Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0017162

Physical Location & Seq

Genomic Coordinates Forward (+)

6906404 .. 6908674

Gene Structure 2271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG085800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGTTTGCATGTATTGGGGCTCACCTCCTTAAGAGAACGTTGCTGATATCATATGTGAAATTTAGCTACTCCGTGGTGATGGGTGTGAGTTTGACTCTGATCAAGAGAGTCTCTCTGCTTCCTCTTCCCGCCAAATTCCGAACTCTGTCTCAGTTTTCGTTCACCTTCTCCAATCACTATTGCTTCTCTCCTCTCAACCTGGACTCATACTTCTCCGACGACCATACCCTCCTCCATTTCACCTACGATTCCGAGTCATTCTTTGCCTCTCTCATCGATAATTCCACCCACAAGAGCCACTTGAATCAAATCCAAGCGCAGTTGCTTGTACTGGGTTTCCAAGCCAGCGGCTTTTTAATCACCAAATTAGTAAACTGCAGCTCAAACCTCGGGTACATTTCATACGCCCGCCAGGTGTTCGATGAATTCACTGACCCGAATGTGTTCCTGTGGAATGCAATCGTTCGGGGCTATTCCAAGCACAATGCGTTTGCTGATGCCGTAGAAATGTATTGTAGGATGCAAGAGACCGGCGTGAGTCCAGATGGCTTTACTTTCCCTCATGTCCTCAAAGCTTGCGGCGGCTTGGCCGCGCTTGAAATGGGCCGCCGGGTTCATTGCCAGGTGTTTCGACATGGGTTTGAGTCGGATGTGTTTGTGCAGAACAGTCTCGTGGCGTTTTATGCCAAATGTGGTAGAGTAGAACGCGCTAGGATTGTGTTTGATGGGTTGGGTGAGAGGTCGGTTGTTTCGTGGACTTCGATCATTTCAGGGTATGCGCAGAATGGCCAGTGTTTGGAAGCTCTGAGAGTTTTTAGTGTGATGAGAAAGTTGAATGTTAGACCGGATTGGATTGTTTTGGTTAGTGTTCTCAAAGCGTATACTGATGTAGAGGACTTGGGACAGGGGACGTCTGTTCATGGTTGTTTAGTTAAAATGGGACTTGACTTTGAACCTGACTTGGTCATTTCACTCACAGCCATGTATGCTAAAAGTGGGCAGGTGATGGTTGCCAGATCATTTTTTGATAAGATGGAAAGACCAAATGTAATGATGTGGAATGCTATGATTTCCGGCTATGCAAAGAACGGTCATGCTGAGAAAGCTGTAGAGCTATTGCGTGAGATGATCTCTAGAAGCATTGGAATTGATTCAATTACTCTGAGGTCTGCTATCTCAGCATGCGCCCAGGTGGGTTCTCTTGAACTAGCGATATGGATGGATGATTATATCAGCACAAATGAGTATAGAAATCATGTTTTTGTTAACACAGCCCTAATTGATATGTATGCAAAATGTGGTAGTGTAGATTTTGCTCGCATGGTCTTTGATAGAACACCTAATAAAGATGTTGTCGTCTGGAGTGCAATGATTGTGGGCTATGGATTGCATGGTCGAGGACAAGAAGCCATTGATGTTTACTATTCTATGCAGCAGGCTGGGGTGGTACCAAATGATGTTACCTTTCTTGGACTCCTTATTGCATGCAACCATTCAGGCCTTGTACATGAGGGATGGGAGCTTTTCCACCGCATGAGAGACTATGGGATTGAGCCTGGAAACCATCATTATTCGTGTGTGGTTGATCTTCTGGGACGTGCAGGCCAGTTGGAACAGGCTTATGATTTTATAAAAAAGATGCCAATTGAACCTGGTACAAGTGTCTGGGGAGCACTTCTTAGTTCATGCAAGATCCATCGCAATGTGACTTTGGGAGAATATGCTGCAGAAAAGCTTTTCTCATTAGATCCATATGAGATAGGGCATTATGTGCAACTGTCAAATCTCTATGCTTCAGCCCAATTATGGGATCGTGTTGCACATGTGCGAGTACTGATGAGGGAGAAAGGACTGATTAAGGGCCTTGGACATAGTTTGATTGAGATCAATGGAAAACTTCAGGCATTTCATGTAGGAGACAAGTCACATCCAAGGTCTAAGGAAATATATGAAGAGCTTGAGAGTCTAGAGAGGAGGTTGAGGGAGGCTGGATTTGTTCCACATACAGAATCCGTCCTGCATGATTTGAATTATGAAGAGACAGAGGAGACACTTTGCAATCATAGTGAGAGGCTGGCAATTGCTTATGGCCTCATCTGTACTGCTCCTGGAACTACACTAAGAATAACTAAAAACCTACGCGCGTGTGTGAATTGTCATGCAGCAACTAAGCTAATATCTAAGCTTGTCAACAGGGAGATAGTTGTCAGGGATGCAAAGCGTTTCCACCATTTCAAGGATGGATTTTGTTCCTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase HLH PPR PPR_2

