Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0013399

Physical Location & Seq

Genomic Coordinates Forward (+)

9956219 .. 9958476

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGAAACCCCGCCACCACCTGAGACTCCTCCGCCTCACCAAACCCACGCCCTCAACCACCACGTGCCGCCACTATGCCACAAAGTACACTGCCAAAATAACCTCAACCTCCCCAACCGGCCTTTCGGTCTCGGCCGAGGTAACCCCGCCGCCGCCCCTCCCCACCGACATCCGCGGCTACGCTCTCCCGCGGCGCGACCTCGTCTGTAAAGCCACCCAAATCCTCCTCGGCCGCCAATCCCCATCCGCCATGTTATCAGACCCCTTCTCCGACCTCTCCGACTACCTCACCTCCCTCTCCCTCCACATCACCCCGTCCGAAGCCTCCGAAATCCTGAAATCGGTAACCTGCCCCGACCTCGCCGTGAAATTCTTCCGATTTTGCCCCTCGCTCTCATCTAATTTCCACCACGACGCCTTCACCTGCAATCGAATCCTCCTCATCCTCTCCAAGTCTACCTCCCCCGCCCGGTTCGACCTAGTCCGGTCGATCCTCCGCGACATGGACCGCTCCAGCATACGTGGCAACATCTCCACCGTCAACATCCTTGTCGGCCTGTTCGGCAGCACCGAAGACTTGGAAACCTGTATTGGATTGGTGAAGAAATGGAATCTCAACATGAACAGCTACACTTACAAGTGCTTGCTTCAGGCCTTCCTGCGCTCTCGCGATTCCGGCAAAGCTTTCGATACTTACATCGACATGCGGCGGCGGGGTTACAAGCTCGACATTTTTGCCTACAACATGCTGATGGATGCATTGGCGAAAGACGAAAAGGTTGAGGATGCACGCAAGGTGTTTGATGATATGAAGAAGAAGCATTGCGAGCCGGATGAGTTTACGTACACGATTATGATCAGAATGGTTGGGAAATTGGGTAAGGGCGATGAGTGTCTCGGGTTGTTTCAGGAGATGGTGAACAAGGGTTGCGCTCCGAATATGATGTTTTATAATACTATGATTCAGGCTCTTGCTCGGAGCAAGATGGTTGACGAGGCCATCATTGTGTTCTCGAAAATGGTACAGAACAATTGCCGGCCTAATGAATTTACGTACAGTGTGGTTTTGAATCTTTTGGTTGCAGAAGGGCAGTTGGGTAGGTTTGATGAGGTGGTGGGGATGTCGAAGAAGTACATGACGAAGTCGATATATGCATATCTTGTGAGGACATTGAGTAAATTGGGTCATGCCGGGGAAGCTCACAGGTTGTTCTGCAACATGTGGAGCTTCCATGACATGGGGGATCGGGATGCATATACTTCAATGTTGGAGAGTTTGTGCAGTGCAGGTAAAACTGCAGAGGCGGTTGACATGCTAAGTAACATTCATGAGAAAGGGATAACTACTGATACTATCATGTACAACACAGTTTTGGCAGCTCTTGGAAAGTTGAAGCAGATACCCCATCTTCACGAACTGTACGAAAAGATGAAACTTGATGGGCCTGAACCGGACATATTTACCTACAACATTATGATTTCGAGCTTTGGTAGAGCTGGGAAGGTTCATGAGGCTGTGACGATATTCGAACATCTCGAGAATAGTGATTGTAAACCGGATATTATCTCTTACAATTCGTTGATCAATTGCCTTGGGAAAAATGGTGATGTGGATGAAGCCCACATGAGGTTTAAGGAGATGCAAGAGAAGGGTTTTAGCCCTGATGTTGTCACCTACAGCACTCTGATCGAGTGCTTTGGCAAGACGGATAGGGTTGAAATGGCATGCAGGCTGTTCGACGACATGCTTGCTCAAGGCTGCTATCCGAATATAGTGACATACAACATCTTGCTTGATTGTCTTGAGAGGTGTGGGAGGACTGCTGAGGCAGTGGATCTATATGCGAAACTTAAGCAGCAAGGGTTGTCACCGGATTGGATTACATACGCAGTGCTTGAACGGTTGCAGAGCGGTTCACATAGGAGAGTTAGGTTTCCAGTTCCTCCCAAGGCCGAAGCATGCGGCTGCTGCTGCGACTACTCAAGAAACTTGCTTACCACGGAGCTATCACGACCAGGACCCGTTTCGTTCGCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

