Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0017162

Physical Location & Seq

Genomic Coordinates Forward (+)

6739957 .. 6742647

Gene Structure 2691 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2277 bp

ATGTGCTTCTTGTACAGTATGTTTGCTCACCTCCTTGAGAGAACGTTGCTGATATCATATGTGAAATTTTGCTACTCCGTGGTGATGGGTGTGAGTTTGACTCTGATCAAGAGACTCTCTCTGCTTCCTCTTCCCGCCAAATTCCGAACTCTGTCTCAGTTTTCATTCACCTTCTCCAGTCACTATTGCTCCTCTCCTCTCAACCTAGACTCATACTTCTCCGACGACCATACCCTCCTCCATTTCACCTACGATTCCGAGTCATTCTTTGCCTCTCTCATCGATAATTCCACCCACAAGAGCCACTTGAATCAAATCCAAGCGCAGTTGCTTGTACTGGGTTTCCAAGCCAGCGGCTTTTTAATCACCAAATTAGTAAACTGCAGCTCAAACCTCGGGTACATTTCATACGCCCGCCAGGTGTTCGATGAATTTACTGACCCGAATGTGTTCCTGTGGAATGCAATCGTTCGCGGCTATTCGAAGCACAATGCGTTTGCTGATGCCGTAGAAATGTATTGTAGGATGCAAGAGACCGGTGTGAGTCCAGATGGCTTTACTTTCCCTCATGTGCTCAAAGCTTGCGGTGGCTTGGCCGCGCTTGAAATGGGCCGCCGGGTTCACTGCCAGGTGTTTCGACATGGGTTTGAGTCGGATGTGTTTGTGCAGAACAGTCTCGTGGCGTTTTATGCCAAATGTGGTAGAGTAGAACGCGCTAGGATTGTGTTTGATGGGTTGGGTGAGAGGTCGGTTGTTTCGTGGACTTCGATCATTTCAGGGTATGCGCAGAATGGCCAGTGTTTGGAAGCTCTGAGAGTTTTTAGTGTGATGAGAGAGTTGAATGTTAGACCGGATTGGATTGTTTTGGTTAGTGTTCTCAAAGCGTATACTGATGTAGAGGACTTGGGACAGGGGAGGTCTGTTCATGGATGTTTAGTTAAAATGGGACTTGACTTTGAACCTGACTTGGTCATTTCACTCACAGCCATGTATGCTAAAAGTGGGCAGGTGATGGTTGCCAGATCATTTTTTGATAAGATGGAAAGACCAAATGTAATGATGTGGAATGCTATGATTTCCGGCTATGCAAAGAACGGTCATGCTGAGAAAGCTGTAGAGCTATTCCGTGAGATGATCTCTAGAAGCATTATAATTGATTCAATTACTCTGAGGTCTGCTATCTCAGCATGCGCCCAGGTGGGTTCTCTTGAACTAGCGAAATGGATGGATGATTATATCAGCAAAAGTGAGTATAGAAATCATGTTTTTGTTAACACAGCCCTAATTGATATGTATGCAAAATGTGGTAGTGTAGATTTTGCTCGCATGGTCTTTGATAGAACACCTAATAAAGATGTTGTCGTCTGGAGTGCAATGATTGTGGGCTATGGATTGCATGGTCGAGGACAAGATGCCATTGATGTTTACTATTCTATGCAGCAGGCTGGGGTGGTGCCAAATGATGTTACCTTTCTTGGACTCCTTACTGCATGCAACCATTCAGGCTTTGTACATGAGGGATGGGAGCTTTTCCACCGCATGAGAGACTATGGGATTGAGCCTGGAAACCATCATTATTCATGTGTGGTTGATCTTCTGGGACGTGCAGGCCAGTTGGAACAGGCTTATGATTTTATAAAAAAGATGCCAATTGAACCTGGTACAAGTGTATGGGGAGCACTTCTTAGTTCATGCAAGATCCATCGAAATGTGACTTTGGGAGAATATGCTGCAGAAAAGCTTCTCTCATTAGATCCATATGAGATAGGGCATTATGTGCAACTGTCAAATCTCTATGCTTCAGCCCAATTATGGGATCGTGTTGCACATGTGCGAGTACTGATGAGGGAGAAAGGACTGATCAAGGGCCTTGGACGTAGTTTGATTGAGATCAATGGAAAACTTCAGGCATTTCATGTAGGAGACAAGTCACATCCAAGGTCTAAGGAAATATATGAAGAGCTTGAGAGTCTAGAGAGGAGGTTGAAGGAGGCTGGATTTGTTCCACATACAGAATCCGTCCTGCATGATTTGAATTATGAAGAGACAGAGGAGACACTTTGCAATCATAGTGAGAGGCTGGCAATTGCTTATGGCCTCATCTGTACTGCTCCTGGAACTACACTAAGAATAACTAAAAACCTACGCGCATGTGTGAATTGTCATGCAGCAACTAAGCTAATATCTAAGCTTGTCAACAGGGAGATAGTTGTCAGGGATGCAAAGCGTTTCCACCATTTCAAGGATGGATTTTGTTCCTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase HLH PPR PPR_2