Protein Analysis

756

Amino Acids

85.07

Weight (kDa)

6.88

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	146 - 193	4.3e-10	PPR repeat family
PPR_2	PF13041	248 - 293	2.9e-08	PPR repeat family
PPR	PF01535	250 - 280	3.1e-07	PPR repeat
PPR_2	PF13041	348 - 396	2.2e-11	PPR repeat family
PPR_1	PF12854	348 - 376	1e-07	PPR repeat
PPR	PF01535	352 - 380	2.9e-09	PPR repeat
PPR_2	PF13041	449 - 496	4e-08	PPR repeat family
E_motif	PF20431	566 - 628	4.3e-11	E motif
Eplus_motif	PF20430	636 - 660	1.8e-09	E+ motif
DYW_deaminase	PF14432	664 - 756	6.1e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017162)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12770
fragaria_vesca	FvH4_6g08230
malus_domestica	MD09G1101900.v1.1
prunus_persica	Prupe.3G223800_v2.0.a1
pyrus_communis	pycom09g02560
rosa_chinensis	RchiOBHm_Chr3g0458151
rosa_multiflora	Rmu_co8353983.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421260
rosa_rugosa	Rorug03G0025100
rosa_samantha	Rh3AG085800 Rh3BG088500 Rh3DG089500
rosa_wichuraiana	Rw3G007290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1631
AarI	CACCTGC	1 cut(s)	991
AatII	GACGTC	1 cut(s)	914
Acc16I	TGCGCA	1 cut(s)	780
Acc36I	ACCTGC	1 cut(s)	991
Acc65I	GGTACC	1 cut(s)	1447
AccB1I	GGYRCC	1 cut(s)	1447
AccB7I	CCANNNNNTGG	1 cut(s)	796
AccI	GTMKAC	1 cut(s)	881
AccII	CGCG	4 cut(s)	593, 708, 2142, 2144
AciI	CCGC	8 cut(s)	129, 348, 409, 579, 582, 591, 607, 1531
AclI	AACGTT	1 cut(s)	38
AclWI	GGATC	3 cut(s)	1687, 1742, 1818
AcoI	YGGCCR	2 cut(s)	588, 787
AcsI	RAATTY	3 cut(s)	59, 134, 425
AcuI	CTGAAG	2 cut(s)	1779, 1883
AcyI	GRCGYC	1 cut(s)	911
AfaI	GTAC	7 cut(s)	330, 395, 1449, 1506, 1657, 1833, 2101
AfiI	CCNNNNNNNGG	4 cut(s)	796, 1806, 1807, 2236
AflII	CTTAAG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	1822
AgsI	TTSAA	9 cut(s)	304, 599, 835, 953, 1155, 1205, 1649, 2029, 2236
AjiI	CACGTC	1 cut(s)	1598
AjnI	CCWGG	7 cut(s)	198, 411, 621, 1188, 1555, 1651, 2107
Alw21I	GWGCWC	1 cut(s)	1675
