733, 1809
BspQI	GCTCTTC	1 cut(s)	1938
BspTNI	GGTCTC	1 cut(s)	665
BsrDI	GCAATG	3 cut(s)	957, 978, 1365
BsrI	ACTGG	3 cut(s)	289, 310, 2261
BssECI	CCNNGG	4 cut(s)	1179, 1459, 1855, 1922
BssNI	GRCGYC	2 cut(s)	119, 143
BssSI	CACGAG	1 cut(s)	662
BssT1I	CCWWGG	3 cut(s)	1459, 1855, 1922
Bst2BI	CACGAG	1 cut(s)	662
Bst2UI	CCWGG	5 cut(s)	745, 1181, 1548, 1644, 2100
Bst4CI	ACNGT	4 cut(s)	176, 338, 736, 1047
Bst6I	CTCTTC	3 cut(s)	1938, 2022, 2031
BstACI	GRCGYC	2 cut(s)	119, 143
BstAPI	GCANNNNNTGC	1 cut(s)	977
BstDEI	CTNAG	5 cut(s)	42, 486, 726, 1670, 1929
BstENI	CCTNNNNNAGG	1 cut(s)	1496
BstF5I	GGATG	8 cut(s)	516, 1215, 1511, 1918, 1986, 2209, 2236, 2240
BstFNI	CGCG	3 cut(s)	56, 257, 449
BstHHI	GCGC	2 cut(s)	14, 1178
BstMAI	GTCTC	9 cut(s)	70, 126, 186, 264, 665, 1902, 1920, 2024, 2033
BstMWI	GCNNNNNNNGC	7 cut(s)	674, 968, 977, 1094, 1169, 1397, 2088
BstNI	CCWGG	5 cut(s)	745, 1181, 1548, 1644, 2100
BstNSI	RCATGY	5 cut(s)	580, 770, 1176, 1479, 2139
BstSCI	CCNGG	7 cut(s)	240, 743, 1110, 1179, 1546, 1642, 2098
BstSFI	CTRYAG	4 cut(s)	492, 1098, 1716, 1734
BstUI	CGCG	3 cut(s)	56, 257, 449
BstV1I	GCAGC	3 cut(s)	988, 1435, 1702
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	1 cut(s)	1738
BstYI	RGATCY	1 cut(s)	1738
Bsu15I	ATCGAT	2 cut(s)	267, 1404
BsuRI	GGCC	5 cut(s)	234, 780, 1491, 1596, 2082
BsuTUI	ATCGAT	2 cut(s)	267, 1404
BtrI	CACGTC	1 cut(s)	1589
BtsCI	GGATG	8 cut(s)	516, 1215, 1511, 1918, 1986, 2209, 2236, 2240
BtsI	GCAGTG	3 cut(s)	577, 1470, 2091
BtsIMutI	CAGTG	5 cut(s)	343, 446, 577, 1470, 2091
BtuMI	TCGCGA	1 cut(s)	56
BveI	ACCTGC	1 cut(s)	982
CaiI	CAGNNNCTG	1 cut(s)	2003
CciI	TCATGA	2 cut(s)	124, 2023
CfoI	GCGC	2 cut(s)	14, 1178
Cfr13I	GGNCC	2 cut(s)	583, 1852
ClaI	ATCGAT	2 cut(s)	267, 1404
CseI	GACGC	3 cut(s)	22, 132, 246
CsiI	ACCWGGT	1 cut(s)	1642
Csp6I	GTAC	3 cut(s)	394, 1296, 1817
CspCI	CAANNNNNGTGG	2 cut(s)	1347, 1382
CviQI	GTAC	3 cut(s)	394, 1296, 1817
DdeI	CTNAG	5 cut(s)	42, 486, 726, 1670, 1929
DraIII	CACNNNGTG	1 cut(s)	478
EaeI	YGGCCR	2 cut(s)	232, 778
Eam1104I	CTCTTC	3 cut(s)	1938, 2022, 2031
EarI	CTCTTC	3 cut(s)	1938, 2022, 2031
Ecl136II	GAGCTC	1 cut(s)	1948
