Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017162

Physical Location & Seq

Genomic Coordinates Forward (+)

6939084 .. 6943419

Gene Structure 4336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42485

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGGGTGTGAGTTTGACTCTGATCAAGAGAGTCTCTCTGCTTCCTCTTCCCGCCAAATTCCGAACTCTGTCTCAGTTTTCATTCACCTTCTCCAATCACTATTGCTCCTCTCCTCTCAACCTAGACTCATACTTCTCCGACGACCATACCCTCTTCCATTTCACCTACGATTCCGAGTCATTCTTTGCCTCTCTCATCGATAATTCCACCCACAAGAGCCACTTGAATCAAATCCAAGCGCAGTTGCTTGTACTGGGTTTCCAAGCCAGCGGCTTTTTAATCACCAAATTGGTTAACTGCAGCTCAAACCTCGGGTGCATTTCATACGCCCGCCAGGTGTTCGATGAATTTACTGACCCGAATGTGTTCCTGTGGAATGCAATCGTTCGGGGCTATTCGAAGCACAATGCGTTTGCTGATGCGGTAGAAATGTATTGTAGGATGCAAGAGACCGGTGTGAGTCCAGATGGCTTTACTTTCCCTCATGTGCTCAAAGCTTGCGGTGGCTTGGCCGCGCTTGAAATGGGCCGCCGGGTTCATTGCCAGGTGTTTCGACATGGGTTTGAGTCGGATGTGTTTGTGCAGAACAGTCTCGTGGCGTTTTATGCCAAATGTGGTAGAGTAGAACGCGCTAGGATTGTGTTTGATGGGTTGGGTGAGAGGTCGGTTGTTTCGTGGACTTCGATCATTTCAGGGTATGCGCAGAATGGCCAGTGTTTGGAAGCTCTGAGAGTTTTTAGTGTGATGAGAAAGTTGAATGTTAGACCGGATTGGATTGTTTTGGTTAGTGTTCTCAAAGCGTATACTGATGTAGAGGACTTGGGACAGGGGAGGTCTGTTCATGGATGTTTAGTTAAAATGGGACTTGACTTTGAACCTGACTTGGTCATTTCACTCACAGCCATGTATGCTAAAAGTGGGCAGGTGATGGTTGCCAGATCATTTTTTGATAAGATGGAAAGACCAAATGTAATGATGTGGAATGCTATGATTTCCGGCTATGCAAAGAACGGTCATGCTGAGAAAGCTGTAGAGCTATTCCGTGAGATGATCTCTAGAAGCATTAGAATTGATTCAATTACTCTGAGGTCTGCTATCTCAGCATGCGCCCAGGTGGGTTCTCTTGAACTAGCGAAATGGATGGATGATTATATCAGCAAAAGTCAGTATAGAAATCATGTTTTTGTTAACACAGCCCTAATTGATATGTATGCAAAATGTGGTAGTGTATACTTTGCTCGCATGGTCTTTGATAGAACACCTAATAAAGATGTTGTCGTCTGGAGTGCAATGATTGTGGGCTATGGATTGCATGGTCGAGGACAAGAAGCCATTGATGTTTACTATTCTATGCAGCAGGCTGGGGTGGTACCAAATGATGTTACCTTTCTTGGACTCCTTACTGCATGCAACCATTCAGGCCTTGTACATGAGGGATGGGAGCTTTTCCACCGCATGAGAGACTATGGGATTGAGCCTGGAAACCATCATTATTCATGTGTGGTTGATCTTCTGGGACGTGCAGGCCAGTTGGAACAGGCTTATGATTTTATAAAAAAGATGCCAATTGAACCTGGTACAAGTGTATGGGGAGCACTTCTTAGTTCATGCAAGATCCATCGAAATGTGACTTTGGGAGAATATGCTGCAGAAAAGCTTCTCTCATTAGATCCATATGAGATAGGGCATTATGTTCAACTGTCAAATCTCTATGCTTCGGCCCAATTATGGGATCGTGTTGCACAGGTGCGAGTACTGATGAGGGAGAAAGGACTGATCAAGGGCCTTGGACGTAGTTTGATTGAGATCAATGGAAAACTTCAGGCATTTCATGTAGGAGACAAGTCACATCCAAGGTCTAAGGAAATATATGAAGAGCTTGAGAGTCTAGAGAGGAGGTTGAAGGAGGCTGGCTTTGTTCCACATACAGAATCCGTCCTGCATGATTTGAATTATGAAGAGACAGAGGAGACACTTTGCAATCATAGTGAGAGGCTGGCAATTGCTTATGGCCTCATCTGTACTGCTCCTGGAACTACACTAAGAATAACTAAAAACCTACGCGCATGTGTGAATTGTCATGCAGCAACTAAGCTAATATCTAAGCTTGTCAACAGGGAGATAGTTGTCAGGGATGCAAAGCGTTTCCACCATTTCAAGGATGGATTTTGTTCCTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase HLH PPR PPR_2