Protein Analysis

758

Amino Acids

85.55

Weight (kDa)

6.87

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	148 - 195	4.3e-10	PPR repeat family
PPR_2	PF13041	250 - 295	8.4e-08	PPR repeat family
PPR	PF01535	252 - 282	2.5e-07	PPR repeat
PPR_2	PF13041	350 - 398	2.1e-12	PPR repeat family
PPR_1	PF12854	350 - 378	4.3e-08	PPR repeat
PPR	PF01535	354 - 382	5.5e-10	PPR repeat
PPR_2	PF13041	451 - 498	1.3e-08	PPR repeat family
E_motif	PF20431	568 - 630	1.8e-11	E motif
Eplus_motif	PF20430	638 - 662	1.8e-09	E+ motif
DYW_deaminase	PF14432	666 - 758	6.1e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12770
fragaria_vesca	FvH4_6g08230
malus_domestica	MD09G1101900.v1.1
prunus_persica	Prupe.3G223800_v2.0.a1
pyrus_communis	pycom09g02560
rosa_chinensis	RchiOBHm_Chr3g0458151
rosa_multiflora	Rmu_co8353983.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421260
rosa_rugosa	Rorug03G0025100
rosa_samantha	Rh3AG085800 Rh3BG088500 Rh3DG089500
rosa_wichuraiana	Rw3G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1151, 1637
AarI	CACCTGC	1 cut(s)	997
Acc16I	TGCGCA	1 cut(s)	786
Acc36I	ACCTGC	1 cut(s)	997
AccB1I	GGYRCC	1 cut(s)	1453
AccB7I	CCANNNNNTGG	1 cut(s)	802
AccI	GTMKAC	1 cut(s)	887
AccII	CGCG	4 cut(s)	474, 599, 714, 2148
AciI	CCGC	8 cut(s)	135, 354, 415, 474, 585, 597, 613, 1537
AclI	AACGTT	1 cut(s)	44
AclWI	GGATC	3 cut(s)	1693, 1748, 1824
AcoI	YGGCCR	2 cut(s)	594, 793
AcsI	RAATTY	3 cut(s)	65, 140, 431
AcuI	CTGAAG	2 cut(s)	1785, 1889
AfaI	GTAC	7 cut(s)	14, 336, 401, 1512, 1663, 1839, 2107
AfiI	CCNNNNNNNGG	4 cut(s)	802, 1812, 1813, 2242
AflIII	ACRYGT	1 cut(s)	1828
AgeI	ACCGGT	1 cut(s)	536
AjiI	CACGTC	1 cut(s)	1604
AjnI	CCWGG	6 cut(s)	417, 627, 1194, 1561, 1657, 2113
Alw21I	GWGCWC	2 cut(s)	576, 1681
Alw26I	GTCTC	8 cut(s)	106, 159, 527, 680, 1539, 1917, 2039, 2048
AlwI	GGATC	3 cut(s)	1693, 1748, 1824
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	6 cut(s)	594, 610, 793, 1609, 1867, 2095
ApeKI	GCWGC	4 cut(s)	384, 1438, 1730, 2168
ApoI	RAATTY	3 cut(s)	65, 140, 431
AsiGI	ACCGGT	1 cut(s)	536
Asp700I	GAANNNNTTC	2 cut(s)	449, 1740
AspLEI	GCGC	6 cut(s)	325, 601, 716, 787, 1193, 2150
AspS9I	GGNCC	2 cut(s)	610, 1867
AsuC2I	CCSGG	1 cut(s)	617
AsuHPI	GGTGA	7 cut(s)	20, 94, 160, 238, 358, 752, 1021
