pycom09g09050

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0009998
Physical Location & Seq
Reverse (-)
7167239 .. 7170988
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1524 bp
ATGTGTGTTTTATTACTACACCCAAATGGTGGGGGAGATAGACAAAGCTCTTGTCCAAGATACCAAAAAGTAGTGATTCCACAAGAGAAGCATCCCCATCCCCATCCACCACAAATCCTCTCTCTTTCCATGGATCTCACAAGCCCCAGATGTTTTCAACCTCCATCTTTTATCTCATCCAGTGGGGAACTGCCATTGGAGAGCAACCCAAGCTTCTATGGAAAAACCACAAAGGACCCATTTGCAGACACATTTCCAGACCCTCTCTGCAAGCTCAACCTCAGGGAAACCTCTGAGTTTGTCAAGTCACTCCCAGTCCCAAGCAATGCCACATCAGCACAGAGGAGGGACGGAGGAGTGAACTCTATGACACAGAGGAGAGCAGCAGAAGCTCCTCCCAGTCCTGGAAGGCCAGTTTTCAGCTTCTCAGTTGGCAACTTTTCCAGAAAGAGCTTTCCTTCAAAGTGGGATGATGCTGAAAAGTGGCTCATAAGCACTTCCTGCCATGACTCTCCTGCTCACACCACCAAGCCGCAATCAGATTCCACAAAGATTTTTAATCCAAAACAATGTGAGGTTTTTGCTGAAAGATCAAGGGTCACAGAGGAAAAGGTCTCAAAGGTGGTCTCAAGCTTTCAAAGATGTGTTTCTTTGAACAATTATCAATCTACCAGAGCTTTCAATGGGGTCTCAACATCAGCTGATGTGCTTCTAAAAGATAAGTTTGTCGATGACATAGAACCAATTTTACCCAATTCCAGGTGCTTAGAGCCAACTAAAGAGGGCTTTCTATTCAAAAACTCAGCCTGTGACGCCGCGAAAGATGCAGGCAGCGGCACAGAAGAGGCTCATGATGTACACCATCGAGATGTCGGCACAGAGATGACTCCTCTTGGAAGCTCAACAACTTCAAGGTGCCCCACGCCGTTCAAGTGCTCATCTCCAGCGCGCCACAACACGCCTGCGAACAGGTCAGGGCCTTTGGCACTGGGGCACTCTAGCAGCACCAACAACACCATTGACATTGCCCAGCTGCAGGAGTGCCTTGGGACACAGTACGAATCAGTTACGTCGAACTGGAGCTCAAGGGAAGAGGAGGAAGTGGAAATATCGAAGAGCTTGAGACATTTCGAAACAAGCAATGCGTACGGAGAGAGAATTTCTGAAATTAGAGGTGCTGCATGGGAAGAGGAAGAAAATAACGAATGCTGCCTTAGATATCAAAGAGAAGAAGCCAAAATCCAAGCTTGGGTCAACCTCCAAAGTGCAAAAGCAGAAGCTCAGTCAAGAAAGCTTGAGGTGAAGATACAGAAGATGAGATCGAACCTGGAGGAGAAGCTGATGAAGAGGATGGCAGTAGTTCACAGAAAAGCTGAGGAGTGGAGTGCAACAGCGAGGCAGCAGCACTCTGAACAAATCCACAAGGCCACCAACAATGCAGCACACAAGATGATCACAAATAGGCACAACCCTCATTTTTCTGGCCACATTTCTTGCGGCTGCTTCCCTTGCAATAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

508

Amino Acids

56.53

Weight (kDa)

7.86

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 391 - 488 2.4e-22 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 915
AccB7I CCANNNNNTGG 1 cut(s) 29
AccII CGCG 2 cut(s) 818, 949
AciI CCGC 4 cut(s) 533, 816, 834, 1497
AclWI GGATC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 1483
AcsI RAATTY 1 cut(s) 1158
AcyI GRCGYC 1 cut(s) 813
AfaI GTAC 3 cut(s) 858, 1058, 1148
AfiI CCNNNNNNNGG 5 cut(s) 29, 404, 759, 1036, 1249
AgsI TTSAA 8 cut(s) 158, 462, 638, 655, 682, 796, 912, 931
AjnI CCWGG 3 cut(s) 403, 758, 1326
Alw21I GWGCWC 2 cut(s) 938, 1085
Alw26I GTCTC 4 cut(s) 619, 631, 694, 1117
AlwI GGATC 1 cut(s) 141
AoxI GGCC 4 cut(s) 410, 977, 1425, 1483
ApoI RAATTY 1 cut(s) 1158
