Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0017162

Physical Location & Seq

Genomic Coordinates Reverse (-)

42484073 .. 42488271

Gene Structure 4199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2214 bp

ATGAAATTTGGCTACTCCGTGGTGATGGGTGTGAGTTTGACTCTGATCAAGGGAGTCTCTCTGCTTCCTCTTCCCGCCAAATTCCGAACTTGGTCTCAGTTTTCATTCACCTTCTCCAGTCACTATTGCTCATCTCCTCTCAACCTAGACTCATACTTCTCCGACGACCATACTCTCCATTTCACCTACGATTCCGAGTCATTCTTTGCCTCTCTCATCGACAATTCCACCCACAAGAGCCACTTGAATCAAATCCAAGCACAGTTGCTTGTACTGGGTTTCCAAGCCAGCGGCTTTTTAATCACCAAATTAGTGAAGTGCTGCTCAAATCTCGGGTACATTTCATACGCCCGCCAGGTGTTCGATGAATTTACTGACCCGAATGTGTTCCTGTGGAATGCAATCGTTCGGGGCTATTCGAAGCACAATGCGTTTGCTGATGCCGTAGAAATGTATTGTAGGATGCAAGAGACGGGTGTGAGTCCAGATGGTTTTACTTTCCCTCATGTGCTCAAGGCTTGCAGTGGCTTGGCGGCGCTTGAAATGGGCCGCCGGGTTCATTGCCAGGTGTTTCGACATGGGTTTGAGTCGGATGTGTTTGTGCAGAACAGTCTCGTGGCGTTTTATGCCAAATGTGGTAGGATAGAACACGCTAGGATTGTGTTTGATGGGTTGGGTGAGAGGTCGGTTGTTTCGTGGACTTCGATCATTTCAGGGTATGCGCAGAATGGCCAGTCTTTGGAAGCTCTCAGAATTTTTAGTGTGATGAGGGAGTTGAATGTAAGACCGGATTGGATTGTTCTGGTTAGTGTTCTCAAAGCGTATACTGATGTAGAGGACTTGGGACAGGGGAGGTCTGTTCATGGTTGTTTAGTTAAAATGGGACTTGAATTTGAACCTGACTTGGTCATTTCACTCACAGCCATGTATGCAAAAAGTGGGCAGGTGGTGGTTGCCAGATCGTTCTTTGATAAGATGGAAAGACCAAATGTAATGATGTGGAATGCTATGATTTCTGGCTATGCAAAGAACGGTCATGCTGAGAAAGCTGTAGAGCTATTCCGTGAGATGATCTCTAGAAGCATTAGAATTGATTCAATTACTCTGAGGTCTGCTATCTCAGCATGCGCCCAGGTGGGTTCTCTTGAACTAGCGAAATGGATGGATGATTATATCAGCAAAAGTGAGTATATAAATCATGTTTTTGTTAACACAGCCCTAATTGATATGTATGCAAAATGTGGTAGTGTAGATTTTGCTCGCATGGTCTTTGATAGAACACCTAATAAAGATGTTGTCGTCTGGAGTGCAATGATTGTGGGCTATGGATTGCATGGTCGAGGACAAGAAGCCATTGATGTTTACTATTCTATGCAGCAGGCTGGGGTGGTACCAAATGATGTTACCTTTCTTGGACTCCTTATTGCATGCAACCATTCAGGCCTTGTACATGAGGGATGGGAGCTTTTCCACCGCATGAGAGACTATGGGATTGAGCCTGGAAACCATCATTATTCGTGTGTGGTTGATCTTCTGGGACGTGCAGGCCAGTTGGAACAGGCTTATGATTTTATAAAAAAGATGCCAATTGAACCTGGTACAAGTGTATGGGGAGCACTTCTTAGTTCGTGCAAGATCCATCGCAATGTGACTTTGGGAGAATATGCTGCAGAAAAACTTTTCTCATTAGATCCATATGAGATAGGGCATTATGTGCAACTGTCAAATCTCTATGCTTCAGCCCAATTATGGGATCGTGTTGCACATGTGCGAGTACTGATGAGGGAGAAAGGACTGATTAAGGGCCTTGGACATAGTTTGATTGAGATCAATGGAAAACTTCAGGCATTTCATGTAGGAGACAAGTCACATCCAAGGTCTAAGGAAATATATGAAGAGCTTGGGAGTCTAGAGAGGAGGTTGAAGGAGGCTGGATTTGTTCCACATACAGAATCCGTCCTGCATGATTTGAATTATGAAGAGACAGAGGAGACACTTTGCAATCATAGTGAGAGGCTGGCAATTGCTTATGGCCTCATCTGTACTGCTCCTGGATCTACACTAAGAATAACTAAAAACCTACGCGCGTGTGTGAATTGTCATGCAGCAACTAAGCTAATATCTAAGCTTGTCAACAGGGAGATAGTTGTCAGGGATGCAAAGCGTTTCCACCATTTCAAGGATGGATTTTGTTCCTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase HLH PPR PPR_2