AsuII	TTCGAA	1 cut(s)	482
AvaI	CYCGRG	1 cut(s)	395
BaeI	ACNNNNGTAYC	2 cut(s)	1653, 1686
BalI	TGGCCA	1 cut(s)	795
BanI	GGYRCC	1 cut(s)	1453
BauI	CACGAG	1 cut(s)	677
Bbv12I	GWGCWC	2 cut(s)	576, 1681
BbvI	GCAGC	4 cut(s)	396, 1450, 1717, 2180
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	6 cut(s)	419, 629, 1196, 1563, 1659, 2115
BclI	TGATCA	2 cut(s)	105, 1860
BcnI	CCSGG	1 cut(s)	617
BcoDI	GTCTC	8 cut(s)	106, 159, 527, 680, 1539, 1917, 2039, 2048
BfaI	CTAG	5 cut(s)	206, 717, 1140, 1214, 1973
BfmI	CTRYAG	3 cut(s)	382, 1113, 1731
BfuAI	ACCTGC	1 cut(s)	997
BisI	GCNGC	8 cut(s)	355, 385, 475, 597, 613, 1439, 1731, 2169
BlsI	GCNGC	8 cut(s)	356, 386, 476, 598, 614, 1440, 1732, 2170
BmcAI	AGTACT	1 cut(s)	1839
Bme1390I	CCNGG	7 cut(s)	419, 617, 629, 1196, 1563, 1659, 2115
BmeT110I	CYCGRG	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	1604
BmgT120I	GGNCC	2 cut(s)	610, 1867
BmiI	GGNNCC	1 cut(s)	1455
BmrFI	CCNGG	7 cut(s)	419, 617, 629, 1196, 1563, 1659, 2115
BmrI	ACTGGG	1 cut(s)	347
BmsI	GCATC	5 cut(s)	493, 516, 1402, 1635, 2209
BmuI	ACTGGG	1 cut(s)	347
BplI	GAGNNNNNCTC	6 cut(s)	85, 117, 103, 135, 1121, 1153
BpmI	CTGGAG	2 cut(s)	160, 1387
Bpu14I	TTCGAA	1 cut(s)	482
BpuEI	CTTGAG	2 cut(s)	56, 1985
BpuMI	CCSGG	1 cut(s)	617
Bsa29I	ATCGAT	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	1889
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	5 cut(s)	78, 394, 1194, 1870, 1937
BsaWI	WCCGGW	2 cut(s)	536, 850
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	4 cut(s)	802, 1812, 1813, 2242
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	4 cut(s)	177, 342, 796, 1612
Bse3DI	GCAATG	1 cut(s)	1380
Bse8I	GATNNNNATC	1 cut(s)	1889
BseBI	CCWGG	6 cut(s)	419, 629, 1196, 1563, 1659, 2115
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	5 cut(s)	78, 394, 1194, 1870, 1937
BseGI	GGATG	9 cut(s)	531, 661, 935, 1230, 1234, 1526, 1933, 2224, 2251
BseJI	GATNNNNATC	1 cut(s)	1889
BseLI	CCNNNNNNNGG	4 cut(s)	802, 1812, 1813, 2242
BseMI	GCAATG	1 cut(s)	1380
BseMII	CTCAG	5 cut(s)	170, 803, 1095, 1160, 1197
BseNI	ACTGG	4 cut(s)	177, 342, 796, 1612
BseRI	GAGGAG	5 cut(s)	181, 186, 227, 1993, 2066
BseXI	GCAGC	4 cut(s)	396, 1450, 1717, 2180
BseYI	CCCAGC	1 cut(s)	1445
BsgI	GTGCAG	2 cut(s)	686, 1626
Bsh1236I	CGCG	4 cut(s)	474, 599, 714, 2148
BshFI	GGCC	6 cut(s)	596, 612, 795, 1611, 1869, 2097
BshNI	GGYRCC	1 cut(s)	1453
BshTI	ACCGGT	1 cut(s)	536
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	576, 1681