Alw26I	GTCTC	8 cut(s)	115, 153, 521, 674, 1533, 1911, 2033, 2042
AlwI	GGATC	3 cut(s)	1687, 1742, 1818
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	7 cut(s)	588, 604, 787, 1498, 1603, 1861, 2089
ApeKI	GCWGC	4 cut(s)	378, 1432, 1724, 2162
ApoI	RAATTY	3 cut(s)	59, 134, 425
Asp700I	GAANNNNTTC	2 cut(s)	443, 1150
Asp718I	GGTACC	1 cut(s)	1447
AspLEI	GCGC	6 cut(s)	319, 595, 710, 781, 1187, 2144
AspS9I	GGNCC	2 cut(s)	604, 1861
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	7 cut(s)	14, 88, 154, 232, 352, 746, 1015
AvaI	CYCGRG	1 cut(s)	389
BaeI	ACNNNNGTAYC	2 cut(s)	1647, 1680
BalI	TGGCCA	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	1447
BanII	GRGCYC	1 cut(s)	22
BauI	CACGAG	1 cut(s)	671
Bbv12I	GWGCWC	1 cut(s)	1675
BbvI	GCAGC	4 cut(s)	390, 1444, 1711, 2174
BceAI	ACGGC	1 cut(s)	485
BciT130I	CCWGG	7 cut(s)	200, 413, 623, 1190, 1557, 1653, 2109
BclI	TGATCA	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	8 cut(s)	115, 153, 521, 674, 1533, 1911, 2033, 2042
BfaI	CTAG	4 cut(s)	711, 1134, 1208, 1967
BfmI	CTRYAG	3 cut(s)	376, 1107, 1725
BfrI	CTTAAG	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	991
BisI	GCNGC	9 cut(s)	349, 379, 580, 583, 591, 607, 1433, 1725, 2163
BlsI	GCNGC	9 cut(s)	350, 380, 581, 584, 592, 608, 1434, 1726, 2164
BmcAI	AGTACT	1 cut(s)	1833
Bme1390I	CCNGG	8 cut(s)	200, 413, 611, 623, 1190, 1557, 1653, 2109
BmeT110I	CYCGRG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	1598
BmgT120I	GGNCC	2 cut(s)	604, 1861
BmiI	GGNNCC	1 cut(s)	1449
BmrFI	CCNGG	8 cut(s)	200, 413, 611, 623, 1190, 1557, 1653, 2109
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	4 cut(s)	487, 510, 1629, 2203
BmuI	ACTGGG	1 cut(s)	341
BplI	GAGNNNNNCTC	6 cut(s)	79, 111, 97, 129, 1115, 1147
BpmI	CTGGAG	1 cut(s)	1381
BpuEI	CTTGAG	1 cut(s)	1979
BpuMI	CCSGG	1 cut(s)	611
Bsa29I	ATCGAT	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	1883
BsaHI	GRCGYC	1 cut(s)	911
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	5 cut(s)	72, 388, 1188, 1864, 1931
BsaWI	WCCGGW	1 cut(s)	844
Bsc4I	CCNNNNNNNGG	4 cut(s)	796, 1806, 1807, 2236
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	3 cut(s)	336, 790, 1606
Bse3DI	GCAATG	3 cut(s)	616, 1374, 1708
Bse8I	GATNNNNATC	1 cut(s)	1883
BseBI	CCWGG	7 cut(s)	200, 413, 623, 1190, 1557, 1653, 2109
