Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017162

Physical Location & Seq

Genomic Coordinates Forward (+)

6906386 .. 6908674

Gene Structure 2289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG088500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2289 bp

ATGTGCTTCTTGTGCAGCATGTTTGCATGTATTGGGGCTCACCTCCTTAAGAGAACGTTGCTGATATCATATGTGAAATTTAGCTACTCCGTGGTGATGGGTGTGAGTTTGACTCTGATCAAGAGAGTCTCTCTGCTTCCTCTTCCCGCCAAATTCCGAACTCTGTCTCAGTTTTCGTTCACCTTCTCCAATCACTATTGCTTCTCTCCTCTCAACCTGGACTCATACTTCTCCGACGACCATACCCTCCTCCATTTCACCTACGATTCCGAGTCATTCTTTGCCTCTCTCATCGATAATTCCACCCACAAGAGCCACTTGAATCAAATCCAAGCGCAGTTGCTTGTACTGGGTTTCCAAGCCAGCGGCTTTTTAATCACCAAATTAGTAAACTGCAGCTCAAACCTCGGGTACATTTCATACGCCCGCCAGGTGTTCGATGAATTCACTGACCCGAATGTGTTCCTGTGGAATGCAATCGTTCGGGGCTATTCCAAGCACAATGCGTTTGCTGATGCCGTAGAAATGTATTGTAGGATGCAAGAGACCGGCGTGAGTCCAGATGGCTTTACTTTCCCTCATGTCCTCAAAGCTTGCGGCGGCTTGGCCGCGCTTGAAATGGGCCGCCGGGTTCATTGCCAGGTGTTTCGACATGGGTTTGAGTCGGATGTGTTTGTGCAGAACAGTCTCGTGGCGTTTTATGCCAAATGTGGTAGAGTAGAACGCGCTAGGATTGTGTTTGATGGGTTGGGTGAGAGGTCGGTTGTTTCGTGGACTTCGATCATTTCAGGGTATGCGCAGAATGGCCAGTGTTTGGAAGCTCTGAGAGTTTTTAGTGTGATGAGAAAGTTGAATGTTAGACCGGATTGGATTGTTTTGGTTAGTGTTCTCAAAGCGTATACTGATGTAGAGGACTTGGGACAGGGGACGTCTGTTCATGGTTGTTTAGTTAAAATGGGACTTGACTTTGAACCTGACTTGGTCATTTCACTCACAGCCATGTATGCTAAAAGTGGGCAGGTGATGGTTGCCAGATCATTTTTTGATAAGATGGAAAGACCAAATGTAATGATGTGGAATGCTATGATTTCCGGCTATGCAAAGAACGGTCATGCTGAGAAAGCTGTAGAGCTATTGCGTGAGATGATCTCTAGAAGCATTGGAATTGATTCAATTACTCTGAGGTCTGCTATCTCAGCATGCGCCCAGGTGGGTTCTCTTGAACTAGCGATATGGATGGATGATTATATCAGCACAAATGAGTATAGAAATCATGTTTTTGTTAACACAGCCCTAATTGATATGTATGCAAAATGTGGTAGTGTAGATTTTGCTCGCATGGTCTTTGATAGAACACCTAATAAAGATGTTGTCGTCTGGAGTGCAATGATTGTGGGCTATGGATTGCATGGTCGAGGACAAGAAGCCATTGATGTTTACTATTCTATGCAGCAGGCTGGGGTGGTACCAAATGATGTTACCTTTCTTGGACTCCTTATTGCATGCAACCATTCAGGCCTTGTACATGAGGGATGGGAGCTTTTCCACCGCATGAGAGACTATGGGATTGAGCCTGGAAACCATCATTATTCGTGTGTGGTTGATCTTCTGGGACGTGCAGGCCAGTTGGAACAGGCTTATGATTTTATAAAAAAGATGCCAATTGAACCTGGTACAAGTGTCTGGGGAGCACTTCTTAGTTCATGCAAGATCCATCGCAATGTGACTTTGGGAGAATATGCTGCAGAAAAGCTTTTCTCATTAGATCCATATGAGATAGGGCATTATGTGCAACTGTCAAATCTCTATGCTTCAGCCCAATTATGGGATCGTGTTGCACATGTGCGAGTACTGATGAGGGAGAAAGGACTGATTAAGGGCCTTGGACATAGTTTGATTGAGATCAATGGAAAACTTCAGGCATTTCATGTAGGAGACAAGTCACATCCAAGGTCTAAGGAAATATATGAAGAGCTTGAGAGTCTAGAGAGGAGGTTGAGGGAGGCTGGATTTGTTCCACATACAGAATCCGTCCTGCATGATTTGAATTATGAAGAGACAGAGGAGACACTTTGCAATCATAGTGAGAGGCTGGCAATTGCTTATGGCCTCATCTGTACTGCTCCTGGAACTACACTAAGAATAACTAAAAACCTACGCGCGTGTGTGAATTGTCATGCAGCAACTAAGCTAATATCTAAGCTTGTCAACAGGGAGATAGTTGTCAGGGATGCAAAGCGTTTCCACCATTTCAAGGATGGATTTTGTTCCTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase HLH PPR PPR_2

Protein Analysis

762

Amino Acids

85.76

Weight (kDa)

6.88

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	152 - 199	4.4e-10	PPR repeat family
PPR_2	PF13041	254 - 299	2.9e-08	PPR repeat family
PPR	PF01535	256 - 286	3.1e-07	PPR repeat
PPR_2	PF13041	354 - 402	2.2e-11	PPR repeat family
PPR_1	PF12854	354 - 382	1e-07	PPR repeat
PPR	PF01535	358 - 386	2.9e-09	PPR repeat
PPR_2	PF13041	455 - 502	4e-08	PPR repeat family
E_motif	PF20431	572 - 634	4.4e-11	E motif
Eplus_motif	PF20430	642 - 666	1.9e-09	E+ motif
DYW_deaminase	PF14432	670 - 762	6.2e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12770
fragaria_vesca	FvH4_6g08230
malus_domestica	MD09G1101900.v1.1
prunus_persica	Prupe.3G223800_v2.0.a1
pyrus_communis	pycom09g02560
rosa_chinensis	RchiOBHm_Chr3g0458151
rosa_multiflora	Rmu_co8353983.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421260
rosa_rugosa	Rorug03G0025100
rosa_samantha	Rh3AG085800 Rh3BG088500 Rh3DG089500
rosa_wichuraiana	Rw3G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1649
AarI	CACCTGC	1 cut(s)	1009
AatII	GACGTC	1 cut(s)	932
Acc16I	TGCGCA	1 cut(s)	798
Acc36I	ACCTGC	1 cut(s)	1009
Acc65I	GGTACC	1 cut(s)	1465
AccB1I	GGYRCC	1 cut(s)	1465
AccB7I	CCANNNNNTGG	1 cut(s)	814
AccI	GTMKAC	1 cut(s)	899
AccII	CGCG	4 cut(s)	611, 726, 2160, 2162
AciI	CCGC	8 cut(s)	147, 366, 427, 597, 600, 609, 625, 1549
AclI	AACGTT	1 cut(s)	56
AclWI	GGATC	3 cut(s)	1705, 1760, 1836
AcoI	YGGCCR	2 cut(s)	606, 805
AcsI	RAATTY	3 cut(s)	77, 152, 443
AcuI	CTGAAG	2 cut(s)	1797, 1901
AcyI	GRCGYC	1 cut(s)	929
AfaI	GTAC	7 cut(s)	348, 413, 1467, 1524, 1675, 1851, 2119
AfiI	CCNNNNNNNGG	4 cut(s)	814, 1824, 1825, 2254
AflII	CTTAAG	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	1840
AgsI	TTSAA	9 cut(s)	322, 617, 853, 971, 1173, 1223, 1667, 2047, 2254