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	4 cut(s)	537, 616, 851, 1080
BslFI	GGGAC	3 cut(s)	921, 960, 1614
BslI	CCNNNNNNNGG	4 cut(s)	802, 1812, 1813, 2242
BsmAI	GTCTC	8 cut(s)	106, 159, 527, 680, 1539, 1917, 2039, 2048
BsmFI	GGGAC	3 cut(s)	921, 960, 1614
BsmI	GAATGC	2 cut(s)	466, 1072
BsnI	GGCC	6 cut(s)	596, 612, 795, 1611, 1869, 2097
Bso31I	GGTCTC	1 cut(s)	527
BsoBI	CYCGRG	1 cut(s)	395
Bsp119I	TTCGAA	1 cut(s)	482
Bsp1286I	GDGCHC	2 cut(s)	576, 1681
Bsp1407I	TGTACA	2 cut(s)	12, 1510
BspACI	CCGC	8 cut(s)	135, 354, 415, 474, 585, 597, 613, 1537
BspANI	GGCC	6 cut(s)	596, 612, 795, 1611, 1869, 2097
BspCNI	CTCAG	5 cut(s)	169, 804, 1096, 1161, 1196
BspDI	ATCGAT	1 cut(s)	282
BspFNI	CGCG	4 cut(s)	474, 599, 714, 2148
BspLI	GGNNCC	1 cut(s)	1455
BspMAI	CTGCAG	2 cut(s)	386, 1735
BspMI	ACCTGC	1 cut(s)	997
BspPI	GGATC	3 cut(s)	1693, 1748, 1824
BspQI	GCTCTTC	1 cut(s)	1953
BspT104I	TTCGAA	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	1453
BspTNI	GGTCTC	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	1380
BsrFI	RCCGGY	1 cut(s)	536
BsrGI	TGTACA	2 cut(s)	12, 1510
BsrI	ACTGG	4 cut(s)	177, 342, 796, 1612
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	5 cut(s)	78, 394, 1194, 1870, 1937
BssNAI	GTATAC	1 cut(s)	888
BssSI	CACGAG	1 cut(s)	677
BssT1I	CCWWGG	2 cut(s)	1870, 1937
Bst1107I	GTATAC	1 cut(s)	888
Bst2BI	CACGAG	1 cut(s)	677
Bst2UI	CCWGG	6 cut(s)	419, 629, 1196, 1563, 1659, 2115
Bst4CI	ACNGT	4 cut(s)	17, 674, 1097, 1785
Bst6I	CTCTTC	3 cut(s)	135, 1953, 2037
BstAPI	GCANNNNNTGC	1 cut(s)	1777
BstAUI	TGTACA	2 cut(s)	12, 1510
BstBI	TTCGAA	1 cut(s)	482
BstC8I	GCNNGC	9 cut(s)	352, 415, 583, 1189, 1324, 1443, 1492, 1609, 2082
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	9 cut(s)	531, 661, 935, 1230, 1234, 1526, 1933, 2224, 2251
BstFNI	CGCG	4 cut(s)	474, 599, 714, 2148
BstHHI	GCGC	6 cut(s)	325, 601, 716, 787, 1193, 2150
BstMAI	GTCTC	8 cut(s)	106, 159, 527, 680, 1539, 1917, 2039, 2048
BstMWI	GCNNNNNNNGC	5 cut(s)	689, 992, 1109, 1184, 1777
BstNI	CCWGG	6 cut(s)	419, 629, 1196, 1563, 1659, 2115
BstNSI	RCATGY	4 cut(s)	1191, 1494, 1832, 2154
BstSCI	CCNGG	7 cut(s)	417, 615, 627, 1194, 1561, 1657, 2113
BstSFI	CTRYAG	3 cut(s)	382, 1113, 1731
BstUI	CGCG	4 cut(s)	474, 599, 714, 2148
BstV1I	GCAGC	4 cut(s)	396, 1450, 1717, 2180
BstX2I	RGATCY	2 cut(s)	1698, 1753
BstYI	RGATCY	2 cut(s)	1698, 1753
BstZ17I	GTATAC	1 cut(s)	888