Protein Analysis

730

Amino Acids

82.23

Weight (kDa)

7.57

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	120 - 167	4.1e-10	PPR repeat family
PPR_2	PF13041	222 - 267	2.8e-08	PPR repeat family
PPR	PF01535	224 - 254	2.9e-07	PPR repeat
PPR_2	PF13041	322 - 370	6.3e-13	PPR repeat family
PPR_1	PF12854	322 - 350	4.2e-08	PPR repeat
PPR	PF01535	326 - 354	5.2e-10	PPR repeat
PPR_2	PF13041	423 - 470	7.2e-09	PPR repeat family
E_motif	PF20431	540 - 602	1.2e-11	E motif
Eplus_motif	PF20430	610 - 634	1.8e-09	E+ motif
DYW_deaminase	PF14432	638 - 730	5.8e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12770
fragaria_vesca	FvH4_6g08230
malus_domestica	MD09G1101900.v1.1
prunus_persica	Prupe.3G223800_v2.0.a1
pyrus_communis	pycom09g02560
rosa_chinensis	RchiOBHm_Chr3g0458151
rosa_multiflora	Rmu_co8353983.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421260
rosa_rugosa	Rorug03G0025100
rosa_samantha	Rh3AG085800 Rh3BG088500 Rh3DG089500
rosa_wichuraiana	Rw3G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1553
AarI	CACCTGC	1 cut(s)	913
Acc16I	TGCGCA	1 cut(s)	702
Acc36I	ACCTGC	1 cut(s)	913
Acc65I	GGTACC	1 cut(s)	1369
AccB1I	GGYRCC	1 cut(s)	1369
AccB7I	CCANNNNNTGG	1 cut(s)	718
AccI	GTMKAC	2 cut(s)	803, 1230
AccII	CGCG	3 cut(s)	515, 630, 2064
AciI	CCGC	8 cut(s)	51, 270, 331, 422, 501, 513, 529, 1453
AclWI	GGATC	3 cut(s)	1609, 1664, 1740
AcoI	YGGCCR	2 cut(s)	510, 709
AcsI	RAATTY	2 cut(s)	56, 347
AcuI	CTGAAG	1 cut(s)	1805
AfaI	GTAC	6 cut(s)	252, 1371, 1428, 1579, 1755, 2023
AfiI	CCNNNNNNNGG	4 cut(s)	718, 1728, 1729, 2158
AgeI	ACCGGT	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	1520
AjnI	CCWGG	6 cut(s)	333, 543, 1110, 1477, 1573, 2029
Alw21I	GWGCWC	2 cut(s)	492, 1597
Alw26I	GTCTC	8 cut(s)	37, 75, 443, 596, 1455, 1833, 1955, 1964
AlwI	GGATC	3 cut(s)	1609, 1664, 1740
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	8 cut(s)	510, 526, 709, 1420, 1525, 1719, 1783, 2011
ApeKI	GCWGC	4 cut(s)	300, 1354, 1646, 2084
ApoI	RAATTY	2 cut(s)	56, 347
AsiGI	ACCGGT	1 cut(s)	452
Asp700I	GAANNNNTTC	3 cut(s)	365, 1072, 1656
Asp718I	GGTACC	1 cut(s)	1369
AspLEI	GCGC	6 cut(s)	241, 517, 632, 703, 1109, 2066