ArsI GACNNNNNNTTYG 2 cut(s) 37, 69
AspLEI GCGC 2 cut(s) 949, 951
AspS9I GGNCC 2 cut(s) 235, 977
AsuHPI GGTGA 1 cut(s) 1312
AsuII TTCGAA 1 cut(s) 1131
AvaII GGWCC 1 cut(s) 235
AxyI CCTNAGG 1 cut(s) 281
BaeGI GKGCMC 2 cut(s) 920, 996
BalI TGGCCA 1 cut(s) 1485
BanI GGYRCC 1 cut(s) 915
BanII GRGCYC 1 cut(s) 1085
Bbv12I GWGCWC 2 cut(s) 938, 1085
BbvCI CCTCAGC 1 cut(s) 1374
BccI CCATC 5 cut(s) 105, 111, 172, 870, 1345
BceAI ACGGC 1 cut(s) 910
BciT130I CCWGG 3 cut(s) 405, 760, 1328
BclI TGATCA 1 cut(s) 1452
BcoDI GTCTC 4 cut(s) 619, 631, 694, 1117
BfaI CTAG 1 cut(s) 999
BfmI CTRYAG 1 cut(s) 1034
Bme1390I CCNGG 3 cut(s) 405, 760, 1328
Bme18I GGWCC 1 cut(s) 235
BmgT120I GGNCC 2 cut(s) 235, 977
BmiI GGNNCC 2 cut(s) 237, 917
BmrFI CCNGG 3 cut(s) 405, 760, 1328
BmrI ACTGGG 3 cut(s) 308, 393, 998
BmsI GCATC 3 cut(s) 100, 463, 814
BmuI ACTGGG 3 cut(s) 308, 393, 998
BpmI CTGGAG 3 cut(s) 927, 1099, 1349
Bpu10I CCTNAGC 1 cut(s) 1374
Bpu14I TTCGAA 1 cut(s) 1131
BpuEI CTTGAG 4 cut(s) 613, 1069, 1141, 1316
BsaHI GRCGYC 1 cut(s) 813
BsaI GGTCTC 3 cut(s) 619, 631, 694
BsaJI CCNNGG 2 cut(s) 129, 1045
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 404, 759, 1036, 1249
Bse1I ACTGG 6 cut(s) 180, 314, 399, 413, 993, 1082
Bse21I CCTNAGG 1 cut(s) 281
Bse3DI GCAATG 3 cut(s) 331, 1023, 1147
BseBI CCWGG 3 cut(s) 405, 760, 1328
BseDI CCNNGG 2 cut(s) 129, 1045
BseGI GGATG 6 cut(s) 91, 97, 103, 176, 475, 1356
BseLI CCNNNNNNNGG 5 cut(s) 29, 404, 759, 1036, 1249
BseMI GCAATG 3 cut(s) 331, 1023, 1147
BseMII CTCAG 6 cut(s) 285, 295, 441, 816, 1295, 1365
BseNI ACTGG 6 cut(s) 180, 314, 399, 413, 993, 1082
BsePI GCGCGC 1 cut(s) 947
BseRI GAGGAG 8 cut(s) 358, 369, 384, 391, 879, 1109, 1346, 1391
BseSI GKGCMC 2 cut(s) 920, 996
BseYI CCCAGC 1 cut(s) 1029
Bsh1236I CGCG 2 cut(s) 818, 949
BshFI GGCC 4 cut(s) 412, 979, 1427, 1485
BshNI GGYRCC 1 cut(s) 915
BsiHKAI GWGCWC 2 cut(s) 938, 1085
BsiWI CGTACG 1 cut(s) 1146
BslFI GGGAC 3 cut(s) 302, 362, 1063
BslI CCNNNNNNNGG 5 cut(s) 29, 404, 759, 1036, 1249
BsmAI GTCTC 4 cut(s) 619, 631, 694, 1117
BsmFI GGGAC 3 cut(s) 302, 362, 1063
BsmI GAATGC 1 cut(s) 1211
BsnI GGCC 4 cut(s) 412, 979, 1427, 1485
Bso31I GGTCTC 3 cut(s) 619, 631, 694
Bsp119I TTCGAA 1 cut(s) 1131
Bsp1286I GDGCHC 4 cut(s) 920, 938, 996, 1085
Bsp1407I TGTACA 1 cut(s) 856
Bsp143I GATC 4 cut(s) 133, 590, 1319, 1452
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 4 cut(s) 533, 816, 834, 1497
BspANI GGCC 4 cut(s) 412, 979, 1427, 1485
BspCNI CTCAG 6 cut(s) 286, 294, 440, 815, 1294, 1366