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	6 cut(s)	596, 612, 795, 1611, 1869, 2097
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	78
BtrI	CACGTC	1 cut(s)	1604
BtsCI	GGATG	9 cut(s)	531, 661, 935, 1230, 1234, 1526, 1933, 2224, 2251
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	622, 803
BveI	ACCTGC	1 cut(s)	997
Cac8I	GCNNGC	9 cut(s)	352, 415, 583, 1189, 1324, 1443, 1492, 1609, 2082
CfoI	GCGC	6 cut(s)	325, 601, 716, 787, 1193, 2150
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	2 cut(s)	610, 1867
ClaI	ATCGAT	1 cut(s)	282
CsiI	ACCWGGT	1 cut(s)	1657
Csp6I	GTAC	7 cut(s)	13, 335, 400, 1511, 1662, 1838, 2106
CspAI	ACCGGT	1 cut(s)	536
CspCI	CAANNNNNGTGG	2 cut(s)	1362, 1397
CviQI	GTAC	7 cut(s)	13, 335, 400, 1511, 1662, 1838, 2106
EaeI	YGGCCR	2 cut(s)	594, 793
Eam1104I	CTCTTC	3 cut(s)	135, 1953, 2037
EarI	CTCTTC	3 cut(s)	135, 1953, 2037
Eco130I	CCWWGG	2 cut(s)	1870, 1937
Eco31I	GGTCTC	1 cut(s)	527
Eco32I	GATATC	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	1785, 1889
Eco88I	CYCGRG	1 cut(s)	395
EcoO109I	RGGNCCY	1 cut(s)	1867
EcoRII	CCWGG	6 cut(s)	417, 627, 1194, 1561, 1657, 2113
EcoRV	GATATC	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	1870, 1937
ErhI	CCWWGG	2 cut(s)	1870, 1937
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	3 cut(s)	921, 960, 1614
FauI	CCCGC	2 cut(s)	142, 422
FauNDI	CATATG	2 cut(s)	58, 1759
FbaI	TGATCA	2 cut(s)	105, 1860
FblI	GTMKAC	1 cut(s)	887
Fnu4HI	GCNGC	8 cut(s)	355, 385, 475, 597, 613, 1439, 1731, 2169
FokI	GGATG	9 cut(s)	538, 668, 942, 1237, 1241, 1533, 1920, 2231, 2258
Fsp4HI	GCNGC	8 cut(s)	355, 385, 475, 597, 613, 1439, 1731, 2169
FspBI	CTAG	5 cut(s)	206, 717, 1140, 1214, 1973
FspI	TGCGCA	1 cut(s)	786
GlaI	GCGC	6 cut(s)	324, 600, 715, 786, 1192, 2149
GluI	GCNGC	8 cut(s)	355, 385, 475, 597, 613, 1439, 1731, 2169
GsaI	CCCAGC	1 cut(s)	1449
GsuI	CTGGAG	2 cut(s)	160, 1387
HaeIII	GGCC	6 cut(s)	596, 612, 795, 1611, 1869, 2097
HapII	CCGG	4 cut(s)	537, 616, 851, 1080
HhaI	GCGC	6 cut(s)	325, 601, 716, 787, 1193, 2150
Hin6I	GCGC	6 cut(s)	323, 599, 714, 785, 1191, 2148
HinP1I	GCGC	6 cut(s)	323, 599, 714, 785, 1191, 2148
HincII	GTYRAC	2 cut(s)	1273, 2197
HindII	GTYRAC	2 cut(s)	1273, 2197
HindIII	AAGCTT	3 cut(s)	579, 1739, 2189
HpaI	GTTAAC	1 cut(s)	1273
HpaII	CCGG	4 cut(s)	537, 616, 851, 1080
HphI	GGTGA	7 cut(s)	20, 94, 160, 238, 358, 752, 1021
Hpy166II	GTNNAC	7 cut(s)	379, 622, 762, 888, 1273, 1426, 2197