AspS9I	GGNCC	3 cut(s)	526, 1720, 1783
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	5 cut(s)	76, 154, 274, 668, 937
AsuII	TTCGAA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	311
BaeI	ACNNNNGTAYC	2 cut(s)	1569, 1602
BalI	TGGCCA	1 cut(s)	711
BanI	GGYRCC	1 cut(s)	1369
BauI	CACGAG	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	492, 1597
BbvI	GCAGC	4 cut(s)	312, 1366, 1633, 2096
BccI	CCATC	9 cut(s)	461, 641, 922, 949, 1135, 1431, 1494, 1626, 2156
BciT130I	CCWGG	6 cut(s)	335, 545, 1112, 1479, 1575, 2031
BclI	TGATCA	2 cut(s)	21, 1776
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	8 cut(s)	37, 75, 443, 596, 1455, 1833, 1955, 1964
BfaI	CTAG	5 cut(s)	122, 633, 1056, 1130, 1889
BfmI	CTRYAG	3 cut(s)	298, 1029, 1647
BfuAI	ACCTGC	1 cut(s)	913
BisI	GCNGC	7 cut(s)	271, 301, 513, 529, 1355, 1647, 2085
BlsI	GCNGC	7 cut(s)	272, 302, 514, 530, 1356, 1648, 2086
BmcAI	AGTACT	1 cut(s)	1755
Bme1390I	CCNGG	7 cut(s)	335, 533, 545, 1112, 1479, 1575, 2031
BmeT110I	CYCGRG	1 cut(s)	311
BmgBI	CACGTC	1 cut(s)	1520
BmgT120I	GGNCC	3 cut(s)	526, 1720, 1783
BmiI	GGNNCC	1 cut(s)	1371
BmrFI	CCNGG	7 cut(s)	335, 533, 545, 1112, 1479, 1575, 2031
BmrI	ACTGGG	1 cut(s)	263
BmsI	GCATC	4 cut(s)	409, 432, 1551, 2125
BmuI	ACTGGG	1 cut(s)	263
BplI	GAGNNNNNCTC	5 cut(s)	33, 19, 51, 1037, 1069
BpmI	CTGGAG	1 cut(s)	1303
Bpu14I	TTCGAA	1 cut(s)	398
BpuEI	CTTGAG	1 cut(s)	1901
BpuMI	CCSGG	1 cut(s)	533
Bsa29I	ATCGAT	1 cut(s)	198
BsaBI	GATNNNNATC	1 cut(s)	1805
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	4 cut(s)	310, 1110, 1786, 1853
BsaWI	WCCGGW	2 cut(s)	452, 766
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	718, 1728, 1729, 2158
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	3 cut(s)	258, 712, 1528
Bse3DI	GCAATG	2 cut(s)	538, 1296
Bse8I	GATNNNNATC	1 cut(s)	1805
BseBI	CCWGG	6 cut(s)	335, 545, 1112, 1479, 1575, 2031
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	4 cut(s)	310, 1110, 1786, 1853
BseGI	GGATG	9 cut(s)	447, 577, 851, 1146, 1150, 1442, 1849, 2140, 2167
BseJI	GATNNNNATC	1 cut(s)	1805
BseLI	CCNNNNNNNGG	4 cut(s)	718, 1728, 1729, 2158
BseMI	GCAATG	2 cut(s)	538, 1296
BseMII	CTCAG	5 cut(s)	86, 719, 1011, 1076, 1113
BseNI	ACTGG	3 cut(s)	258, 712, 1528
BseRI	GAGGAG	4 cut(s)	97, 102, 1909, 1982
BseXI	GCAGC	4 cut(s)	312, 1366, 1633, 2096
BseYI	CCCAGC	1 cut(s)	1361
BsgI	GTGCAG	2 cut(s)	602, 1542