AjiI	CACGTC	1 cut(s)	1616
AjnI	CCWGG	7 cut(s)	216, 429, 639, 1206, 1573, 1669, 2125
Alw21I	GWGCWC	1 cut(s)	1693
Alw26I	GTCTC	8 cut(s)	133, 171, 539, 692, 1551, 1929, 2051, 2060
AlwI	GGATC	3 cut(s)	1705, 1760, 1836
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	7 cut(s)	606, 622, 805, 1516, 1621, 1879, 2107
ApeKI	GCWGC	5 cut(s)	15, 396, 1450, 1742, 2180
ApoI	RAATTY	3 cut(s)	77, 152, 443
Asp700I	GAANNNNTTC	2 cut(s)	461, 1168
Asp718I	GGTACC	1 cut(s)	1465
AspLEI	GCGC	6 cut(s)	337, 613, 728, 799, 1205, 2162
AspS9I	GGNCC	2 cut(s)	622, 1879
AsuC2I	CCSGG	1 cut(s)	629
AsuHPI	GGTGA	7 cut(s)	32, 106, 172, 250, 370, 764, 1033
AvaI	CYCGRG	1 cut(s)	407
BaeI	ACNNNNGTAYC	2 cut(s)	1665, 1698
BalI	TGGCCA	1 cut(s)	807
BanI	GGYRCC	1 cut(s)	1465
BanII	GRGCYC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	1693
BbvI	GCAGC	5 cut(s)	27, 408, 1462, 1729, 2192
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	7 cut(s)	218, 431, 641, 1208, 1575, 1671, 2127
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	629
BcoDI	GTCTC	8 cut(s)	133, 171, 539, 692, 1551, 1929, 2051, 2060
BfaI	CTAG	4 cut(s)	729, 1152, 1226, 1985
BfmI	CTRYAG	3 cut(s)	394, 1125, 1743
BfrI	CTTAAG	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	1009
BmcAI	AGTACT	1 cut(s)	1851
Bme1390I	CCNGG	8 cut(s)	218, 431, 629, 641, 1208, 1575, 1671, 2127
BmeT110I	CYCGRG	1 cut(s)	407
BmgBI	CACGTC	1 cut(s)	1616
BmgT120I	GGNCC	2 cut(s)	622, 1879
BmiI	GGNNCC	1 cut(s)	1467
BmrFI	CCNGG	8 cut(s)	218, 431, 629, 641, 1208, 1575, 1671, 2127
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	4 cut(s)	505, 528, 1647, 2221
BmuI	ACTGGG	1 cut(s)	359
BplI	GAGNNNNNCTC	6 cut(s)	97, 129, 115, 147, 1133, 1165
BpmI	CTGGAG	1 cut(s)	1399
BpuEI	CTTGAG	1 cut(s)	1997
BpuMI	CCSGG	1 cut(s)	629
Bsa29I	ATCGAT	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	1901
BsaHI	GRCGYC	1 cut(s)	929
BsaI	GGTCTC	1 cut(s)	539
BsaJI	CCNNGG	5 cut(s)	90, 406, 1206, 1882, 1949
BsaWI	WCCGGW	1 cut(s)	862
Bsc4I	CCNNNNNNNGG	4 cut(s)	814, 1824, 1825, 2254
Bse118I	RCCGGY	1 cut(s)	548
Bse1I	ACTGG	3 cut(s)	354, 808, 1624
Bse3DI	GCAATG	3 cut(s)	634, 1392, 1726
Bse8I	GATNNNNATC	1 cut(s)	1901
BseBI	CCWGG	7 cut(s)	218, 431, 641, 1208, 1575, 1671, 2127