Hpy188I	TCNGA	7 cut(s)	105, 146, 223, 259, 655, 813, 1170
Hpy188III	TCNNGA	6 cut(s)	109, 548, 1140, 1208, 1366, 1973
Hpy8I	GTNNAC	7 cut(s)	379, 622, 762, 888, 1273, 1426, 2197
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	181, 1981
HpyCH4III	ACNGT	4 cut(s)	17, 674, 1097, 1785
HpyCH4IV	ACGT	3 cut(s)	44, 1603, 1876
HpyF10VI	GCNNNNNNNGC	5 cut(s)	689, 992, 1109, 1184, 1777
HpySE526I	ACGT	3 cut(s)	44, 1603, 1876
HspAI	GCGC	6 cut(s)	323, 599, 714, 785, 1191, 2148
Ksp22I	TGATCA	2 cut(s)	105, 1860
KspAI	GTTAAC	1 cut(s)	1273
LguI	GCTCTTC	1 cut(s)	1953
LmnI	GCTCC	4 cut(s)	194, 1525, 1676, 2116
Lsp1109I	GCAGC	4 cut(s)	396, 1450, 1717, 2180
LweI	GCATC	5 cut(s)	493, 516, 1402, 1635, 2209
MabI	ACCWGGT	1 cut(s)	1657
MaeI	CTAG	5 cut(s)	206, 717, 1140, 1214, 1973
MaeII	ACGT	3 cut(s)	44, 1603, 1876
MaeIII	GTNAC	4 cut(s)	179, 1465, 1711, 1929
MboII	GAAGA	4 cut(s)	122, 1586, 1970, 2054
MfeI	CAATTG	2 cut(s)	1650, 2085
MflI	RGATCY	2 cut(s)	1698, 1753
MhlI	GDGCHC	2 cut(s)	576, 1681
MlsI	TGGCCA	1 cut(s)	795
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	8 cut(s)	94, 108, 203, 269, 553, 659, 1473, 1978
MmeI	TCCRAC	3 cut(s)	246, 633, 1596
Mox20I	TGGCCA	1 cut(s)	795
MroXI	GAANNNNTTC	2 cut(s)	449, 1740
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	3 cut(s)	362, 939, 1272
MslI	CAYNNNNRTG	2 cut(s)	986, 1707
Msp20I	TGGCCA	1 cut(s)	795
MspA1I	CMGCKG	1 cut(s)	354
MspI	CCGG	4 cut(s)	537, 616, 851, 1080
MspR9I	CCNGG	7 cut(s)	419, 617, 629, 1196, 1563, 1659, 2115
MunI	CAATTG	2 cut(s)	1650, 2085
Mva1269I	GAATGC	2 cut(s)	466, 1072
MvaI	CCWGG	6 cut(s)	419, 629, 1196, 1563, 1659, 2115
MvnI	CGCG	4 cut(s)	474, 599, 714, 2148
MwoI	GCNNNNNNNGC	5 cut(s)	689, 992, 1109, 1184, 1777
NciI	CCSGG	1 cut(s)	617
NdeI	CATATG	2 cut(s)	58, 1759
NlaIV	GGNNCC	1 cut(s)	1455
NmuCI	GTSAC	3 cut(s)	179, 1711, 1929
NsbI	TGCGCA	1 cut(s)	786
NspI	RCATGY	4 cut(s)	1191, 1494, 1832, 2154
NspV	TTCGAA	1 cut(s)	482
PaeI	GCATGC	2 cut(s)	1191, 1494
PaqCI	CACCTGC	1 cut(s)	997
PciI	ACATGT	1 cut(s)	1828
PciSI	GCTCTTC	1 cut(s)	1953
PcsI	WCGNNNNNNNCGW	2 cut(s)	755, 764
PctI	GAATGC	2 cut(s)	466, 1072
PdmI	GAANNNNTTC	2 cut(s)	449, 1740
PfeI	GAWTC	4 cut(s)	254, 310, 1157, 2015
PflFI	GACNNNGTC	1 cut(s)	968
PflMI	CCANNNNNTGG	1 cut(s)	802
PfoI	TCCNGGA	1 cut(s)	2113
PinAI	ACCGGT	1 cut(s)	536
PkrI	GCNGC	8 cut(s)	356, 386, 476, 598, 614, 1440, 1732, 2170
PleI	GAGTC	8 cut(s)	94, 108, 203, 268, 552, 658, 1473, 1977