Bsh1236I	CGCG	3 cut(s)	515, 630, 2064
BshFI	GGCC	8 cut(s)	512, 528, 711, 1422, 1527, 1721, 1785, 2013
BshNI	GGYRCC	1 cut(s)	1369
BshTI	ACCGGT	1 cut(s)	452
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	2 cut(s)	492, 1597
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	4 cut(s)	453, 532, 767, 996
BslFI	GGGAC	3 cut(s)	837, 876, 1530
BslI	CCNNNNNNNGG	4 cut(s)	718, 1728, 1729, 2158
BsmAI	GTCTC	8 cut(s)	37, 75, 443, 596, 1455, 1833, 1955, 1964
BsmFI	GGGAC	3 cut(s)	837, 876, 1530
BsmI	GAATGC	2 cut(s)	382, 988
BsnI	GGCC	8 cut(s)	512, 528, 711, 1422, 1527, 1721, 1785, 2013
Bso31I	GGTCTC	1 cut(s)	443
BsoBI	CYCGRG	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	492, 1597
Bsp1407I	TGTACA	1 cut(s)	1426
BspACI	CCGC	8 cut(s)	51, 270, 331, 422, 501, 513, 529, 1453
BspANI	GGCC	8 cut(s)	512, 528, 711, 1422, 1527, 1721, 1785, 2013
BspCNI	CTCAG	5 cut(s)	85, 720, 1012, 1077, 1112
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	3 cut(s)	515, 630, 2064
BspLI	GGNNCC	1 cut(s)	1371
BspMAI	CTGCAG	2 cut(s)	302, 1651
BspMI	ACCTGC	1 cut(s)	913
BspPI	GGATC	3 cut(s)	1609, 1664, 1740
BspQI	GCTCTTC	1 cut(s)	1869
BspT104I	TTCGAA	1 cut(s)	398
BspT107I	GGYRCC	1 cut(s)	1369
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	538, 1296
BsrFI	RCCGGY	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	1426
BsrI	ACTGG	3 cut(s)	258, 712, 1528
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	4 cut(s)	310, 1110, 1786, 1853
BssNAI	GTATAC	2 cut(s)	804, 1231
BssSI	CACGAG	1 cut(s)	593
BssT1I	CCWWGG	2 cut(s)	1786, 1853
Bst1107I	GTATAC	2 cut(s)	804, 1231
Bst2BI	CACGAG	1 cut(s)	593
Bst2UI	CCWGG	6 cut(s)	335, 545, 1112, 1479, 1575, 2031
Bst4CI	ACNGT	3 cut(s)	590, 1013, 1701
Bst6I	CTCTTC	4 cut(s)	51, 158, 1869, 1953
BstAUI	TGTACA	1 cut(s)	1426
BstBI	TTCGAA	1 cut(s)	398
BstF5I	GGATG	9 cut(s)	447, 577, 851, 1146, 1150, 1442, 1849, 2140, 2167
BstFNI	CGCG	3 cut(s)	515, 630, 2064
BstHHI	GCGC	6 cut(s)	241, 517, 632, 703, 1109, 2066
BstMAI	GTCTC	8 cut(s)	37, 75, 443, 596, 1455, 1833, 1955, 1964
BstMWI	GCNNNNNNNGC	4 cut(s)	605, 908, 1025, 1100
BstNI	CCWGG	6 cut(s)	335, 545, 1112, 1479, 1575, 2031
BstNSI	RCATGY	3 cut(s)	1107, 1410, 2070
BstSCI	CCNGG	7 cut(s)	333, 531, 543, 1110, 1477, 1573, 2029
BstSFI	CTRYAG	3 cut(s)	298, 1029, 1647
BstUI	CGCG	3 cut(s)	515, 630, 2064
BstV1I	GCAGC	4 cut(s)	312, 1366, 1633, 2096