Protein Analysis

737

Amino Acids

82.9

Weight (kDa)

6.78

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	127 - 174	3.4e-10	PPR repeat family
PPR_2	PF13041	229 - 274	8.2e-08	PPR repeat family
PPR	PF01535	231 - 261	5.4e-07	PPR repeat
PPR_2	PF13041	329 - 377	6.4e-13	PPR repeat family
PPR_1	PF12854	329 - 357	4.2e-08	PPR repeat
PPR	PF01535	333 - 361	5.3e-10	PPR repeat
PPR_2	PF13041	430 - 477	3.9e-08	PPR repeat family
E_motif	PF20431	547 - 609	4.2e-11	E motif
Eplus_motif	PF20430	617 - 641	2.1e-08	E+ motif
DYW_deaminase	PF14432	645 - 737	6.4e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12770
fragaria_vesca	FvH4_6g08230
malus_domestica	MD09G1101900.v1.1
prunus_persica	Prupe.3G223800_v2.0.a1
pyrus_communis	pycom09g02560
rosa_chinensis	RchiOBHm_Chr3g0458151
rosa_multiflora	Rmu_co8353983.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421260
rosa_rugosa	Rorug03G0025100
rosa_samantha	Rh3AG085800 Rh3BG088500 Rh3DG089500
rosa_wichuraiana	Rw3G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1574
AarI	CACCTGC	1 cut(s)	934
Acc16I	TGCGCA	1 cut(s)	723
Acc36I	ACCTGC	1 cut(s)	934
Acc65I	GGTACC	1 cut(s)	1390
AccB1I	GGYRCC	1 cut(s)	1390
AccB7I	CCANNNNNTGG	1 cut(s)	739
AccI	GTMKAC	1 cut(s)	824
AccII	CGCG	2 cut(s)	2085, 2087
AciI	CCGC	6 cut(s)	75, 291, 352, 533, 550, 1474
AclWI	GGATC	4 cut(s)	1630, 1685, 1761, 2062
AcoI	YGGCCR	1 cut(s)	730
AcsI	RAATTY	5 cut(s)	5, 80, 368, 753, 890
AcuI	CTGAAG	2 cut(s)	1722, 1826
AfaI	GTAC	7 cut(s)	273, 338, 1392, 1449, 1600, 1776, 2044
AfiI	CCNNNNNNNGG	4 cut(s)	739, 1749, 1750, 2179
AflIII	ACRYGT	1 cut(s)	1765
AjiI	CACGTC	1 cut(s)	1541
AjnI	CCWGG	6 cut(s)	354, 564, 1131, 1498, 1594, 2050
AluBI	AGCT	7 cut(s)	746, 1049, 1057, 1465, 1900, 2116, 2128
AluI	AGCT	7 cut(s)	746, 1049, 1057, 1465, 1900, 2116, 2128
Alw21I	GWGCWC	2 cut(s)	513, 1618
Alw26I	GTCTC	8 cut(s)	61, 99, 464, 617, 1476, 1854, 1976, 1985
AlwI	GGATC	4 cut(s)	1630, 1685, 1761, 2062
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	6 cut(s)	547, 730, 1441, 1546, 1804, 2032
ApeKI	GCWGC	4 cut(s)	321, 1375, 1667, 2105
ApoI	RAATTY	5 cut(s)	5, 80, 368, 753, 890