680

Amino Acids

76.58

Weight (kDa)

8.06

Isoelectric Point (pI)

44.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	199 - 304	2.5e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	208 - 256	2.7e-10	PPR repeat family
PPR_long	PF17177	212 - 373	1.7e-18	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	234 - 291	2.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	238 - 271	2.8e-06	PPR repeat
PPR_2	PF13041	243 - 288	1.4e-17	PPR repeat family
PPR	PF01535	246 - 275	3e-06	PPR repeat
PPR	PF01535	280 - 310	4.5e-07	PPR repeat
PPR_3	PF13812	301 - 360	6.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	308 - 341	1.5e-06	PPR repeat
PPR_2	PF13041	312 - 359	5.1e-14	PPR repeat family
PPR	PF01535	317 - 345	2.2e-06	PPR repeat
TPR_24	PF23276	419 - 511	8.1e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	450 - 496	1.8e-10	PPR repeat family
PPR_long	PF17177	473 - 634	8.1e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	473 - 534	2.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	481 - 511	1.5e-09	PPR repeat
PPR_2	PF13041	484 - 531	8.2e-13	PPR repeat family
PPR	PF01535	487 - 517	3.2e-06	PPR repeat
TPR_24	PF23276	497 - 616	2.2e-09	Fungal tetratrico peptide repeats
PPR_1	PF12854	516 - 547	1.7e-09	PPR repeat
PPR_2	PF13041	519 - 567	3e-17	PPR repeat family
PPR	PF01535	522 - 552	5.8e-09	PPR repeat
PPR_3	PF13812	544 - 599	3.2e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	550 - 582	4.9e-09	PPR repeat
PPR_2	PF13041	554 - 601	1.6e-16	PPR repeat family
PPR	PF01535	557 - 587	3.3e-06	PPR repeat
PPR_3	PF13812	577 - 632	1.6e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	586 - 613	3.4e-06	PPR repeat
PPR_2	PF13041	589 - 632	2.2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51965
fragaria_vesca	FvH4_6g32590
malus_domestica	MD09G1200200.v1.1
prunus_persica	Prupe.3G056800_v2.0.a1
pyrus_communis	pycom09g11780 pycom15g36760
rosa_chinensis	RchiOBHm_Chr2g0141041
rosa_laevigata	RLG00000019910
rosa_multiflora	Rmu_sc0004769.1_g000016 Rmu_sc0012897.1_g000006
rosa_roxburghii	Rroxscaffold_2G00104260
rosa_rugosa	Rorug02G0366300
rosa_samantha	Rh2AG417700 Rh2BG427600 Rh2CG404000 Rh2DG437100
rosa_wichuraiana	Rw2G034190 Rw2G034250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	3 cut(s)	356, 431, 1277
AccB7I	CCANNNNNTGG	1 cut(s)	1237
AccBSI	CCGCTC	2 cut(s)	510, 1911
AccI	GTMKAC	1 cut(s)	455
AccII	CGCG	6 cut(s)	174, 190, 195, 498, 669, 2033
AclWI	GGATC	3 cut(s)	484, 1251, 1842