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	5 cut(s)	90, 406, 1206, 1882, 1949
BseGI	GGATG	8 cut(s)	543, 673, 1242, 1246, 1538, 1945, 2236, 2263
BseJI	GATNNNNATC	1 cut(s)	1901
BseLI	CCNNNNNNNGG	4 cut(s)	814, 1824, 1825, 2254
BseMI	GCAATG	3 cut(s)	634, 1392, 1726
BseMII	CTCAG	5 cut(s)	182, 815, 1107, 1172, 1209
BseNI	ACTGG	3 cut(s)	354, 808, 1624
BseRI	GAGGAG	4 cut(s)	198, 239, 2005, 2078
BseXI	GCAGC	5 cut(s)	27, 408, 1462, 1729, 2192
BseYI	CCCAGC	1 cut(s)	1457
BsgI	GTGCAG	3 cut(s)	34, 698, 1638
Bsh1236I	CGCG	4 cut(s)	611, 726, 2160, 2162
BshFI	GGCC	7 cut(s)	608, 624, 807, 1518, 1623, 1881, 2109
BshNI	GGYRCC	1 cut(s)	1465
BshVI	ATCGAT	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	1693
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	4 cut(s)	549, 628, 863, 1092
BslFI	GGGAC	4 cut(s)	933, 940, 972, 1626
BslI	CCNNNNNNNGG	4 cut(s)	814, 1824, 1825, 2254
BsmAI	GTCTC	8 cut(s)	133, 171, 539, 692, 1551, 1929, 2051, 2060
BsmFI	GGGAC	4 cut(s)	933, 940, 972, 1626
BsmI	GAATGC	2 cut(s)	478, 1084
BsnI	GGCC	7 cut(s)	608, 624, 807, 1518, 1623, 1881, 2109
Bso31I	GGTCTC	1 cut(s)	539
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	40, 1693
Bsp1407I	TGTACA	1 cut(s)	1522
Bsp143I	GATC	9 cut(s)	117, 780, 1034, 1146, 1603, 1710, 1765, 1828, 1902
BspACI	CCGC	8 cut(s)	147, 366, 427, 597, 600, 609, 625, 1549
BspANI	GGCC	7 cut(s)	608, 624, 807, 1518, 1623, 1881, 2109
BspCNI	CTCAG	5 cut(s)	181, 816, 1108, 1173, 1208
BspDI	ATCGAT	1 cut(s)	294
BspFNI	CGCG	4 cut(s)	611, 726, 2160, 2162
BspLI	GGNNCC	1 cut(s)	1467
BspMAI	CTGCAG	2 cut(s)	398, 1747
BspMI	ACCTGC	1 cut(s)	1009
BspPI	GGATC	3 cut(s)	1705, 1760, 1836
BspQI	GCTCTTC	1 cut(s)	1965
BspT107I	GGYRCC	1 cut(s)	1465
BspTI	CTTAAG	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	539
BsrDI	GCAATG	3 cut(s)	634, 1392, 1726
BsrFI	RCCGGY	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	1522
BsrI	ACTGG	3 cut(s)	354, 808, 1624
BssAI	RCCGGY	1 cut(s)	548
BssECI	CCNNGG	5 cut(s)	90, 406, 1206, 1882, 1949
BssMI	GATC	9 cut(s)	117, 780, 1034, 1146, 1603, 1710, 1765, 1828, 1902
BssNAI	GTATAC	1 cut(s)	900
BssNI	GRCGYC	1 cut(s)	929
BssSI	CACGAG	1 cut(s)	689
BssT1I	CCWWGG	2 cut(s)	1882, 1949
Bst1107I	GTATAC	1 cut(s)	900