Asp700I	GAANNNNTTC	2 cut(s)	386, 1093
Asp718I	GGTACC	1 cut(s)	1390
AspLEI	GCGC	4 cut(s)	538, 724, 1130, 2087
AspS9I	GGNCC	2 cut(s)	547, 1804
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	5 cut(s)	34, 100, 175, 295, 689
AsuII	TTCGAA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	332
BaeI	ACNNNNGTAYC	2 cut(s)	1590, 1623
BalI	TGGCCA	1 cut(s)	732
BanI	GGYRCC	1 cut(s)	1390
BauI	CACGAG	1 cut(s)	614
Bbv12I	GWGCWC	2 cut(s)	513, 1618
BbvI	GCAGC	4 cut(s)	308, 1387, 1654, 2117
BccI	CCATC	9 cut(s)	19, 482, 662, 970, 1156, 1452, 1515, 1647, 2177
BceAI	ACGGC	1 cut(s)	428
BciT130I	CCWGG	6 cut(s)	356, 566, 1133, 1500, 1596, 2052
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	8 cut(s)	61, 99, 464, 617, 1476, 1854, 1976, 1985
BfaI	CTAG	5 cut(s)	146, 654, 1077, 1151, 1910
BfmI	CTRYAG	2 cut(s)	1050, 1668
BfoI	RGCGCY	1 cut(s)	539
BfuAI	ACCTGC	1 cut(s)	934
BisI	GCNGC	7 cut(s)	292, 322, 534, 550, 1376, 1668, 2106
BlsI	GCNGC	7 cut(s)	293, 323, 535, 551, 1377, 1669, 2107
BmcAI	AGTACT	1 cut(s)	1776
Bme1390I	CCNGG	7 cut(s)	356, 554, 566, 1133, 1500, 1596, 2052
BmeT110I	CYCGRG	1 cut(s)	332
BmgBI	CACGTC	1 cut(s)	1541
BmgT120I	GGNCC	2 cut(s)	547, 1804
BmiI	GGNNCC	1 cut(s)	1392
BmrFI	CCNGG	7 cut(s)	356, 554, 566, 1133, 1500, 1596, 2052
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	4 cut(s)	430, 453, 1572, 2146
BmuI	ACTGGG	1 cut(s)	284
BplI	GAGNNNNNCTC	4 cut(s)	25, 57, 1058, 1090
BpmI	CTGGAG	2 cut(s)	100, 1324
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	1826
BsaI	GGTCTC	1 cut(s)	99
BsaJI	CCNNGG	4 cut(s)	18, 1131, 1807, 1874
BsaWI	WCCGGW	1 cut(s)	787
Bsc4I	CCNNNNNNNGG	4 cut(s)	739, 1749, 1750, 2179
Bse1I	ACTGG	4 cut(s)	117, 279, 733, 1549
Bse3DI	GCAATG	3 cut(s)	559, 1317, 1651
Bse8I	GATNNNNATC	1 cut(s)	1826
BseBI	CCWGG	6 cut(s)	356, 566, 1133, 1500, 1596, 2052
BseDI	CCNNGG	4 cut(s)	18, 1131, 1807, 1874
BseGI	GGATG	8 cut(s)	468, 598, 1167, 1171, 1463, 1870, 2161, 2188
BseJI	GATNNNNATC	1 cut(s)	1826
BseLI	CCNNNNNNNGG	4 cut(s)	739, 1749, 1750, 2179
BseMI	GCAATG	3 cut(s)	559, 1317, 1651
BseMII	CTCAG	5 cut(s)	110, 763, 1032, 1097, 1134
BseNI	ACTGG	4 cut(s)	117, 279, 733, 1549
BseRI	GAGGAG	3 cut(s)	126, 1930, 2003
BseXI	GCAGC	4 cut(s)	308, 1387, 1654, 2117
BseYI	CCCAGC	1 cut(s)	1382
BsgI	GTGCAG	2 cut(s)	623, 1563
Bsh1236I	CGCG	2 cut(s)	2085, 2087
BshFI	GGCC	6 cut(s)	549, 732, 1443, 1548, 1806, 2034