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	5 cut(s)	72, 388, 1188, 1864, 1931
BseGI	GGATG	8 cut(s)	525, 655, 1224, 1228, 1520, 1927, 2218, 2245
BseJI	GATNNNNATC	1 cut(s)	1883
BseLI	CCNNNNNNNGG	4 cut(s)	796, 1806, 1807, 2236
BseMI	GCAATG	3 cut(s)	616, 1374, 1708
BseMII	CTCAG	5 cut(s)	164, 797, 1089, 1154, 1191
BseNI	ACTGG	3 cut(s)	336, 790, 1606
BseRI	GAGGAG	4 cut(s)	180, 221, 1987, 2060
BseXI	GCAGC	4 cut(s)	390, 1444, 1711, 2174
BseYI	CCCAGC	1 cut(s)	1439
BsgI	GTGCAG	2 cut(s)	680, 1620
Bsh1236I	CGCG	4 cut(s)	593, 708, 2142, 2144
BshFI	GGCC	7 cut(s)	590, 606, 789, 1500, 1605, 1863, 2091
BshNI	GGYRCC	1 cut(s)	1447
BshVI	ATCGAT	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	1675
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	4 cut(s)	531, 610, 845, 1074
BslFI	GGGAC	4 cut(s)	915, 922, 954, 1608
BslI	CCNNNNNNNGG	4 cut(s)	796, 1806, 1807, 2236
BsmAI	GTCTC	8 cut(s)	115, 153, 521, 674, 1533, 1911, 2033, 2042
BsmFI	GGGAC	4 cut(s)	915, 922, 954, 1608
BsmI	GAATGC	2 cut(s)	460, 1066
BsnI	GGCC	7 cut(s)	590, 606, 789, 1500, 1605, 1863, 2091
Bso31I	GGTCTC	1 cut(s)	521
BsoBI	CYCGRG	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	22, 1675
Bsp1407I	TGTACA	1 cut(s)	1504
Bsp143I	GATC	9 cut(s)	99, 762, 1016, 1128, 1585, 1692, 1747, 1810, 1884
BspACI	CCGC	8 cut(s)	129, 348, 409, 579, 582, 591, 607, 1531
BspANI	GGCC	7 cut(s)	590, 606, 789, 1500, 1605, 1863, 2091
BspCNI	CTCAG	5 cut(s)	163, 798, 1090, 1155, 1190
BspDI	ATCGAT	1 cut(s)	276
BspFNI	CGCG	4 cut(s)	593, 708, 2142, 2144
BspLI	GGNNCC	1 cut(s)	1449
BspMAI	CTGCAG	2 cut(s)	380, 1729
BspMI	ACCTGC	1 cut(s)	991
BspPI	GGATC	3 cut(s)	1687, 1742, 1818
BspQI	GCTCTTC	1 cut(s)	1947
BspT107I	GGYRCC	1 cut(s)	1447
BspTI	CTTAAG	1 cut(s)	29
BspTNI	GGTCTC	1 cut(s)	521
BsrDI	GCAATG	3 cut(s)	616, 1374, 1708
BsrFI	RCCGGY	1 cut(s)	530
BsrGI	TGTACA	1 cut(s)	1504
BsrI	ACTGG	3 cut(s)	336, 790, 1606
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	5 cut(s)	72, 388, 1188, 1864, 1931
BssMI	GATC	9 cut(s)	99, 762, 1016, 1128, 1585, 1692, 1747, 1810, 1884
BssNAI	GTATAC	1 cut(s)	882
BssNI	GRCGYC	1 cut(s)	911
BssSI	CACGAG	1 cut(s)	671
BssT1I	CCWWGG	2 cut(s)	1864, 1931
Bst1107I	GTATAC	1 cut(s)	882
Bst2BI	CACGAG	1 cut(s)	671
Bst2UI	CCWGG	7 cut(s)	200, 413, 623, 1190, 1557, 1653, 2109