Bst2BI	CACGAG	1 cut(s)	689
Bst2UI	CCWGG	7 cut(s)	218, 431, 641, 1208, 1575, 1671, 2127
Bst4CI	ACNGT	3 cut(s)	686, 1109, 1797
Bst6I	CTCTTC	3 cut(s)	147, 1965, 2049
BstACI	GRCGYC	1 cut(s)	929
BstAFI	CTTAAG	1 cut(s)	47
BstAPI	GCANNNNNTGC	1 cut(s)	1789
BstAUI	TGTACA	1 cut(s)	1522
BstC8I	GCNNGC	9 cut(s)	364, 427, 595, 1201, 1336, 1455, 1504, 1621, 2094
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	8 cut(s)	543, 673, 1242, 1246, 1538, 1945, 2236, 2263
BstFNI	CGCG	4 cut(s)	611, 726, 2160, 2162
BstHHI	GCGC	6 cut(s)	337, 613, 728, 799, 1205, 2162
BstKTI	GATC	9 cut(s)	120, 783, 1037, 1149, 1606, 1713, 1768, 1831, 1905
BstMAI	GTCTC	8 cut(s)	133, 171, 539, 692, 1551, 1929, 2051, 2060
BstMBI	GATC	9 cut(s)	117, 780, 1034, 1146, 1603, 1710, 1765, 1828, 1902
BstMWI	GCNNNNNNNGC	6 cut(s)	12, 701, 1004, 1121, 1196, 1789
BstNI	CCWGG	7 cut(s)	218, 431, 641, 1208, 1575, 1671, 2127
BstNSI	RCATGY	5 cut(s)	22, 30, 1203, 1506, 1844
BstSCI	CCNGG	8 cut(s)	216, 429, 627, 639, 1206, 1573, 1669, 2125
BstSFI	CTRYAG	3 cut(s)	394, 1125, 1743
BstUI	CGCG	4 cut(s)	611, 726, 2160, 2162
BstV1I	GCAGC	5 cut(s)	27, 408, 1462, 1729, 2192
BstX2I	RGATCY	2 cut(s)	1710, 1765
BstYI	RGATCY	2 cut(s)	1710, 1765
BstZ17I	GTATAC	1 cut(s)	900
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	7 cut(s)	608, 624, 807, 1518, 1623, 1881, 2109
BsuTUI	ATCGAT	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	1700
BtrI	CACGTC	1 cut(s)	1616
BtsCI	GGATG	8 cut(s)	543, 673, 1242, 1246, 1538, 1945, 2236, 2263
BtsIMutI	CAGTG	2 cut(s)	447, 815
BveI	ACCTGC	1 cut(s)	1009
Cac8I	GCNNGC	9 cut(s)	364, 427, 595, 1201, 1336, 1455, 1504, 1621, 2094
CfoI	GCGC	6 cut(s)	337, 613, 728, 799, 1205, 2162
Cfr10I	RCCGGY	1 cut(s)	548
Cfr13I	GGNCC	2 cut(s)	622, 1879
ClaI	ATCGAT	1 cut(s)	294
CsiI	ACCWGGT	1 cut(s)	1669
Csp6I	GTAC	7 cut(s)	347, 412, 1466, 1523, 1674, 1850, 2118
CspCI	CAANNNNNGTGG	2 cut(s)	1374, 1409
CviQI	GTAC	7 cut(s)	347, 412, 1466, 1523, 1674, 1850, 2118
DpnI	GATC	9 cut(s)	119, 782, 1036, 1148, 1605, 1712, 1767, 1830, 1904
DpnII	GATC	9 cut(s)	117, 780, 1034, 1146, 1603, 1710, 1765, 1828, 1902
EaeI	YGGCCR	2 cut(s)	606, 805
Eam1104I	CTCTTC	3 cut(s)	147, 1965, 2049
EarI	CTCTTC	3 cut(s)	147, 1965, 2049
Eco130I	CCWWGG	2 cut(s)	1882, 1949