BstX2I	RGATCY	2 cut(s)	1614, 1669
BstYI	RGATCY	2 cut(s)	1614, 1669
BstZ17I	GTATAC	2 cut(s)	804, 1231
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	8 cut(s)	512, 528, 711, 1422, 1527, 1721, 1785, 2013
BsuTUI	ATCGAT	1 cut(s)	198
BtrI	CACGTC	1 cut(s)	1520
BtsCI	GGATG	9 cut(s)	447, 577, 851, 1146, 1150, 1442, 1849, 2140, 2167
BtsIMutI	CAGTG	1 cut(s)	719
BveI	ACCTGC	1 cut(s)	913
CfoI	GCGC	6 cut(s)	241, 517, 632, 703, 1109, 2066
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	3 cut(s)	526, 1720, 1783
ClaI	ATCGAT	1 cut(s)	198
CsiI	ACCWGGT	1 cut(s)	1573
Csp6I	GTAC	6 cut(s)	251, 1370, 1427, 1578, 1754, 2022
CspAI	ACCGGT	1 cut(s)	452
CspCI	CAANNNNNGTGG	2 cut(s)	1278, 1313
CviQI	GTAC	6 cut(s)	251, 1370, 1427, 1578, 1754, 2022
EaeI	YGGCCR	2 cut(s)	510, 709
Eam1104I	CTCTTC	4 cut(s)	51, 158, 1869, 1953
EarI	CTCTTC	4 cut(s)	51, 158, 1869, 1953
Eco130I	CCWWGG	2 cut(s)	1786, 1853
Eco147I	AGGCCT	1 cut(s)	1422
Eco31I	GGTCTC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	1805
Eco88I	CYCGRG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	1783
EcoRII	CCWGG	6 cut(s)	333, 543, 1110, 1477, 1573, 2029
EcoT14I	CCWWGG	2 cut(s)	1786, 1853
ErhI	CCWWGG	2 cut(s)	1786, 1853
FalI	AAGNNNNNCTT	2 cut(s)	206, 238
FaqI	GGGAC	3 cut(s)	837, 876, 1530
FauI	CCCGC	2 cut(s)	58, 338
FauNDI	CATATG	1 cut(s)	1675
FbaI	TGATCA	2 cut(s)	21, 1776
FblI	GTMKAC	2 cut(s)	803, 1230
Fnu4HI	GCNGC	7 cut(s)	271, 301, 513, 529, 1355, 1647, 2085
FokI	GGATG	9 cut(s)	454, 584, 858, 1153, 1157, 1449, 1836, 2147, 2174
Fsp4HI	GCNGC	7 cut(s)	271, 301, 513, 529, 1355, 1647, 2085
FspBI	CTAG	5 cut(s)	122, 633, 1056, 1130, 1889
FspI	TGCGCA	1 cut(s)	702
GlaI	GCGC	6 cut(s)	240, 516, 631, 702, 1108, 2065
GluI	GCNGC	7 cut(s)	271, 301, 513, 529, 1355, 1647, 2085
GsaI	CCCAGC	1 cut(s)	1365
GsuI	CTGGAG	1 cut(s)	1303
HaeIII	GGCC	8 cut(s)	512, 528, 711, 1422, 1527, 1721, 1785, 2013
HapII	CCGG	4 cut(s)	453, 532, 767, 996
HhaI	GCGC	6 cut(s)	241, 517, 632, 703, 1109, 2066
Hin6I	GCGC	6 cut(s)	239, 515, 630, 701, 1107, 2064
HinP1I	GCGC	6 cut(s)	239, 515, 630, 701, 1107, 2064
HincII	GTYRAC	3 cut(s)	295, 1189, 2113
HindII	GTYRAC	3 cut(s)	295, 1189, 2113
HindIII	AAGCTT	3 cut(s)	495, 1655, 2105
HpaI	GTTAAC	2 cut(s)	295, 1189
HpaII	CCGG	4 cut(s)	453, 532, 767, 996
HphI	GGTGA	5 cut(s)	76, 154, 274, 668, 937
Hpy166II	GTNNAC	7 cut(s)	295, 678, 804, 1189, 1231, 1342, 2113