BshNI	GGYRCC	1 cut(s)	1390
BsiHKAI	GWGCWC	2 cut(s)	513, 1618
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	553, 788
BslFI	GGGAC	3 cut(s)	858, 897, 1551
BslI	CCNNNNNNNGG	4 cut(s)	739, 1749, 1750, 2179
BsmAI	GTCTC	8 cut(s)	61, 99, 464, 617, 1476, 1854, 1976, 1985
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	3 cut(s)	858, 897, 1551
BsmI	GAATGC	2 cut(s)	403, 1009
BsnI	GGCC	6 cut(s)	549, 732, 1443, 1548, 1806, 2034
Bso31I	GGTCTC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	332
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	513, 1618
Bsp1407I	TGTACA	1 cut(s)	1447
BspACI	CCGC	6 cut(s)	75, 291, 352, 533, 550, 1474
BspANI	GGCC	6 cut(s)	549, 732, 1443, 1548, 1806, 2034
BspCNI	CTCAG	5 cut(s)	109, 762, 1033, 1098, 1133
BspFNI	CGCG	2 cut(s)	2085, 2087
BspLI	GGNNCC	1 cut(s)	1392
BspMAI	CTGCAG	1 cut(s)	1672
BspMI	ACCTGC	1 cut(s)	934
BspPI	GGATC	4 cut(s)	1630, 1685, 1761, 2062
BspQI	GCTCTTC	1 cut(s)	1890
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	1390
BspTNI	GGTCTC	1 cut(s)	99
BsrDI	GCAATG	3 cut(s)	559, 1317, 1651
BsrGI	TGTACA	1 cut(s)	1447
BsrI	ACTGG	4 cut(s)	117, 279, 733, 1549
BssECI	CCNNGG	4 cut(s)	18, 1131, 1807, 1874
BssNAI	GTATAC	1 cut(s)	825
BssSI	CACGAG	1 cut(s)	614
BssT1I	CCWWGG	2 cut(s)	1807, 1874
Bst1107I	GTATAC	1 cut(s)	825
Bst2BI	CACGAG	1 cut(s)	614
Bst2UI	CCWGG	6 cut(s)	356, 566, 1133, 1500, 1596, 2052
Bst4CI	ACNGT	4 cut(s)	264, 611, 1034, 1722
Bst6I	CTCTTC	3 cut(s)	75, 1890, 1974
BstAPI	GCANNNNNTGC	1 cut(s)	1714
BstAUI	TGTACA	1 cut(s)	1447
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	9 cut(s)	289, 352, 520, 1126, 1261, 1380, 1429, 1546, 2019
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	8 cut(s)	468, 598, 1167, 1171, 1463, 1870, 2161, 2188
BstFNI	CGCG	2 cut(s)	2085, 2087
BstH2I	RGCGCY	1 cut(s)	539
BstHHI	GCGC	4 cut(s)	538, 724, 1130, 2087
BstMAI	GTCTC	8 cut(s)	61, 99, 464, 617, 1476, 1854, 1976, 1985
BstMWI	GCNNNNNNNGC	5 cut(s)	626, 929, 1046, 1121, 1714
BstNI	CCWGG	6 cut(s)	356, 566, 1133, 1500, 1596, 2052
BstNSI	RCATGY	3 cut(s)	1128, 1431, 1769
BstSCI	CCNGG	7 cut(s)	354, 552, 564, 1131, 1498, 1594, 2050
BstSFI	CTRYAG	2 cut(s)	1050, 1668
BstUI	CGCG	2 cut(s)	2085, 2087
BstV1I	GCAGC	4 cut(s)	308, 1387, 1654, 2117
BstX2I	RGATCY	3 cut(s)	1635, 1690, 2054
BstYI	RGATCY	3 cut(s)	1635, 1690, 2054