Eco147I	AGGCCT	1 cut(s)	1518
Eco24I	GRGCYC	1 cut(s)	40
Eco31I	GGTCTC	1 cut(s)	539
Eco32I	GATATC	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	1797, 1901
Eco88I	CYCGRG	1 cut(s)	407
EcoO109I	RGGNCCY	1 cut(s)	1879
EcoRI	GAATTC	1 cut(s)	443
EcoRII	CCWGG	7 cut(s)	216, 429, 639, 1206, 1573, 1669, 2125
EcoRV	GATATC	1 cut(s)	66
EcoT14I	CCWWGG	2 cut(s)	1882, 1949
EcoT38I	GRGCYC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	1882, 1949
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FaqI	GGGAC	4 cut(s)	933, 940, 972, 1626
FauI	CCCGC	2 cut(s)	154, 434
FauNDI	CATATG	2 cut(s)	70, 1771
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	899
FokI	GGATG	8 cut(s)	550, 680, 1249, 1253, 1545, 1932, 2243, 2270
FriOI	GRGCYC	1 cut(s)	40
FspBI	CTAG	4 cut(s)	729, 1152, 1226, 1985
FspI	TGCGCA	1 cut(s)	798
GlaI	GCGC	6 cut(s)	336, 612, 727, 798, 1204, 2161
GsaI	CCCAGC	1 cut(s)	1461
GsuI	CTGGAG	1 cut(s)	1399
HaeIII	GGCC	7 cut(s)	608, 624, 807, 1518, 1623, 1881, 2109
HapII	CCGG	4 cut(s)	549, 628, 863, 1092
HhaI	GCGC	6 cut(s)	337, 613, 728, 799, 1205, 2162
Hin1I	GRCGYC	1 cut(s)	929
Hin6I	GCGC	6 cut(s)	335, 611, 726, 797, 1203, 2160
HinP1I	GCGC	6 cut(s)	335, 611, 726, 797, 1203, 2160
HincII	GTYRAC	2 cut(s)	1285, 2209
HindII	GTYRAC	2 cut(s)	1285, 2209
HindIII	AAGCTT	3 cut(s)	591, 1751, 2201
HpaI	GTTAAC	1 cut(s)	1285
HpaII	CCGG	4 cut(s)	549, 628, 863, 1092
HphI	GGTGA	7 cut(s)	32, 106, 172, 250, 370, 764, 1033
Hpy166II	GTNNAC	7 cut(s)	180, 391, 774, 900, 1285, 1438, 2209
Hpy188I	TCNGA	7 cut(s)	117, 158, 235, 271, 667, 825, 1182
Hpy188III	TCNNGA	6 cut(s)	121, 560, 1152, 1220, 1378, 1985
Hpy8I	GTNNAC	7 cut(s)	180, 391, 774, 900, 1285, 1438, 2209
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	686, 1109, 1797
HpyCH4IV	ACGT	3 cut(s)	56, 929, 1615
HpyF10VI	GCNNNNNNNGC	6 cut(s)	12, 701, 1004, 1121, 1196, 1789
HpySE526I	ACGT	3 cut(s)	56, 929, 1615
Hsp92I	GRCGYC	1 cut(s)	929
HspAI	GCGC	6 cut(s)	335, 611, 726, 797, 1203, 2160
KpnI	GGTACC	1 cut(s)	1469
Ksp22I	TGATCA	1 cut(s)	117
KspAI	GTTAAC	1 cut(s)	1285
Kzo9I	GATC	9 cut(s)	117, 780, 1034, 1146, 1603, 1710, 1765, 1828, 1902
LguI	GCTCTTC	1 cut(s)	1965
LmnI	GCTCC	3 cut(s)	1537, 1688, 2128