Hpy188I	TCNGA	7 cut(s)	21, 62, 139, 175, 571, 729, 1086
Hpy188III	TCNNGA	6 cut(s)	25, 464, 1056, 1124, 1282, 1889
Hpy8I	GTNNAC	7 cut(s)	295, 678, 804, 1189, 1231, 1342, 2113
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	97, 1897
HpyCH4III	ACNGT	3 cut(s)	590, 1013, 1701
HpyCH4IV	ACGT	2 cut(s)	1519, 1792
HpyF10VI	GCNNNNNNNGC	4 cut(s)	605, 908, 1025, 1100
HpySE526I	ACGT	2 cut(s)	1519, 1792
HspAI	GCGC	6 cut(s)	239, 515, 630, 701, 1107, 2064
KpnI	GGTACC	1 cut(s)	1373
Ksp22I	TGATCA	2 cut(s)	21, 1776
KspAI	GTTAAC	2 cut(s)	295, 1189
LguI	GCTCTTC	1 cut(s)	1869
LmnI	GCTCC	4 cut(s)	110, 1441, 1592, 2032
Lsp1109I	GCAGC	4 cut(s)	312, 1366, 1633, 2096
LweI	GCATC	4 cut(s)	409, 432, 1551, 2125
MabI	ACCWGGT	1 cut(s)	1573
MaeI	CTAG	5 cut(s)	122, 633, 1056, 1130, 1889
MaeII	ACGT	2 cut(s)	1519, 1792
MaeIII	GTNAC	3 cut(s)	1381, 1627, 1845
MboII	GAAGA	5 cut(s)	38, 145, 1502, 1886, 1970
MfeI	CAATTG	2 cut(s)	1566, 2001
MflI	RGATCY	2 cut(s)	1614, 1669
MhlI	GDGCHC	2 cut(s)	492, 1597
MlsI	TGGCCA	1 cut(s)	711
MluNI	TGGCCA	1 cut(s)	711
MlyI	GAGTC	8 cut(s)	10, 39, 119, 185, 469, 575, 1389, 1894
MmeI	TCCRAC	3 cut(s)	162, 549, 1512
Mox20I	TGGCCA	1 cut(s)	711
MroXI	GAANNNNTTC	3 cut(s)	365, 1072, 1656
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	4 cut(s)	278, 294, 855, 1188
MslI	CAYNNNNRTG	2 cut(s)	902, 1623
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	4 cut(s)	453, 532, 767, 996
MspR9I	CCNGG	7 cut(s)	335, 533, 545, 1112, 1479, 1575, 2031
MunI	CAATTG	2 cut(s)	1566, 2001
Mva1269I	GAATGC	2 cut(s)	382, 988
MvaI	CCWGG	6 cut(s)	335, 545, 1112, 1479, 1575, 2031
MvnI	CGCG	3 cut(s)	515, 630, 2064
MwoI	GCNNNNNNNGC	4 cut(s)	605, 908, 1025, 1100
NciI	CCSGG	1 cut(s)	533
NdeI	CATATG	1 cut(s)	1675
NlaIV	GGNNCC	1 cut(s)	1371
NmuCI	GTSAC	2 cut(s)	1627, 1845
NsbI	TGCGCA	1 cut(s)	702
NspI	RCATGY	3 cut(s)	1107, 1410, 2070
NspV	TTCGAA	1 cut(s)	398
PaeI	GCATGC	2 cut(s)	1107, 1410
PaqCI	CACCTGC	1 cut(s)	913
PceI	AGGCCT	1 cut(s)	1422
PciSI	GCTCTTC	1 cut(s)	1869
PcsI	WCGNNNNNNNCGW	2 cut(s)	671, 680
PctI	GAATGC	2 cut(s)	382, 988
PdmI	GAANNNNTTC	3 cut(s)	365, 1072, 1656
PfeI	GAWTC	4 cut(s)	170, 226, 1073, 1931
PflFI	GACNNNGTC	1 cut(s)	884
PflMI	CCANNNNNTGG	1 cut(s)	718
PfoI	TCCNGGA	1 cut(s)	2029
PinAI	ACCGGT	1 cut(s)	452
PkrI	GCNGC	7 cut(s)	272, 302, 514, 530, 1356, 1648, 2086