Bst4CI	ACNGT	3 cut(s)	668, 1091, 1779
Bst6I	CTCTTC	3 cut(s)	129, 1947, 2031
BstACI	GRCGYC	1 cut(s)	911
BstAFI	CTTAAG	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	1771
BstAUI	TGTACA	1 cut(s)	1504
BstC8I	GCNNGC	9 cut(s)	346, 409, 577, 1183, 1318, 1437, 1486, 1603, 2076
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	8 cut(s)	525, 655, 1224, 1228, 1520, 1927, 2218, 2245
BstFNI	CGCG	4 cut(s)	593, 708, 2142, 2144
BstHHI	GCGC	6 cut(s)	319, 595, 710, 781, 1187, 2144
BstKTI	GATC	9 cut(s)	102, 765, 1019, 1131, 1588, 1695, 1750, 1813, 1887
BstMAI	GTCTC	8 cut(s)	115, 153, 521, 674, 1533, 1911, 2033, 2042
BstMBI	GATC	9 cut(s)	99, 762, 1016, 1128, 1585, 1692, 1747, 1810, 1884
BstMWI	GCNNNNNNNGC	5 cut(s)	683, 986, 1103, 1178, 1771
BstNI	CCWGG	7 cut(s)	200, 413, 623, 1190, 1557, 1653, 2109
BstNSI	RCATGY	4 cut(s)	12, 1185, 1488, 1826
BstSCI	CCNGG	8 cut(s)	198, 411, 609, 621, 1188, 1555, 1651, 2107
BstSFI	CTRYAG	3 cut(s)	376, 1107, 1725
BstUI	CGCG	4 cut(s)	593, 708, 2142, 2144
BstV1I	GCAGC	4 cut(s)	390, 1444, 1711, 2174
BstX2I	RGATCY	2 cut(s)	1692, 1747
BstYI	RGATCY	2 cut(s)	1692, 1747
BstZ17I	GTATAC	1 cut(s)	882
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	7 cut(s)	590, 606, 789, 1500, 1605, 1863, 2091
BsuTUI	ATCGAT	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	1682
BtrI	CACGTC	1 cut(s)	1598
BtsCI	GGATG	8 cut(s)	525, 655, 1224, 1228, 1520, 1927, 2218, 2245
BtsIMutI	CAGTG	2 cut(s)	429, 797
BveI	ACCTGC	1 cut(s)	991
Cac8I	GCNNGC	9 cut(s)	346, 409, 577, 1183, 1318, 1437, 1486, 1603, 2076
CfoI	GCGC	6 cut(s)	319, 595, 710, 781, 1187, 2144
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	604, 1861
ClaI	ATCGAT	1 cut(s)	276
CsiI	ACCWGGT	1 cut(s)	1651
Csp6I	GTAC	7 cut(s)	329, 394, 1448, 1505, 1656, 1832, 2100
CspCI	CAANNNNNGTGG	2 cut(s)	1356, 1391
CviQI	GTAC	7 cut(s)	329, 394, 1448, 1505, 1656, 1832, 2100
DpnI	GATC	9 cut(s)	101, 764, 1018, 1130, 1587, 1694, 1749, 1812, 1886
DpnII	GATC	9 cut(s)	99, 762, 1016, 1128, 1585, 1692, 1747, 1810, 1884
EaeI	YGGCCR	2 cut(s)	588, 787
Eam1104I	CTCTTC	3 cut(s)	129, 1947, 2031
EarI	CTCTTC	3 cut(s)	129, 1947, 2031
Eco130I	CCWWGG	2 cut(s)	1864, 1931
Eco147I	AGGCCT	1 cut(s)	1500
Eco24I	GRGCYC	1 cut(s)	22
Eco31I	GGTCTC	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	1779, 1883