BstZ17I	GTATAC	1 cut(s)	825
BsuRI	GGCC	6 cut(s)	549, 732, 1443, 1548, 1806, 2034
BtgI	CCRYGG	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	1625
BtrI	CACGTC	1 cut(s)	1541
BtsCI	GGATG	8 cut(s)	468, 598, 1167, 1171, 1463, 1870, 2161, 2188
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	529
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	9 cut(s)	289, 352, 520, 1126, 1261, 1380, 1429, 1546, 2019
CfoI	GCGC	4 cut(s)	538, 724, 1130, 2087
Cfr13I	GGNCC	2 cut(s)	547, 1804
CsiI	ACCWGGT	1 cut(s)	1594
Csp6I	GTAC	7 cut(s)	272, 337, 1391, 1448, 1599, 1775, 2043
CspCI	CAANNNNNGTGG	2 cut(s)	1299, 1334
CviQI	GTAC	7 cut(s)	272, 337, 1391, 1448, 1599, 1775, 2043
EaeI	YGGCCR	1 cut(s)	730
Eam1104I	CTCTTC	3 cut(s)	75, 1890, 1974
EarI	CTCTTC	3 cut(s)	75, 1890, 1974
Eco130I	CCWWGG	2 cut(s)	1807, 1874
Eco147I	AGGCCT	1 cut(s)	1443
Eco31I	GGTCTC	1 cut(s)	99
Eco57I	CTGAAG	2 cut(s)	1722, 1826
Eco88I	CYCGRG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	1804
EcoRII	CCWGG	6 cut(s)	354, 564, 1131, 1498, 1594, 2050
EcoT14I	CCWWGG	2 cut(s)	1807, 1874
ErhI	CCWWGG	2 cut(s)	1807, 1874
Esp3I	CGTCTC	1 cut(s)	464
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FaqI	GGGAC	3 cut(s)	858, 897, 1551
FauI	CCCGC	2 cut(s)	82, 359
FauNDI	CATATG	1 cut(s)	1696
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	824
Fnu4HI	GCNGC	7 cut(s)	292, 322, 534, 550, 1376, 1668, 2106
FokI	GGATG	8 cut(s)	475, 605, 1174, 1178, 1470, 1857, 2168, 2195
Fsp4HI	GCNGC	7 cut(s)	292, 322, 534, 550, 1376, 1668, 2106
FspBI	CTAG	5 cut(s)	146, 654, 1077, 1151, 1910
FspI	TGCGCA	1 cut(s)	723
GlaI	GCGC	4 cut(s)	537, 723, 1129, 2086
GluI	GCNGC	7 cut(s)	292, 322, 534, 550, 1376, 1668, 2106
GsaI	CCCAGC	1 cut(s)	1386
GsuI	CTGGAG	2 cut(s)	100, 1324
HaeII	RGCGCY	1 cut(s)	539
HaeIII	GGCC	6 cut(s)	549, 732, 1443, 1548, 1806, 2034
HapII	CCGG	2 cut(s)	553, 788
HhaI	GCGC	4 cut(s)	538, 724, 1130, 2087
Hin6I	GCGC	4 cut(s)	536, 722, 1128, 2085
HinP1I	GCGC	4 cut(s)	536, 722, 1128, 2085
HincII	GTYRAC	2 cut(s)	1210, 2134
HindII	GTYRAC	2 cut(s)	1210, 2134
HindIII	AAGCTT	1 cut(s)	2126
HpaI	GTTAAC	1 cut(s)	1210
HpaII	CCGG	2 cut(s)	553, 788
HphI	GGTGA	5 cut(s)	34, 100, 175, 295, 689
Hpy166II	GTNNAC	5 cut(s)	699, 825, 1210, 1363, 2134
Hpy188I	TCNGA	7 cut(s)	45, 86, 163, 196, 592, 752, 1107