PpsI	GAGTC	8 cut(s)	94, 108, 203, 268, 552, 658, 1473, 1977
PscI	ACATGT	1 cut(s)	1828
PsiI	TTATAA	2 cut(s)	1151, 1637
Psp1406I	AACGTT	1 cut(s)	44
Psp6I	CCWGG	6 cut(s)	417, 627, 1194, 1561, 1657, 2113
PspFI	CCCAGC	1 cut(s)	1445
PspGI	CCWGG	6 cut(s)	417, 627, 1194, 1561, 1657, 2113
PspN4I	GGNNCC	1 cut(s)	1455
PspPI	GGNCC	2 cut(s)	610, 1867
PstI	CTGCAG	2 cut(s)	386, 1735
PsuI	RGATCY	2 cut(s)	1698, 1753
PsyI	GACNNNGTC	1 cut(s)	968
RsaI	GTAC	7 cut(s)	14, 336, 401, 1512, 1663, 1839, 2107
RsaNI	GTAC	7 cut(s)	13, 335, 400, 1511, 1662, 1838, 2106
RseI	CAYNNNNRTG	2 cut(s)	986, 1707
SapI	GCTCTTC	1 cut(s)	1953
SaqAI	TTAA	3 cut(s)	362, 939, 1272
SatI	GCNGC	8 cut(s)	355, 385, 475, 597, 613, 1439, 1731, 2169
Sau96I	GGNCC	2 cut(s)	610, 1867
ScaI	AGTACT	1 cut(s)	1839
SchI	GAGTC	8 cut(s)	94, 108, 203, 269, 553, 659, 1473, 1978
ScrFI	CCNGG	7 cut(s)	419, 617, 629, 1196, 1563, 1659, 2115
SduI	GDGCHC	2 cut(s)	576, 1681
SexAI	ACCWGGT	1 cut(s)	1657
SfaNI	GCATC	5 cut(s)	493, 516, 1402, 1635, 2209
SfcI	CTRYAG	3 cut(s)	382, 1113, 1731
SfuI	TTCGAA	1 cut(s)	482
SmiMI	CAYNNNNRTG	2 cut(s)	986, 1707
SmlI	CTYRAG	2 cut(s)	35, 1964
SmoI	CTYRAG	2 cut(s)	35, 1964
SphI	GCATGC	2 cut(s)	1191, 1494
SsiI	CCGC	8 cut(s)	135, 354, 415, 474, 585, 597, 613, 1537
SspMI	CTAG	5 cut(s)	206, 717, 1140, 1214, 1973
StyD4I	CCNGG	7 cut(s)	417, 615, 627, 1194, 1561, 1657, 2113
StyI	CCWWGG	2 cut(s)	1870, 1937
TaaI	ACNGT	4 cut(s)	17, 674, 1097, 1785
TaiI	ACGT	3 cut(s)	47, 1606, 1879
TaqI	TCGA	7 cut(s)	282, 426, 482, 637, 767, 1402, 1705
TatI	WGTACW	5 cut(s)	12, 334, 1510, 1837, 2105
TauI	GCSGC	4 cut(s)	357, 477, 599, 615
TfiI	GAWTC	4 cut(s)	254, 310, 1157, 2015
Tru1I	TTAA	3 cut(s)	362, 939, 1272
Tru9I	TTAA	3 cut(s)	362, 939, 1272
TscAI	CASTG	2 cut(s)	629, 803
TseFI	GTSAC	3 cut(s)	179, 1711, 1929
TseI	GCWGC	4 cut(s)	384, 1438, 1730, 2168
Tsp45I	GTSAC	3 cut(s)	179, 1711, 1929
TspDTI	ATGAA	9 cut(s)	153, 396, 444, 914, 1569, 1680, 1904, 1971, 2055
TspGWI	ACGGA	3 cut(s)	67, 1115, 2008
TspRI	CASTG	2 cut(s)	629, 803
Tth111I	GACNNNGTC	1 cut(s)	968
Van91I	CCANNNNNTGG	1 cut(s)	802
XapI	RAATTY	3 cut(s)	65, 140, 431
XbaI	TCTAGA	2 cut(s)	1139, 1972
XceI	RCATGY	4 cut(s)	1191, 1494, 1832, 2154
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2243
XmiI	GTMKAC	1 cut(s)	887
XmnI	GAANNNNTTC	2 cut(s)	449, 1740
XspI	CTAG	5 cut(s)	206, 717, 1140, 1214, 1973
ZrmI	AGTACT	1 cut(s)	1839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.