Eco88I	CYCGRG	1 cut(s)	389
EcoO109I	RGGNCCY	1 cut(s)	1861
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	7 cut(s)	198, 411, 621, 1188, 1555, 1651, 2107
EcoRV	GATATC	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	1864, 1931
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	2 cut(s)	1864, 1931
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	4 cut(s)	915, 922, 954, 1608
FauI	CCCGC	2 cut(s)	136, 416
FauNDI	CATATG	2 cut(s)	52, 1753
FbaI	TGATCA	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	881
Fnu4HI	GCNGC	9 cut(s)	349, 379, 580, 583, 591, 607, 1433, 1725, 2163
FokI	GGATG	8 cut(s)	532, 662, 1231, 1235, 1527, 1914, 2225, 2252
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	9 cut(s)	349, 379, 580, 583, 591, 607, 1433, 1725, 2163
FspBI	CTAG	4 cut(s)	711, 1134, 1208, 1967
FspI	TGCGCA	1 cut(s)	780
GlaI	GCGC	6 cut(s)	318, 594, 709, 780, 1186, 2143
GluI	GCNGC	9 cut(s)	349, 379, 580, 583, 591, 607, 1433, 1725, 2163
GsaI	CCCAGC	1 cut(s)	1443
GsuI	CTGGAG	1 cut(s)	1381
HaeIII	GGCC	7 cut(s)	590, 606, 789, 1500, 1605, 1863, 2091
HapII	CCGG	4 cut(s)	531, 610, 845, 1074
HhaI	GCGC	6 cut(s)	319, 595, 710, 781, 1187, 2144
Hin1I	GRCGYC	1 cut(s)	911
Hin6I	GCGC	6 cut(s)	317, 593, 708, 779, 1185, 2142
HinP1I	GCGC	6 cut(s)	317, 593, 708, 779, 1185, 2142
HincII	GTYRAC	2 cut(s)	1267, 2191
HindII	GTYRAC	2 cut(s)	1267, 2191
HindIII	AAGCTT	3 cut(s)	573, 1733, 2183
HpaI	GTTAAC	1 cut(s)	1267
HpaII	CCGG	4 cut(s)	531, 610, 845, 1074
HphI	GGTGA	7 cut(s)	14, 88, 154, 232, 352, 746, 1015
Hpy166II	GTNNAC	7 cut(s)	162, 373, 756, 882, 1267, 1420, 2191
Hpy188I	TCNGA	7 cut(s)	99, 140, 217, 253, 649, 807, 1164
Hpy188III	TCNNGA	6 cut(s)	103, 542, 1134, 1202, 1360, 1967
Hpy8I	GTNNAC	7 cut(s)	162, 373, 756, 882, 1267, 1420, 2191
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	175
HpyCH4III	ACNGT	3 cut(s)	668, 1091, 1779
HpyCH4IV	ACGT	3 cut(s)	38, 911, 1597
HpyF10VI	GCNNNNNNNGC	5 cut(s)	683, 986, 1103, 1178, 1771
HpySE526I	ACGT	3 cut(s)	38, 911, 1597
Hsp92I	GRCGYC	1 cut(s)	911
HspAI	GCGC	6 cut(s)	317, 593, 708, 779, 1185, 2142
KpnI	GGTACC	1 cut(s)	1451
Ksp22I	TGATCA	1 cut(s)	99
KspAI	GTTAAC	1 cut(s)	1267
Kzo9I	GATC	9 cut(s)	99, 762, 1016, 1128, 1585, 1692, 1747, 1810, 1884
LguI	GCTCTTC	1 cut(s)	1947
LmnI	GCTCC	3 cut(s)	1519, 1670, 2110