PleI	GAGTC	8 cut(s)	10, 38, 119, 184, 468, 574, 1389, 1893
PpsI	GAGTC	8 cut(s)	10, 38, 119, 184, 468, 574, 1389, 1893
PsiI	TTATAA	1 cut(s)	1553
Psp6I	CCWGG	6 cut(s)	333, 543, 1110, 1477, 1573, 2029
PspFI	CCCAGC	1 cut(s)	1361
PspGI	CCWGG	6 cut(s)	333, 543, 1110, 1477, 1573, 2029
PspN4I	GGNNCC	1 cut(s)	1371
PspPI	GGNCC	3 cut(s)	526, 1720, 1783
PstI	CTGCAG	2 cut(s)	302, 1651
PsuI	RGATCY	2 cut(s)	1614, 1669
PsyI	GACNNNGTC	1 cut(s)	884
RsaI	GTAC	6 cut(s)	252, 1371, 1428, 1579, 1755, 2023
RsaNI	GTAC	6 cut(s)	251, 1370, 1427, 1578, 1754, 2022
RseI	CAYNNNNRTG	2 cut(s)	902, 1623
SapI	GCTCTTC	1 cut(s)	1869
SaqAI	TTAA	4 cut(s)	278, 294, 855, 1188
SatI	GCNGC	7 cut(s)	271, 301, 513, 529, 1355, 1647, 2085
Sau96I	GGNCC	3 cut(s)	526, 1720, 1783
ScaI	AGTACT	1 cut(s)	1755
SchI	GAGTC	8 cut(s)	10, 39, 119, 185, 469, 575, 1389, 1894
ScrFI	CCNGG	7 cut(s)	335, 533, 545, 1112, 1479, 1575, 2031
SduI	GDGCHC	2 cut(s)	492, 1597
SexAI	ACCWGGT	1 cut(s)	1573
SfaNI	GCATC	4 cut(s)	409, 432, 1551, 2125
SfcI	CTRYAG	3 cut(s)	298, 1029, 1647
SfuI	TTCGAA	1 cut(s)	398
SmiMI	CAYNNNNRTG	2 cut(s)	902, 1623
SmlI	CTYRAG	1 cut(s)	1880
SmoI	CTYRAG	1 cut(s)	1880
SphI	GCATGC	2 cut(s)	1107, 1410
SseBI	AGGCCT	1 cut(s)	1422
SsiI	CCGC	8 cut(s)	51, 270, 331, 422, 501, 513, 529, 1453
SspMI	CTAG	5 cut(s)	122, 633, 1056, 1130, 1889
StuI	AGGCCT	1 cut(s)	1422
StyD4I	CCNGG	7 cut(s)	333, 531, 543, 1110, 1477, 1573, 2029
StyI	CCWWGG	2 cut(s)	1786, 1853
TaaI	ACNGT	3 cut(s)	590, 1013, 1701
TaiI	ACGT	2 cut(s)	1522, 1795
TaqI	TCGA	7 cut(s)	198, 342, 398, 553, 683, 1318, 1621
TatI	WGTACW	4 cut(s)	250, 1426, 1753, 2021
TauI	GCSGC	3 cut(s)	273, 515, 531
TfiI	GAWTC	4 cut(s)	170, 226, 1073, 1931
Tru1I	TTAA	4 cut(s)	278, 294, 855, 1188
Tru9I	TTAA	4 cut(s)	278, 294, 855, 1188
TscAI	CASTG	1 cut(s)	719
TseFI	GTSAC	2 cut(s)	1627, 1845
TseI	GCWGC	4 cut(s)	300, 1354, 1646, 2084
Tsp45I	GTSAC	2 cut(s)	1627, 1845
TspGWI	ACGGA	2 cut(s)	1031, 1924
TspRI	CASTG	1 cut(s)	719
Tth111I	GACNNNGTC	1 cut(s)	884
Van91I	CCANNNNNTGG	1 cut(s)	718
XapI	RAATTY	2 cut(s)	56, 347
XbaI	TCTAGA	2 cut(s)	1055, 1888
XceI	RCATGY	3 cut(s)	1107, 1410, 2070
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2159
XmiI	GTMKAC	2 cut(s)	803, 1230
XmnI	GAANNNNTTC	3 cut(s)	365, 1072, 1656
XspI	CTAG	5 cut(s)	122, 633, 1056, 1130, 1889
ZrmI	AGTACT	1 cut(s)	1755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.