AcoI	YGGCCR	2 cut(s)	132, 229
AcsI	RAATTY	2 cut(s)	368, 1046
AcuI	CTGAAG	1 cut(s)	632
AcvI	CACGTG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	414
AdeI	CACNNNGTG	1 cut(s)	63
AfaI	GTAC	7 cut(s)	86, 845, 1023, 1055, 1133, 1361, 1421
AfiI	CCNNNNNNNGG	5 cut(s)	340, 468, 502, 1237, 1626
AflII	CTTAAG	1 cut(s)	1850
AflIII	ACRYGT	1 cut(s)	1218
AgsI	TTSAA	5 cut(s)	1069, 1263, 1393, 1718, 1898
AjnI	CCWGG	1 cut(s)	2014
AjuI	GAANNNNNNNTTGG	4 cut(s)	106, 138, 573, 605
AluBI	AGCT	9 cut(s)	627, 683, 724, 1199, 1227, 1379, 1485, 1496, 2005
AluI	AGCT	9 cut(s)	627, 683, 724, 1199, 1227, 1379, 1485, 1496, 2005
Alw26I	GTCTC	3 cut(s)	16, 133, 899
AlwI	GGATC	3 cut(s)	484, 1251, 1842
Ama87I	CYCGRG	2 cut(s)	896, 1535
AoxI	GGCC	9 cut(s)	118, 132, 229, 553, 651, 996, 1037, 1442, 1950
ApeKI	GCWGC	7 cut(s)	564, 1376, 1758, 1855, 1965, 1968, 1971
ApoI	RAATTY	2 cut(s)	368, 1046
Asp700I	GAANNNNTTC	1 cut(s)	371
AspLEI	GCGC	3 cut(s)	195, 663, 932
AspS9I	GGNCC	3 cut(s)	505, 1442, 2018
AsuC2I	CCSGG	2 cut(s)	469, 1192
AsuHPI	GGTGA	9 cut(s)	28, 280, 301, 412, 610, 928, 1616, 1663, 1860
AsuII	TTCGAA	1 cut(s)	1527
AvaI	CYCGRG	2 cut(s)	896, 1535
AvaII	GGWCC	2 cut(s)	505, 2018
BbrPI	CACGTG	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	579
BbvCI	CCTCAGC	1 cut(s)	1824
BbvI	GCAGC	7 cut(s)	576, 1388, 1745, 1867, 1952, 1955, 1958
BccI	CCATC	7 cut(s)	250, 745, 907, 979, 1007, 1413, 1433
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	2016
BclI	TGATCA	2 cut(s)	855, 1581
BcnI	CCSGG	2 cut(s)	469, 1192
BcoDI	GTCTC	3 cut(s)	16, 133, 899
BfaI	CTAG	1 cut(s)	479
BfmI	CTRYAG	2 cut(s)	1296, 1675
BfrI	CTTAAG	1 cut(s)	1850
BfuAI	ACCTGC	3 cut(s)	356, 431, 1277
BglI	GCCNNNNNGGC	1 cut(s)	561
Bme1390I	CCNGG	3 cut(s)	469, 1192, 2016
Bme18I	GGWCC	2 cut(s)	505, 2018
BmeT110I	CYCGRG	2 cut(s)	896, 1535
BmgT120I	GGNCC	3 cut(s)	505, 1442, 2018
BmiI	GGNNCC	1 cut(s)	2020
BmrFI	CCNGG	3 cut(s)	469, 1192, 2016
BmsI	GCATC	4 cut(s)	745, 775, 1240, 1629
BpiI	GAAGAC	1 cut(s)	579
BpmI	CTGGAG	1 cut(s)	496
Bpu10I	CCTNAGC	1 cut(s)	1824
Bpu14I	TTCGAA	1 cut(s)	1527
BpuEI	CTTGAG	3 cut(s)	1737, 1823, 1966
BpuMI	CCSGG	2 cut(s)	469, 1192
BsaAI	YACGTR	4 cut(s)	63, 521, 843, 1053
BsaBI	GATNNNNATC	1 cut(s)	854
BsaHI	GRCGYC	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	8 cut(s)	135, 172, 188, 226, 1191, 1591, 1947, 1998
BsaWI	WCCGGW	4 cut(s)	483, 1450, 1555, 1870
BsaXI	ACNNNNNCTCC	6 cut(s)	251, 275, 281, 305, 1262, 1292