Lsp1109I	GCAGC	5 cut(s)	27, 408, 1462, 1729, 2192
LweI	GCATC	4 cut(s)	505, 528, 1647, 2221
MabI	ACCWGGT	1 cut(s)	1669
MaeI	CTAG	4 cut(s)	729, 1152, 1226, 1985
MaeII	ACGT	3 cut(s)	56, 929, 1615
MaeIII	GTNAC	3 cut(s)	1477, 1723, 1941
MalI	GATC	9 cut(s)	119, 782, 1036, 1148, 1605, 1712, 1767, 1830, 1904
MboI	GATC	9 cut(s)	117, 780, 1034, 1146, 1603, 1710, 1765, 1828, 1902
MboII	GAAGA	4 cut(s)	134, 1598, 1982, 2066
MfeI	CAATTG	2 cut(s)	1662, 2097
MflI	RGATCY	2 cut(s)	1710, 1765
MhlI	GDGCHC	2 cut(s)	40, 1693
MlsI	TGGCCA	1 cut(s)	807
MluNI	TGGCCA	1 cut(s)	807
MlyI	GAGTC	8 cut(s)	106, 135, 215, 281, 565, 671, 1485, 1990
MmeI	TCCRAC	3 cut(s)	258, 645, 1608
Mox20I	TGGCCA	1 cut(s)	807
MroXI	GAANNNNTTC	2 cut(s)	461, 1168
MscI	TGGCCA	1 cut(s)	807
MseI	TTAA	5 cut(s)	48, 374, 951, 1284, 1875
MslI	CAYNNNNRTG	2 cut(s)	998, 1719
Msp20I	TGGCCA	1 cut(s)	807
MspA1I	CMGCKG	1 cut(s)	366
MspCI	CTTAAG	1 cut(s)	47
MspI	CCGG	4 cut(s)	549, 628, 863, 1092
MspR9I	CCNGG	8 cut(s)	218, 431, 629, 641, 1208, 1575, 1671, 2127
MunI	CAATTG	2 cut(s)	1662, 2097
Mva1269I	GAATGC	2 cut(s)	478, 1084
MvaI	CCWGG	7 cut(s)	218, 431, 641, 1208, 1575, 1671, 2127
MvnI	CGCG	4 cut(s)	611, 726, 2160, 2162
MwoI	GCNNNNNNNGC	6 cut(s)	12, 701, 1004, 1121, 1196, 1789
NciI	CCSGG	1 cut(s)	629
NdeI	CATATG	2 cut(s)	70, 1771
NdeII	GATC	9 cut(s)	117, 780, 1034, 1146, 1603, 1710, 1765, 1828, 1902
NlaIV	GGNNCC	1 cut(s)	1467
NmuCI	GTSAC	2 cut(s)	1723, 1941
NsbI	TGCGCA	1 cut(s)	798
NspI	RCATGY	5 cut(s)	22, 30, 1203, 1506, 1844
PaeI	GCATGC	2 cut(s)	1203, 1506
PaqCI	CACCTGC	1 cut(s)	1009
PceI	AGGCCT	1 cut(s)	1518
PciI	ACATGT	1 cut(s)	1840
PciSI	GCTCTTC	1 cut(s)	1965
PcsI	WCGNNNNNNNCGW	2 cut(s)	767, 776
PctI	GAATGC	2 cut(s)	478, 1084
PdmI	GAANNNNTTC	2 cut(s)	461, 1168
PfeI	GAWTC	4 cut(s)	266, 322, 1169, 2027
PflFI	GACNNNGTC	1 cut(s)	980
PflMI	CCANNNNNTGG	1 cut(s)	814
PfoI	TCCNGGA	1 cut(s)	2125
PleI	GAGTC	8 cut(s)	106, 134, 215, 280, 564, 670, 1485, 1989
PpsI	GAGTC	8 cut(s)	106, 134, 215, 280, 564, 670, 1485, 1989
PscI	ACATGT	1 cut(s)	1840
PsiI	TTATAA	1 cut(s)	1649
Psp1406I	AACGTT	1 cut(s)	56
Psp6I	CCWGG	7 cut(s)	216, 429, 639, 1206, 1573, 1669, 2125
PspFI	CCCAGC	1 cut(s)	1457
PspGI	CCWGG	7 cut(s)	216, 429, 639, 1206, 1573, 1669, 2125