Lsp1109I	GCAGC	4 cut(s)	390, 1444, 1711, 2174
LweI	GCATC	4 cut(s)	487, 510, 1629, 2203
MabI	ACCWGGT	1 cut(s)	1651
MaeI	CTAG	4 cut(s)	711, 1134, 1208, 1967
MaeII	ACGT	3 cut(s)	38, 911, 1597
MaeIII	GTNAC	3 cut(s)	1459, 1705, 1923
MalI	GATC	9 cut(s)	101, 764, 1018, 1130, 1587, 1694, 1749, 1812, 1886
MboI	GATC	9 cut(s)	99, 762, 1016, 1128, 1585, 1692, 1747, 1810, 1884
MboII	GAAGA	4 cut(s)	116, 1580, 1964, 2048
MfeI	CAATTG	2 cut(s)	1644, 2079
MflI	RGATCY	2 cut(s)	1692, 1747
MhlI	GDGCHC	2 cut(s)	22, 1675
MlsI	TGGCCA	1 cut(s)	789
MluNI	TGGCCA	1 cut(s)	789
MlyI	GAGTC	8 cut(s)	88, 117, 197, 263, 547, 653, 1467, 1972
MmeI	TCCRAC	3 cut(s)	240, 627, 1590
Mox20I	TGGCCA	1 cut(s)	789
MroXI	GAANNNNTTC	2 cut(s)	443, 1150
MscI	TGGCCA	1 cut(s)	789
MseI	TTAA	5 cut(s)	30, 356, 933, 1266, 1857
MslI	CAYNNNNRTG	2 cut(s)	980, 1701
Msp20I	TGGCCA	1 cut(s)	789
MspA1I	CMGCKG	1 cut(s)	348
MspCI	CTTAAG	1 cut(s)	29
MspI	CCGG	4 cut(s)	531, 610, 845, 1074
MspR9I	CCNGG	8 cut(s)	200, 413, 611, 623, 1190, 1557, 1653, 2109
MunI	CAATTG	2 cut(s)	1644, 2079
Mva1269I	GAATGC	2 cut(s)	460, 1066
MvaI	CCWGG	7 cut(s)	200, 413, 623, 1190, 1557, 1653, 2109
MvnI	CGCG	4 cut(s)	593, 708, 2142, 2144
MwoI	GCNNNNNNNGC	5 cut(s)	683, 986, 1103, 1178, 1771
NciI	CCSGG	1 cut(s)	611
NdeI	CATATG	2 cut(s)	52, 1753
NdeII	GATC	9 cut(s)	99, 762, 1016, 1128, 1585, 1692, 1747, 1810, 1884
NlaIV	GGNNCC	1 cut(s)	1449
NmuCI	GTSAC	2 cut(s)	1705, 1923
NsbI	TGCGCA	1 cut(s)	780
NspI	RCATGY	4 cut(s)	12, 1185, 1488, 1826
PaeI	GCATGC	2 cut(s)	1185, 1488
PaqCI	CACCTGC	1 cut(s)	991
PceI	AGGCCT	1 cut(s)	1500
PciI	ACATGT	1 cut(s)	1822
PciSI	GCTCTTC	1 cut(s)	1947
PcsI	WCGNNNNNNNCGW	2 cut(s)	749, 758
PctI	GAATGC	2 cut(s)	460, 1066
PdmI	GAANNNNTTC	2 cut(s)	443, 1150
PfeI	GAWTC	4 cut(s)	248, 304, 1151, 2009
PflFI	GACNNNGTC	1 cut(s)	962
PflMI	CCANNNNNTGG	1 cut(s)	796
PfoI	TCCNGGA	1 cut(s)	2107
PkrI	GCNGC	9 cut(s)	350, 380, 581, 584, 592, 608, 1434, 1726, 2164
PleI	GAGTC	8 cut(s)	88, 116, 197, 262, 546, 652, 1467, 1971
PpsI	GAGTC	8 cut(s)	88, 116, 197, 262, 546, 652, 1467, 1971
PscI	ACATGT	1 cut(s)	1822
PsiI	TTATAA	1 cut(s)	1631
Psp1406I	AACGTT	1 cut(s)	38
Psp6I	CCWGG	7 cut(s)	198, 411, 621, 1188, 1555, 1651, 2107
PspFI	CCCAGC	1 cut(s)	1439
PspGI	CCWGG	7 cut(s)	198, 411, 621, 1188, 1555, 1651, 2107
