Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0017162

Physical Location & Seq

Genomic Coordinates Reverse (-)

1971555 .. 1972337

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0025100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAGCGTGTTCGAAAATTTTCGGTGCATTTACATGTTGCTGCTGTACTTGCCAAGCAAATCATGATCAACACATCTCACACCCCCAACAACACTCAAAACCTTCACTACCGACTCATGATCATGCTGACAAAGCTCATCATGACCACAATCAAAACAGAATAGTTGACGATTCCCAAGGAGCCAATGCAAAACAGTTCACTACTGACAAGAGACAACATCATGCTTCCCAGCTACATGGTAAGCAAGGGGGTCAAAAGTCAGGACTAGGTACCGATGATCGATTTTCTGACTACATTAGCCGAGCAAAGGTTAAAATCAGGACCATGACGATGAACGTTGGTGGTGGGAATAAGCAGAATGCCCCCAACTCCAAAGAAGATGGCCAGAATGATACAAAGCATGAAGATCATACTAAAGATGCTTTTTCAGACTATATTAAACGCGTCAAGATTAAGATCAGACAGACAACCAGTAGTGCAAGCAGAAAGAATTTTAAAGAGAGCAAGCAGGAGAAGCCAGGCAAATACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase HLH PPR PPR_2

Protein Analysis

178

Amino Acids

19.99

Weight (kDa)