PspN4I	GGNNCC	1 cut(s)	1467
PspPI	GGNCC	2 cut(s)	622, 1879
PstI	CTGCAG	2 cut(s)	398, 1747
PsuI	RGATCY	2 cut(s)	1710, 1765
PsyI	GACNNNGTC	1 cut(s)	980
RsaI	GTAC	7 cut(s)	348, 413, 1467, 1524, 1675, 1851, 2119
RsaNI	GTAC	7 cut(s)	347, 412, 1466, 1523, 1674, 1850, 2118
RseI	CAYNNNNRTG	2 cut(s)	998, 1719
SapI	GCTCTTC	1 cut(s)	1965
SaqAI	TTAA	5 cut(s)	48, 374, 951, 1284, 1875
Sau3AI	GATC	9 cut(s)	117, 780, 1034, 1146, 1603, 1710, 1765, 1828, 1902
Sau96I	GGNCC	2 cut(s)	622, 1879
ScaI	AGTACT	1 cut(s)	1851
SchI	GAGTC	8 cut(s)	106, 135, 215, 281, 565, 671, 1485, 1990
ScrFI	CCNGG	8 cut(s)	218, 431, 629, 641, 1208, 1575, 1671, 2127
SduI	GDGCHC	2 cut(s)	40, 1693
SexAI	ACCWGGT	1 cut(s)	1669
SfaNI	GCATC	4 cut(s)	505, 528, 1647, 2221
SfcI	CTRYAG	3 cut(s)	394, 1125, 1743
SmiMI	CAYNNNNRTG	2 cut(s)	998, 1719
SmlI	CTYRAG	2 cut(s)	47, 1976
SmoI	CTYRAG	2 cut(s)	47, 1976
SphI	GCATGC	2 cut(s)	1203, 1506
SseBI	AGGCCT	1 cut(s)	1518
SsiI	CCGC	8 cut(s)	147, 366, 427, 597, 600, 609, 625, 1549
SspMI	CTAG	4 cut(s)	729, 1152, 1226, 1985
StuI	AGGCCT	1 cut(s)	1518
StyD4I	CCNGG	8 cut(s)	216, 429, 627, 639, 1206, 1573, 1669, 2125
StyI	CCWWGG	2 cut(s)	1882, 1949
TaaI	ACNGT	3 cut(s)	686, 1109, 1797
TaiI	ACGT	3 cut(s)	59, 932, 1618
TaqI	TCGA	5 cut(s)	294, 438, 649, 779, 1414
TatI	WGTACW	4 cut(s)	346, 1522, 1849, 2117
TauI	GCSGC	5 cut(s)	369, 600, 603, 611, 627
TfiI	GAWTC	4 cut(s)	266, 322, 1169, 2027
Tru1I	TTAA	5 cut(s)	48, 374, 951, 1284, 1875
Tru9I	TTAA	5 cut(s)	48, 374, 951, 1284, 1875
TscAI	CASTG	2 cut(s)	454, 815
TseFI	GTSAC	2 cut(s)	1723, 1941
TseI	GCWGC	5 cut(s)	15, 396, 1450, 1742, 2180
Tsp45I	GTSAC	2 cut(s)	1723, 1941
TspDTI	ATGAA	8 cut(s)	408, 456, 623, 926, 1692, 1916, 1983, 2067
TspGWI	ACGGA	2 cut(s)	79, 2020
TspRI	CASTG	2 cut(s)	454, 815
Tth111I	GACNNNGTC	1 cut(s)	980
Van91I	CCANNNNNTGG	1 cut(s)	814
Vha464I	CTTAAG	1 cut(s)	47
XapI	RAATTY	3 cut(s)	77, 152, 443
XbaI	TCTAGA	2 cut(s)	1151, 1984
XceI	RCATGY	5 cut(s)	22, 30, 1203, 1506, 1844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2255
XmiI	GTMKAC	1 cut(s)	899
XmnI	GAANNNNTTC	2 cut(s)	461, 1168
XspI	CTAG	4 cut(s)	729, 1152, 1226, 1985
ZraI	GACGTC	1 cut(s)	930
ZrmI	AGTACT	1 cut(s)	1851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.