BspFNI CGCG 2 cut(s) 818, 949
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 2 cut(s) 237, 917
BspMAI CTGCAG 1 cut(s) 1038
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 1109
BspT104I TTCGAA 1 cut(s) 1131
BspT107I GGYRCC 1 cut(s) 915
BspTNI GGTCTC 3 cut(s) 619, 631, 694
BsrDI GCAATG 3 cut(s) 331, 1023, 1147
BsrGI TGTACA 1 cut(s) 856
BsrI ACTGG 6 cut(s) 180, 314, 399, 413, 993, 1082
BssECI CCNNGG 2 cut(s) 129, 1045
BssHII GCGCGC 1 cut(s) 947
BssMI GATC 4 cut(s) 133, 590, 1319, 1452
BssNI GRCGYC 1 cut(s) 813
BssT1I CCWWGG 2 cut(s) 129, 1045
Bst2UI CCWGG 3 cut(s) 405, 760, 1328
Bst4CI ACNGT 1 cut(s) 1056
Bst6I CTCTTC 5 cut(s) 837, 1086, 1109, 1182, 1340
BstACI GRCGYC 1 cut(s) 813
BstAPI GCANNNNNTGC 1 cut(s) 501
BstAUI TGTACA 1 cut(s) 856
BstBI TTCGAA 1 cut(s) 1131
BstC8I GCNNGC 4 cut(s) 272, 829, 949, 963
BstDEI CTNAG 8 cut(s) 281, 294, 427, 766, 802, 1214, 1281, 1374
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 6 cut(s) 91, 97, 103, 176, 475, 1356
BstFNI CGCG 2 cut(s) 818, 949
BstHHI GCGC 2 cut(s) 949, 951
BstKTI GATC 4 cut(s) 136, 593, 1322, 1455
BstMAI GTCTC 4 cut(s) 619, 631, 694, 1117
BstMBI GATC 4 cut(s) 133, 590, 1319, 1452
BstMWI GCNNNNNNNGC 7 cut(s) 210, 335, 389, 501, 812, 824, 1509
BstNI CCWGG 3 cut(s) 405, 760, 1328
BstSCI CCNGG 3 cut(s) 403, 758, 1326
BstSFI CTRYAG 1 cut(s) 1034
BstSLI GKGCMC 2 cut(s) 920, 996
BstUI CGCG 2 cut(s) 818, 949
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 281
BsuRI GGCC 4 cut(s) 412, 979, 1427, 1485
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 6 cut(s) 91, 97, 103, 176, 475, 1356
BtsIMutI CAGTG 2 cut(s) 187, 986
Cac8I GCNNGC 4 cut(s) 272, 829, 949, 963
CciI TCATGA 1 cut(s) 850
CfoI GCGC 2 cut(s) 949, 951
Cfr13I GGNCC 2 cut(s) 235, 977
CseI GACGC 1 cut(s) 821
Csp6I GTAC 3 cut(s) 857, 1057, 1147
CspCI CAANNNNNGTGG 2 cut(s) 1475, 1510
CviAII CATG 4 cut(s) 130, 506, 851, 1182
CviQI GTAC 3 cut(s) 857, 1057, 1147
DdeI CTNAG 8 cut(s) 281, 294, 427, 766, 802, 1214, 1281, 1374
DpnI GATC 4 cut(s) 135, 592, 1321, 1454
DpnII GATC 4 cut(s) 133, 590, 1319, 1452
EaeI YGGCCR 1 cut(s) 1483
Eam1104I CTCTTC 5 cut(s) 837, 1086, 1109, 1182, 1340
EarI CTCTTC 5 cut(s) 837, 1086, 1109, 1182, 1340
Ecl136II GAGCTC 1 cut(s) 1083
Eco130I CCWWGG 2 cut(s) 129, 1045
Eco24I GRGCYC 1 cut(s) 1085
Eco31I GGTCTC 3 cut(s) 619, 631, 694
Eco32I GATATC 1 cut(s) 1220
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 1083
Eco81I CCTNAGG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 1083