Eco130I	CCWWGG	3 cut(s)	1459, 1855, 1922
Eco147I	AGGCCT	1 cut(s)	1491
Eco24I	GRGCYC	2 cut(s)	1467, 1950
Eco31I	GGTCTC	1 cut(s)	665
Eco32I	GATATC	1 cut(s)	1062
Eco47I	GGWCC	2 cut(s)	583, 1852
Eco53kI	GAGCTC	1 cut(s)	1948
Eco57I	CTGAAG	2 cut(s)	1770, 1874
Eco88I	CYCGRG	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	1948
EcoNI	CCTNNNNNAGG	1 cut(s)	1496
EcoO109I	RGGNCCY	1 cut(s)	1852
EcoRII	CCWGG	5 cut(s)	743, 1179, 1546, 1642, 2098
EcoRV	GATATC	1 cut(s)	1062
EcoT14I	CCWWGG	3 cut(s)	1459, 1855, 1922
EcoT38I	GRGCYC	2 cut(s)	1467, 1950
ErhI	CCWWGG	3 cut(s)	1459, 1855, 1922
Esp3I	CGTCTC	3 cut(s)	126, 186, 264
FalI	AAGNNNNNCTT	2 cut(s)	2028, 2060
FaqI	GGGAC	3 cut(s)	23, 906, 913
FauI	CCCGC	4 cut(s)	91, 407, 1529, 1998
FbaI	TGATCA	4 cut(s)	348, 1018, 1119, 1845
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	5 cut(s)	1002, 1424, 1439, 1597, 1716
FokI	GGATG	8 cut(s)	523, 1222, 1518, 1905, 1973, 2216, 2243, 2247
FriOI	GRGCYC	2 cut(s)	1467, 1950
Fsp4HI	GCNGC	5 cut(s)	1002, 1424, 1439, 1597, 1716
FspBI	CTAG	6 cut(s)	194, 468, 507, 702, 1199, 1460
GlaI	GCGC	2 cut(s)	13, 1177
GluI	GCNGC	5 cut(s)	1002, 1424, 1439, 1597, 1716
GsuI	CTGGAG	2 cut(s)	1979, 2082
HaeIII	GGCC	5 cut(s)	234, 780, 1491, 1596, 2082
HapII	CCGG	4 cut(s)	140, 242, 581, 1111
HgaI	GACGC	3 cut(s)	22, 132, 246
HhaI	GCGC	2 cut(s)	14, 1178
Hin1I	GRCGYC	2 cut(s)	119, 143
Hin6I	GCGC	2 cut(s)	12, 1176
HinP1I	GCGC	2 cut(s)	12, 1176
HincII	GTYRAC	3 cut(s)	599, 1258, 2182
HindII	GTYRAC	3 cut(s)	599, 1258, 2182
HindIII	AAGCTT	7 cut(s)	20, 564, 792, 867, 1608, 1886, 2174
HinfI	GANTC	8 cut(s)	63, 245, 376, 635, 1142, 1983, 2000, 2020
HpaI	GTTAAC	1 cut(s)	1258
HpaII	CCGG	4 cut(s)	140, 242, 581, 1111
HphI	GGTGA	4 cut(s)	148, 343, 1006, 1444
Hpy166II	GTNNAC	5 cut(s)	543, 599, 1258, 1531, 2182
Hpy188I	TCNGA	7 cut(s)	264, 640, 813, 1023, 1625, 1671, 2115
Hpy188III	TCNNGA	8 cut(s)	55, 94, 125, 194, 533, 935, 1958, 2024
Hpy8I	GTNNAC	5 cut(s)	543, 599, 1258, 1531, 2182
Hpy99I	CGWCG	5 cut(s)	38, 121, 148, 215, 603
HpyAV	CCTTC	5 cut(s)	169, 259, 1465, 1496, 1966
HpyCH4III	ACNGT	4 cut(s)	176, 338, 736, 1047
HpyCH4IV	ACGT	4 cut(s)	98, 119, 1038, 1588