9.37

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12770
fragaria_vesca	FvH4_6g08230
malus_domestica	MD09G1101900.v1.1
prunus_persica	Prupe.3G223800_v2.0.a1
pyrus_communis	pycom09g02560
rosa_chinensis	RchiOBHm_Chr3g0458151
rosa_multiflora	Rmu_co8353983.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421260
rosa_rugosa	Rorug03G0025100
rosa_samantha	Rh3AG085800 Rh3BG088500 Rh3DG089500
rosa_wichuraiana	Rw3G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AccII	CGCG	1 cut(s)	447
AclI	AACGTT	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	18, 493
AfaI	GTAC	2 cut(s)	49, 274
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	2 cut(s)	35, 445
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	2 cut(s)	137, 235
AluI	AGCT	2 cut(s)	137, 235
Alw26I	GTCTC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	2 cut(s)	5, 42
ApoI	RAATTY	2 cut(s)	18, 493
Asp700I	GAANNNNTTC	1 cut(s)	20
Asp718I	GGTACC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	324
AsuII	TTCGAA	1 cut(s)	14
AvaII	GGWCC	1 cut(s)	324
BalI	TGGCCA	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	272
BbvI	GCAGC	2 cut(s)	17, 29
BccI	CCATC	1 cut(s)	377
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	522
BclI	TGATCA	2 cut(s)	67, 121
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	269
BisI	GCNGC	2 cut(s)	6, 43
BlsI	GCNGC	2 cut(s)	7, 44
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	184, 274
BmrFI	CCNGG	1 cut(s)	522
BmsI	GCATC	1 cut(s)	412
Bpu14I	TTCGAA	1 cut(s)	14
Bsa29I	ATCGAT	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	522
BseCI	ATCGAT	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	178
BseJI	GATNNNNATC	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	474
BseXI	GCAGC	2 cut(s)	17, 29
BseYI	CCCAGC	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	387
BshNI	GGYRCC	1 cut(s)	272
BshVI	ATCGAT	1 cut(s)	283
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	208
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	387
Bsp119I	TTCGAA	1 cut(s)	14
Bsp143I	GATC	5 cut(s)	67, 121, 280, 409, 459
BspANI	GGCC	1 cut(s)	387
BspDI	ATCGAT	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	447
BspHI	TCATGA	3 cut(s)	64, 118, 142
BspLI	GGNNCC	2 cut(s)	184, 274
BspT104I	TTCGAA	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	5 cut(s)	67, 121, 280, 409, 459
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	198
BstBI	TTCGAA	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	484, 509
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	5 cut(s)	70, 124, 283, 412, 462
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	5 cut(s)	67, 121, 280, 409, 459
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 134, 517
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	520
BstUI	CGCG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	17, 29
BstXI	CCANNNNNNTGG	1 cut(s)	239
Bsu15I	ATCGAT	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	387
BsuTUI	ATCGAT	1 cut(s)	283
Cac8I	GCNNGC	2 cut(s)	484, 509
CciI	TCATGA	3 cut(s)	64, 118, 142
Cfr13I	GGNCC	1 cut(s)	324
ClaI	ATCGAT	1 cut(s)	283
CseI	GACGC	1 cut(s)	436
Csp6I	GTAC	2 cut(s)	48, 273
CviAII	CATG	9 cut(s)	36, 65, 119, 125, 143, 224, 239, 328, 404
CviJI	RGCY	6 cut(s)	137, 185, 235, 303, 387, 520
CviKI_1	RGCY	6 cut(s)	137, 185, 235, 303, 387, 520
CviQI	GTAC	2 cut(s)	48, 273
DpnI	GATC	5 cut(s)	69, 123, 282, 411, 461
DpnII	GATC	5 cut(s)	67, 121, 280, 409, 459
DraI	TTTAAA	1 cut(s)	499
EaeI	YGGCCR	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	9 cut(s)	39, 68, 122, 128, 146, 227, 242, 331, 407
FatI	CATG	9 cut(s)	35, 64, 118, 124, 142, 223, 238, 327, 403
FbaI	TGATCA	2 cut(s)	67, 121
Fnu4HI	GCNGC	2 cut(s)	6, 43
Fsp4HI	GCNGC	2 cut(s)	6, 43
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	2 cut(s)	6, 43
GsaI	CCCAGC	1 cut(s)	235
HaeIII	GGCC	1 cut(s)	387
HgaI	GACGC	1 cut(s)	436
Hin1II	CATG	9 cut(s)	39, 68, 122, 128, 146, 227, 242, 331, 407
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	115, 173
Hpy166II	GTNNAC	2 cut(s)	169, 201
Hpy188I	TCNGA	3 cut(s)	292, 433, 464
Hpy188III	TCNNGA	6 cut(s)	65, 119, 143, 264, 322, 451
Hpy8I	GTNNAC	2 cut(s)	169, 201
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	29, 191, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 134, 517
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	9 cut(s)	39, 68, 122, 128, 146, 227, 242, 331, 407
KpnI	GGTACC	1 cut(s)	276
Ksp22I	TGATCA	2 cut(s)	67, 121
Kzo9I	GATC	5 cut(s)	67, 121, 280, 409, 459
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	7 cut(s)	245, 249, 307, 401, 487, 497, 507
Lsp1109I	GCAGC	2 cut(s)	17, 29
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	339
MalI	GATC	5 cut(s)	69, 123, 282, 411, 461
MboI	GATC	5 cut(s)	67, 121, 280, 409, 459
MboII	GAAGA	2 cut(s)	392, 419
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	2 cut(s)	18, 493
MluI	ACGCGT	1 cut(s)	445
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	109
Mox20I	TGGCCA	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	20
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	4 cut(s)	315, 441, 456, 498
MslI	CAYNNNNRTG	3 cut(s)	34, 123, 332
Msp20I	TGGCCA	1 cut(s)	387
MspR9I	CCNGG	1 cut(s)	522
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	3 cut(s)	51, 134, 517
NdeII	GATC	5 cut(s)	67, 121, 280, 409, 459
NlaIII	CATG	9 cut(s)	39, 68, 122, 128, 146, 227, 242, 331, 407
NlaIV	GGNNCC	2 cut(s)	184, 274
NmeAIII	GCCGAG	1 cut(s)	329
NspI	RCATGY	1 cut(s)	39
NspV	TTCGAA	1 cut(s)	14
PagI	TCATGA	3 cut(s)	64, 118, 142
PciI	ACATGT	1 cut(s)	35
PctI	GAATGC	1 cut(s)	367
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	7, 44
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PscI	ACATGT	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	2 cut(s)	184, 274
PspPI	GGNCC	1 cut(s)	324
RsaI	GTAC	2 cut(s)	49, 274
RsaNI	GTAC	2 cut(s)	48, 273
RseI	CAYNNNNRTG	3 cut(s)	34, 123, 332
SaqAI	TTAA	4 cut(s)	315, 441, 456, 498
SatI	GCNGC	2 cut(s)	6, 43
Sau3AI	GATC	5 cut(s)	67, 121, 280, 409, 459
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	522
SetI	ASST	6 cut(s)	106, 139, 237, 274, 315, 342
SfaNI	GCATC	1 cut(s)	412
SfuI	TTCGAA	1 cut(s)	14
SinI	GGWCC	1 cut(s)	324
SmiMI	CAYNNNNRTG	3 cut(s)	34, 123, 332
Sse9I	AATT	2 cut(s)	18, 493
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	14, 283
TasI	AATT	2 cut(s)	18, 493
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	4 cut(s)	315, 441, 456, 498
Tru9I	TTAA	4 cut(s)	315, 441, 456, 498
TseI	GCWGC	2 cut(s)	5, 42
TspDTI	ATGAA	2 cut(s)	350, 420
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	2 cut(s)	18, 493
XceI	RCATGY	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.