EcoO109I RGGNCCY 2 cut(s) 235, 977
EcoRII CCWGG 3 cut(s) 403, 758, 1326
EcoRV GATATC 1 cut(s) 1220
EcoT14I CCWWGG 2 cut(s) 129, 1045
EcoT38I GRGCYC 1 cut(s) 1085
ErhI CCWWGG 2 cut(s) 129, 1045
FaeI CATG 4 cut(s) 133, 509, 854, 1185
FaiI YATR 8 cut(s) 131, 219, 368, 491, 507, 737, 852, 1183
FaqI GGGAC 3 cut(s) 302, 362, 1063
FatI CATG 4 cut(s) 129, 505, 850, 1181
FbaI TGATCA 1 cut(s) 1452
FokI GGATG 6 cut(s) 78, 84, 90, 163, 482, 1363
FriOI GRGCYC 1 cut(s) 1085
FspBI CTAG 1 cut(s) 999
GlaI GCGC 2 cut(s) 948, 950
GsaI CCCAGC 1 cut(s) 1033
GsuI CTGGAG 3 cut(s) 927, 1099, 1349
HaeIII GGCC 4 cut(s) 412, 979, 1427, 1485
HgaI GACGC 1 cut(s) 821
HhaI GCGC 2 cut(s) 949, 951
Hin1I GRCGYC 1 cut(s) 813
Hin1II CATG 4 cut(s) 133, 509, 854, 1185
Hin6I GCGC 2 cut(s) 947, 949
HinP1I GCGC 2 cut(s) 947, 949
HincII GTYRAC 1 cut(s) 1255
HindII GTYRAC 1 cut(s) 1255
HindIII AAGCTT 4 cut(s) 211, 631, 1245, 1292
HinfI GANTC 5 cut(s) 76, 509, 542, 886, 1061
HphI GGTGA 1 cut(s) 1312
Hpy166II GTNNAC 4 cut(s) 361, 859, 1255, 1363
Hpy188I TCNGA 4 cut(s) 295, 541, 1165, 1411
Hpy188III TCNNGA 5 cut(s) 257, 444, 851, 866, 1287
Hpy8I GTNNAC 4 cut(s) 361, 859, 1255, 1363
Hpy99I CGWCG 1 cut(s) 1075
HpyAV CCTTC 2 cut(s) 402, 468
HpyCH4III ACNGT 1 cut(s) 1056
HpyCH4IV ACGT 1 cut(s) 1070
HpyCH4V TGCA 9 cut(s) 245, 270, 827, 1036, 1181, 1268, 1388, 1439, 1512
HpyF10VI GCNNNNNNNGC 7 cut(s) 210, 335, 389, 501, 812, 824, 1509
HpyF3I CTNAG 8 cut(s) 281, 294, 427, 766, 802, 1214, 1281, 1374
HpySE526I ACGT 1 cut(s) 1070
Hsp92I GRCGYC 1 cut(s) 813
Hsp92II CATG 4 cut(s) 133, 509, 854, 1185
HspAI GCGC 2 cut(s) 947, 949
Ksp22I TGATCA 1 cut(s) 1452
Kzo9I GATC 4 cut(s) 133, 590, 1319, 1452
LguI GCTCTTC 1 cut(s) 1109
LmnI GCTCC 2 cut(s) 397, 1080
LweI GCATC 3 cut(s) 100, 463, 814
MaeI CTAG 1 cut(s) 999
MaeII ACGT 1 cut(s) 1070
MaeIII GTNAC 4 cut(s) 306, 598, 809, 1066
MalI GATC 4 cut(s) 135, 592, 1321, 1454
MboI GATC 4 cut(s) 133, 590, 1319, 1452
MboII GAAGA 9 cut(s) 854, 1103, 1126, 1199, 1205, 1241, 1315, 1324, 1357
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 4 cut(s) 920, 938, 996, 1085
MlsI TGGCCA 1 cut(s) 1485
MluCI AATT 5 cut(s) 658, 744, 754, 1158, 1167
MluNI TGGCCA 1 cut(s) 1485
MlyI GAGTC 2 cut(s) 503, 880
Mox20I TGGCCA 1 cut(s) 1485
MscI TGGCCA 1 cut(s) 1485
MseI TTAA 2 cut(s) 558, 1522
MslI CAYNNNNRTG 3 cut(s) 24, 867, 881
Msp20I TGGCCA 1 cut(s) 1485
MspA1I CMGCKG 3 cut(s) 701, 834, 1033
MspR9I CCNGG 3 cut(s) 405, 760, 1328
Mva1269I GAATGC 1 cut(s) 1211
MvaI CCWGG 3 cut(s) 405, 760, 1328