PspN4I	GGNNCC	1 cut(s)	1449
PspPI	GGNCC	2 cut(s)	604, 1861
PstI	CTGCAG	2 cut(s)	380, 1729
PsuI	RGATCY	2 cut(s)	1692, 1747
PsyI	GACNNNGTC	1 cut(s)	962
RsaI	GTAC	7 cut(s)	330, 395, 1449, 1506, 1657, 1833, 2101
RsaNI	GTAC	7 cut(s)	329, 394, 1448, 1505, 1656, 1832, 2100
RseI	CAYNNNNRTG	2 cut(s)	980, 1701
SapI	GCTCTTC	1 cut(s)	1947
SaqAI	TTAA	5 cut(s)	30, 356, 933, 1266, 1857
SatI	GCNGC	9 cut(s)	349, 379, 580, 583, 591, 607, 1433, 1725, 2163
Sau3AI	GATC	9 cut(s)	99, 762, 1016, 1128, 1585, 1692, 1747, 1810, 1884
Sau96I	GGNCC	2 cut(s)	604, 1861
ScaI	AGTACT	1 cut(s)	1833
SchI	GAGTC	8 cut(s)	88, 117, 197, 263, 547, 653, 1467, 1972
ScrFI	CCNGG	8 cut(s)	200, 413, 611, 623, 1190, 1557, 1653, 2109
SduI	GDGCHC	2 cut(s)	22, 1675
SexAI	ACCWGGT	1 cut(s)	1651
SfaNI	GCATC	4 cut(s)	487, 510, 1629, 2203
SfcI	CTRYAG	3 cut(s)	376, 1107, 1725
SmiMI	CAYNNNNRTG	2 cut(s)	980, 1701
SmlI	CTYRAG	2 cut(s)	29, 1958
SmoI	CTYRAG	2 cut(s)	29, 1958
SphI	GCATGC	2 cut(s)	1185, 1488
SseBI	AGGCCT	1 cut(s)	1500
SsiI	CCGC	8 cut(s)	129, 348, 409, 579, 582, 591, 607, 1531
SspMI	CTAG	4 cut(s)	711, 1134, 1208, 1967
StuI	AGGCCT	1 cut(s)	1500
StyD4I	CCNGG	8 cut(s)	198, 411, 609, 621, 1188, 1555, 1651, 2107
StyI	CCWWGG	2 cut(s)	1864, 1931
TaaI	ACNGT	3 cut(s)	668, 1091, 1779
TaiI	ACGT	3 cut(s)	41, 914, 1600
TaqI	TCGA	5 cut(s)	276, 420, 631, 761, 1396
TatI	WGTACW	4 cut(s)	328, 1504, 1831, 2099
TauI	GCSGC	5 cut(s)	351, 582, 585, 593, 609
TfiI	GAWTC	4 cut(s)	248, 304, 1151, 2009
Tru1I	TTAA	5 cut(s)	30, 356, 933, 1266, 1857
Tru9I	TTAA	5 cut(s)	30, 356, 933, 1266, 1857
TscAI	CASTG	2 cut(s)	436, 797
TseFI	GTSAC	2 cut(s)	1705, 1923
TseI	GCWGC	4 cut(s)	378, 1432, 1724, 2162
Tsp45I	GTSAC	2 cut(s)	1705, 1923
TspDTI	ATGAA	8 cut(s)	390, 438, 605, 908, 1674, 1898, 1965, 2049
TspGWI	ACGGA	2 cut(s)	61, 2002
TspRI	CASTG	2 cut(s)	436, 797
Tth111I	GACNNNGTC	1 cut(s)	962
Van91I	CCANNNNNTGG	1 cut(s)	796
Vha464I	CTTAAG	1 cut(s)	29
XapI	RAATTY	3 cut(s)	59, 134, 425
XbaI	TCTAGA	2 cut(s)	1133, 1966
XceI	RCATGY	4 cut(s)	12, 1185, 1488, 1826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2237
XmiI	GTMKAC	1 cut(s)	881
XmnI	GAANNNNTTC	2 cut(s)	443, 1150
XspI	CTAG	4 cut(s)	711, 1134, 1208, 1967
ZraI	GACGTC	1 cut(s)	912
ZrmI	AGTACT	1 cut(s)	1833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.