HpyF10VI	GCNNNNNNNGC	7 cut(s)	674, 968, 977, 1094, 1169, 1397, 2088
HpyF3I	CTNAG	5 cut(s)	42, 486, 726, 1670, 1929
HpySE526I	ACGT	4 cut(s)	98, 119, 1038, 1588
Hsp92I	GRCGYC	2 cut(s)	119, 143
HspAI	GCGC	2 cut(s)	12, 1176
Ksp22I	TGATCA	4 cut(s)	348, 1018, 1119, 1845
KspAI	GTTAAC	1 cut(s)	1258
LguI	GCTCTTC	1 cut(s)	1938
LmnI	GCTCC	5 cut(s)	109, 1470, 1510, 1661, 2101
Lsp1109I	GCAGC	3 cut(s)	988, 1435, 1702
LweI	GCATC	4 cut(s)	501, 1014, 1620, 2194
MabI	ACCWGGT	1 cut(s)	1642
MaeI	CTAG	6 cut(s)	194, 468, 507, 702, 1199, 1460
MaeII	ACGT	4 cut(s)	98, 119, 1038, 1588
MaeIII	GTNAC	4 cut(s)	167, 227, 1450, 1696
MboII	GAAGA	8 cut(s)	244, 896, 1087, 1571, 1955, 2039, 2048, 2120
MfeI	CAATTG	2 cut(s)	1635, 2070
MflI	RGATCY	1 cut(s)	1738
MhlI	GDGCHC	4 cut(s)	1393, 1467, 1666, 1950
MlsI	TGGCCA	1 cut(s)	780
MluNI	TGGCCA	1 cut(s)	780
MlyI	GAGTC	2 cut(s)	72, 239
Mox20I	TGGCCA	1 cut(s)	780
MroXI	GAANNNNTTC	1 cut(s)	1141
MscI	TGGCCA	1 cut(s)	780
MseI	TTAA	5 cut(s)	18, 24, 561, 924, 1257
MslI	CAYNNNNRTG	1 cut(s)	971
Msp20I	TGGCCA	1 cut(s)	780
MspI	CCGG	4 cut(s)	140, 242, 581, 1111
MspR9I	CCNGG	7 cut(s)	242, 745, 1112, 1181, 1548, 1644, 2100
MunI	CAATTG	2 cut(s)	1635, 2070
Mva1269I	GAATGC	1 cut(s)	1057
MvaI	CCWGG	5 cut(s)	745, 1181, 1548, 1644, 2100
MvnI	CGCG	3 cut(s)	56, 257, 449
MwoI	GCNNNNNNNGC	7 cut(s)	674, 968, 977, 1094, 1169, 1397, 2088
NciI	CCSGG	2 cut(s)	242, 1112
NlaIV	GGNNCC	3 cut(s)	105, 1189, 1466
NmuCI	GTSAC	3 cut(s)	167, 227, 1450
NruI	TCGCGA	1 cut(s)	56
NspI	RCATGY	5 cut(s)	580, 770, 1176, 1479, 2139
PaeI	GCATGC	4 cut(s)	580, 770, 1176, 1479
PagI	TCATGA	2 cut(s)	124, 2023
PaqCI	CACCTGC	1 cut(s)	982
PceI	AGGCCT	1 cut(s)	1491
PciSI	GCTCTTC	1 cut(s)	1938
PcsI	WCGNNNNNNNCGW	1 cut(s)	694
PctI	GAATGC	1 cut(s)	1057
PdmI	GAANNNNTTC	1 cut(s)	1141
PfeI	GAWTC	6 cut(s)	376, 635, 1142, 1983, 2000, 2020
PflMI	CCANNNNNTGG	2 cut(s)	787, 1525
PfoI	TCCNGGA	3 cut(s)	743, 1110, 2098
PkrI	GCNGC	5 cut(s)	1003, 1425, 1440, 1598, 1717
PleI	GAGTC	2 cut(s)	71, 239
PpsI	GAGTC	2 cut(s)	71, 239
PpuMI	RGGWCCY	1 cut(s)	1852
Psp124BI	GAGCTC	1 cut(s)	1950
Psp5II	RGGWCCY	1 cut(s)	1852
Psp6I	CCWGG	5 cut(s)	743, 1179, 1546, 1642, 2098