MvnI CGCG 2 cut(s) 818, 949
MwoI GCNNNNNNNGC 7 cut(s) 210, 335, 389, 501, 812, 824, 1509
NcoI CCATGG 1 cut(s) 129
NdeII GATC 4 cut(s) 133, 590, 1319, 1452
NlaIII CATG 4 cut(s) 133, 509, 854, 1185
NlaIV GGNNCC 2 cut(s) 237, 917
NmuCI GTSAC 3 cut(s) 306, 598, 809
NspV TTCGAA 1 cut(s) 1131
PagI TCATGA 1 cut(s) 850
PauI GCGCGC 1 cut(s) 947
PciSI GCTCTTC 1 cut(s) 1109
PctI GAATGC 1 cut(s) 1211
PfeI GAWTC 3 cut(s) 76, 542, 1061
Pfl23II CGTACG 1 cut(s) 1146
PflMI CCANNNNNTGG 1 cut(s) 29
PfoI TCCNGGA 1 cut(s) 403
PleI GAGTC 2 cut(s) 503, 880
PpsI GAGTC 2 cut(s) 503, 880
PpuMI RGGWCCY 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 1085
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 3 cut(s) 403, 758, 1326
PspFI CCCAGC 1 cut(s) 1029
PspGI CCWGG 3 cut(s) 403, 758, 1326
PspLI CGTACG 1 cut(s) 1146
PspN4I GGNNCC 2 cut(s) 237, 917
PspPI GGNCC 2 cut(s) 235, 977
PspPPI RGGWCCY 1 cut(s) 235
PsrI GAACNNNNNNTAC 2 cut(s) 732, 764
PstI CTGCAG 1 cut(s) 1038
PsuI RGATCY 1 cut(s) 133
PteI GCGCGC 1 cut(s) 947
PvuII CAGCTG 2 cut(s) 701, 1033
RsaI GTAC 3 cut(s) 858, 1058, 1148
RsaNI GTAC 3 cut(s) 857, 1057, 1147
RseI CAYNNNNRTG 3 cut(s) 24, 867, 881
SacI GAGCTC 1 cut(s) 1085
SapI GCTCTTC 1 cut(s) 1109
SaqAI TTAA 2 cut(s) 558, 1522
Sau3AI GATC 4 cut(s) 133, 590, 1319, 1452
Sau96I GGNCC 2 cut(s) 235, 977
SchI GAGTC 2 cut(s) 503, 880
ScrFI CCNGG 3 cut(s) 405, 760, 1328
SduI GDGCHC 4 cut(s) 920, 938, 996, 1085
SfaNI GCATC 3 cut(s) 100, 463, 814
SfcI CTRYAG 1 cut(s) 1034
SfuI TTCGAA 1 cut(s) 1131
SinI GGWCC 1 cut(s) 235
SmiMI CAYNNNNRTG 3 cut(s) 24, 867, 881
SmlI CTYRAG 4 cut(s) 628, 1084, 1120, 1295
SmoI CTYRAG 4 cut(s) 628, 1084, 1120, 1295
Sse9I AATT 5 cut(s) 658, 744, 754, 1158, 1167
SsiI CCGC 4 cut(s) 533, 816, 834, 1497
SspMI CTAG 1 cut(s) 999
SstI GAGCTC 1 cut(s) 1085
StyD4I CCNGG 3 cut(s) 403, 758, 1326
StyI CCWWGG 2 cut(s) 129, 1045
TaaI ACNGT 1 cut(s) 1056
TaiI ACGT 1 cut(s) 1073
TaqI TCGA 6 cut(s) 729, 865, 1073, 1112, 1131, 1322
TasI AATT 5 cut(s) 658, 744, 754, 1158, 1167
TatI WGTACW 1 cut(s) 856
TauI GCSGC 4 cut(s) 535, 818, 837, 1500
TfiI GAWTC 3 cut(s) 76, 542, 1061
Tru1I TTAA 2 cut(s) 558, 1522
Tru9I TTAA 2 cut(s) 558, 1522
TscAI CASTG 2 cut(s) 187, 993
TseFI GTSAC 3 cut(s) 306, 598, 809
Tsp45I GTSAC 3 cut(s) 306, 598, 809
TspDTI ATGAA 1 cut(s) 1358
TspGWI ACGGA 2 cut(s) 366, 1164
TspRI CASTG 2 cut(s) 187, 993
Van91I CCANNNNNTGG 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 1 cut(s) 1158
XspI CTAG 1 cut(s) 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.