Hpy188III	TCNNGA	5 cut(s)	485, 1077, 1145, 1303, 1910
Hpy8I	GTNNAC	5 cut(s)	699, 825, 1210, 1363, 2134
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	121, 1918
HpyCH4III	ACNGT	4 cut(s)	264, 611, 1034, 1722
HpyCH4IV	ACGT	1 cut(s)	1540
HpyF10VI	GCNNNNNNNGC	5 cut(s)	626, 929, 1046, 1121, 1714
HpySE526I	ACGT	1 cut(s)	1540
HspAI	GCGC	4 cut(s)	536, 722, 1128, 2085
KpnI	GGTACC	1 cut(s)	1394
Ksp22I	TGATCA	1 cut(s)	45
KspAI	GTTAAC	1 cut(s)	1210
LguI	GCTCTTC	1 cut(s)	1890
LmnI	GCTCC	3 cut(s)	1462, 1613, 2053
Lsp1109I	GCAGC	4 cut(s)	308, 1387, 1654, 2117
LweI	GCATC	4 cut(s)	430, 453, 1572, 2146
MabI	ACCWGGT	1 cut(s)	1594
MaeI	CTAG	5 cut(s)	146, 654, 1077, 1151, 1910
MaeII	ACGT	1 cut(s)	1540
MaeIII	GTNAC	4 cut(s)	119, 1402, 1648, 1866
MboII	GAAGA	4 cut(s)	62, 1523, 1907, 1991
MfeI	CAATTG	2 cut(s)	1587, 2022
MflI	RGATCY	3 cut(s)	1635, 1690, 2054
MhlI	GDGCHC	2 cut(s)	513, 1618
MlsI	TGGCCA	1 cut(s)	732
MluNI	TGGCCA	1 cut(s)	732
MlyI	GAGTC	8 cut(s)	34, 63, 143, 206, 490, 596, 1410, 1915
MmeI	TCCRAC	3 cut(s)	186, 570, 1533
Mox20I	TGGCCA	1 cut(s)	732
MroXI	GAANNNNTTC	2 cut(s)	386, 1093
MscI	TGGCCA	1 cut(s)	732
MseI	TTAA	4 cut(s)	299, 876, 1209, 1800
MslI	CAYNNNNRTG	2 cut(s)	923, 1644
Msp20I	TGGCCA	1 cut(s)	732
MspA1I	CMGCKG	1 cut(s)	291
MspI	CCGG	2 cut(s)	553, 788
MspR9I	CCNGG	7 cut(s)	356, 554, 566, 1133, 1500, 1596, 2052
MunI	CAATTG	2 cut(s)	1587, 2022
Mva1269I	GAATGC	2 cut(s)	403, 1009
MvaI	CCWGG	6 cut(s)	356, 566, 1133, 1500, 1596, 2052
MvnI	CGCG	2 cut(s)	2085, 2087
MwoI	GCNNNNNNNGC	5 cut(s)	626, 929, 1046, 1121, 1714
NciI	CCSGG	1 cut(s)	554
NdeI	CATATG	1 cut(s)	1696
NlaIV	GGNNCC	1 cut(s)	1392
NmuCI	GTSAC	3 cut(s)	119, 1648, 1866
NsbI	TGCGCA	1 cut(s)	723
NspI	RCATGY	3 cut(s)	1128, 1431, 1769
NspV	TTCGAA	1 cut(s)	419
PaeI	GCATGC	2 cut(s)	1128, 1431
PaqCI	CACCTGC	1 cut(s)	934
PceI	AGGCCT	1 cut(s)	1443
PciI	ACATGT	1 cut(s)	1765
PciSI	GCTCTTC	1 cut(s)	1890
PcsI	WCGNNNNNNNCGW	2 cut(s)	692, 701
PctI	GAATGC	2 cut(s)	403, 1009
PdmI	GAANNNNTTC	2 cut(s)	386, 1093
PfeI	GAWTC	4 cut(s)	191, 247, 1094, 1952
PflFI	GACNNNGTC	1 cut(s)	905
PflMI	CCANNNNNTGG	1 cut(s)	739
PfoI	TCCNGGA	1 cut(s)	2050
PkrI	GCNGC	7 cut(s)	293, 323, 535, 551, 1377, 1669, 2107
PleI	GAGTC	8 cut(s)	34, 62, 143, 205, 489, 595, 1410, 1914
PpsI	GAGTC	8 cut(s)	34, 62, 143, 205, 489, 595, 1410, 1914
PscI	ACATGT	1 cut(s)	1765
PsiI	TTATAA	1 cut(s)	1574