PspGI	CCWGG	5 cut(s)	743, 1179, 1546, 1642, 2098
PspN4I	GGNNCC	3 cut(s)	105, 1189, 1466
PspPI	GGNCC	2 cut(s)	583, 1852
PspPPI	RGGWCCY	1 cut(s)	1852
PstI	CTGCAG	1 cut(s)	1720
PstNI	CAGNNNCTG	1 cut(s)	2003
PsuI	RGATCY	1 cut(s)	1738
RruI	TCGCGA	1 cut(s)	56
RsaI	GTAC	3 cut(s)	395, 1297, 1818
RsaNI	GTAC	3 cut(s)	394, 1296, 1817
RseI	CAYNNNNRTG	1 cut(s)	971
SacI	GAGCTC	1 cut(s)	1950
SalI	GTCGAC	1 cut(s)	597
SapI	GCTCTTC	1 cut(s)	1938
SaqAI	TTAA	5 cut(s)	18, 24, 561, 924, 1257
SatI	GCNGC	5 cut(s)	1002, 1424, 1439, 1597, 1716
Sau96I	GGNCC	2 cut(s)	583, 1852
SchI	GAGTC	2 cut(s)	72, 239
ScrFI	CCNGG	7 cut(s)	242, 745, 1112, 1181, 1548, 1644, 2100
SduI	GDGCHC	4 cut(s)	1393, 1467, 1666, 1950
SexAI	ACCWGGT	1 cut(s)	1642
SfaNI	GCATC	4 cut(s)	501, 1014, 1620, 2194
SfcI	CTRYAG	4 cut(s)	492, 1098, 1716, 1734
SinI	GGWCC	2 cut(s)	583, 1852
SmiMI	CAYNNNNRTG	1 cut(s)	971
SphI	GCATGC	4 cut(s)	580, 770, 1176, 1479
SseBI	AGGCCT	1 cut(s)	1491
SsiI	CCGC	7 cut(s)	84, 400, 1439, 1522, 1536, 1597, 1991
SspMI	CTAG	6 cut(s)	194, 468, 507, 702, 1199, 1460
SstI	GAGCTC	1 cut(s)	1950
StuI	AGGCCT	1 cut(s)	1491
StyD4I	CCNGG	7 cut(s)	240, 743, 1110, 1179, 1546, 1642, 2098
StyI	CCWWGG	3 cut(s)	1459, 1855, 1922
TaaI	ACNGT	4 cut(s)	176, 338, 736, 1047
TaiI	ACGT	4 cut(s)	101, 122, 1041, 1591
TauI	GCSGC	2 cut(s)	1441, 1599
TfiI	GAWTC	6 cut(s)	376, 635, 1142, 1983, 2000, 2020
Tru1I	TTAA	5 cut(s)	18, 24, 561, 924, 1257
Tru9I	TTAA	5 cut(s)	18, 24, 561, 924, 1257
TscAI	CASTG	5 cut(s)	343, 446, 577, 1477, 2098
TseFI	GTSAC	3 cut(s)	167, 227, 1450
TseI	GCWGC	3 cut(s)	1001, 1423, 1715
Tsp45I	GTSAC	3 cut(s)	167, 227, 1450
TspGWI	ACGGA	4 cut(s)	155, 179, 215, 1389
TspRI	CASTG	5 cut(s)	343, 446, 577, 1477, 2098
Van91I	CCANNNNNTGG	2 cut(s)	787, 1525
VpaK11BI	GGWCC	2 cut(s)	583, 1852
XagI	CCTNNNNNAGG	1 cut(s)	1496
XapI	RAATTY	5 cut(s)	89, 416, 801, 938, 1935
XbaI	TCTAGA	1 cut(s)	193
XceI	RCATGY	5 cut(s)	580, 770, 1176, 1479, 2139
XmaJI	CCTAGG	1 cut(s)	1459
XmiI	GTMKAC	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	1141
XspI	CTAG	6 cut(s)	194, 468, 507, 702, 1199, 1460
ZraI	GACGTC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.