Psp6I	CCWGG	6 cut(s)	354, 564, 1131, 1498, 1594, 2050
PspFI	CCCAGC	1 cut(s)	1382
PspGI	CCWGG	6 cut(s)	354, 564, 1131, 1498, 1594, 2050
PspN4I	GGNNCC	1 cut(s)	1392
PspPI	GGNCC	2 cut(s)	547, 1804
PstI	CTGCAG	1 cut(s)	1672
PsuI	RGATCY	3 cut(s)	1635, 1690, 2054
PsyI	GACNNNGTC	1 cut(s)	905
RsaI	GTAC	7 cut(s)	273, 338, 1392, 1449, 1600, 1776, 2044
RsaNI	GTAC	7 cut(s)	272, 337, 1391, 1448, 1599, 1775, 2043
RseI	CAYNNNNRTG	2 cut(s)	923, 1644
SapI	GCTCTTC	1 cut(s)	1890
SaqAI	TTAA	4 cut(s)	299, 876, 1209, 1800
SatI	GCNGC	7 cut(s)	292, 322, 534, 550, 1376, 1668, 2106
Sau96I	GGNCC	2 cut(s)	547, 1804
ScaI	AGTACT	1 cut(s)	1776
SchI	GAGTC	8 cut(s)	34, 63, 143, 206, 490, 596, 1410, 1915
ScrFI	CCNGG	7 cut(s)	356, 554, 566, 1133, 1500, 1596, 2052
SduI	GDGCHC	2 cut(s)	513, 1618
SexAI	ACCWGGT	1 cut(s)	1594
SfaNI	GCATC	4 cut(s)	430, 453, 1572, 2146
SfcI	CTRYAG	2 cut(s)	1050, 1668
SfuI	TTCGAA	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	923, 1644
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SphI	GCATGC	2 cut(s)	1128, 1431
SseBI	AGGCCT	1 cut(s)	1443
SsiI	CCGC	6 cut(s)	75, 291, 352, 533, 550, 1474
SspMI	CTAG	5 cut(s)	146, 654, 1077, 1151, 1910
StuI	AGGCCT	1 cut(s)	1443
StyD4I	CCNGG	7 cut(s)	354, 552, 564, 1131, 1498, 1594, 2050
StyI	CCWWGG	2 cut(s)	1807, 1874
TaaI	ACNGT	4 cut(s)	264, 611, 1034, 1722
TaiI	ACGT	1 cut(s)	1543
TaqI	TCGA	6 cut(s)	219, 363, 419, 574, 704, 1339
TatI	WGTACW	4 cut(s)	271, 1447, 1774, 2042
TauI	GCSGC	3 cut(s)	294, 536, 552
TfiI	GAWTC	4 cut(s)	191, 247, 1094, 1952
Tru1I	TTAA	4 cut(s)	299, 876, 1209, 1800
Tru9I	TTAA	4 cut(s)	299, 876, 1209, 1800
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	3 cut(s)	119, 1648, 1866
TseI	GCWGC	4 cut(s)	321, 1375, 1667, 2105
Tsp45I	GTSAC	3 cut(s)	119, 1648, 1866
TspDTI	ATGAA	9 cut(s)	17, 93, 333, 381, 548, 851, 1841, 1908, 1992
TspGWI	ACGGA	3 cut(s)	7, 1052, 1945
TspRI	CASTG	1 cut(s)	529
Tth111I	GACNNNGTC	1 cut(s)	905
Van91I	CCANNNNNTGG	1 cut(s)	739
XapI	RAATTY	5 cut(s)	5, 80, 368, 753, 890
XbaI	TCTAGA	2 cut(s)	1076, 1909
XceI	RCATGY	3 cut(s)	1128, 1431, 1769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2180
XmiI	GTMKAC	1 cut(s)	824
XmnI	GAANNNNTTC	2 cut(s)	386, 1093
XspI	CTAG	5 cut(s)	146, 654, 1077, 1151, 1910
ZrmI	AGTACT	1 cut(s)	1776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.