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 468, 502, 1237, 1626
Bse118I	RCCGGY	2 cut(s)	116, 1035
Bse1I	ACTGG	1 cut(s)	1937
Bse3DI	GCAATG	1 cut(s)	820
Bse8I	GATNNNNATC	1 cut(s)	854
BseBI	CCWGG	1 cut(s)	2016
BseDI	CCNNGG	8 cut(s)	135, 172, 188, 226, 1191, 1591, 1947, 1998
BseJI	GATNNNNATC	1 cut(s)	854
BseLI	CCNNNNNNNGG	5 cut(s)	340, 468, 502, 1237, 1626
BseMI	GCAATG	1 cut(s)	820
BseMII	CTCAG	2 cut(s)	11, 1815
BseNI	ACTGG	1 cut(s)	1937
BseRI	GAGGAG	3 cut(s)	17, 215, 428
BseX3I	CGGCCG	2 cut(s)	132, 229
BseXI	GCAGC	7 cut(s)	576, 1388, 1745, 1867, 1952, 1955, 1958
BseYI	CCCAGC	1 cut(s)	1496
BsgI	GTGCAG	2 cut(s)	1300, 1305
Bsh1236I	CGCG	6 cut(s)	174, 190, 195, 498, 669, 2033
Bsh1285I	CGRYCG	3 cut(s)	135, 232, 488
BshFI	GGCC	9 cut(s)	120, 134, 231, 555, 653, 998, 1039, 1444, 1952
BsiEI	CGRYCG	3 cut(s)	135, 232, 488
BsiHKCI	CYCGRG	2 cut(s)	896, 1535
BslI	CCNNNNNNNGG	5 cut(s)	340, 468, 502, 1237, 1626
BsmAI	GTCTC	3 cut(s)	16, 133, 899
BsnI	GGCC	9 cut(s)	120, 134, 231, 555, 653, 998, 1039, 1444, 1952
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	2 cut(s)	896, 1535
Bsp119I	TTCGAA	1 cut(s)	1527
Bsp1407I	TGTACA	1 cut(s)	1359
Bsp143I	GATC	6 cut(s)	489, 855, 1243, 1581, 1686, 1834
Bsp68I	TCGCGA	1 cut(s)	669
BspANI	GGCC	9 cut(s)	120, 134, 231, 555, 653, 998, 1039, 1444, 1952
BspCNI	CTCAG	2 cut(s)	12, 1816
BspFNI	CGCG	6 cut(s)	174, 190, 195, 498, 669, 2033
BspHI	TCATGA	2 cut(s)	1327, 1507
BspLI	GGNNCC	1 cut(s)	2020
BspMAI	CTGCAG	1 cut(s)	1300
BspMI	ACCTGC	3 cut(s)	356, 431, 1277
BspPI	GGATC	3 cut(s)	484, 1251, 1842
BspT104I	TTCGAA	1 cut(s)	1527
BspTI	CTTAAG	1 cut(s)	1850
BspTNI	GGTCTC	1 cut(s)	133
BsrBI	CCGCTC	2 cut(s)	510, 1911
BsrDI	GCAATG	1 cut(s)	820
BsrFI	RCCGGY	2 cut(s)	116, 1035
BsrGI	TGTACA	1 cut(s)	1359
BsrI	ACTGG	1 cut(s)	1937
BssAI	RCCGGY	2 cut(s)	116, 1035
BssECI	CCNNGG	8 cut(s)	135, 172, 188, 226, 1191, 1591, 1947, 1998
BssMI	GATC	6 cut(s)	489, 855, 1243, 1581, 1686, 1834
BssNI	GRCGYC	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	1591, 1947
Bst2UI	CCWGG	1 cut(s)	2016
Bst4CI	ACNGT	5 cut(s)	538, 1058, 1369, 1419, 1902
BstACI	GRCGYC	1 cut(s)	414
BstAFI	CTTAAG	1 cut(s)	1850
BstAUI	TGTACA	1 cut(s)	1359
BstBAI	YACGTR	4 cut(s)	63, 521, 843, 1053
BstBI	TTCGAA	1 cut(s)	1527
BstC8I	GCNNGC	8 cut(s)	644, 790, 827, 1037, 1726, 1730, 1749, 1960
BstDEI	CTNAG	3 cut(s)	20, 1316, 1824
BstDSI	CCRYGG	3 cut(s)	172, 188, 1998
BstEII	GGTNACC	2 cut(s)	139, 343
BstFNI	CGCG	6 cut(s)	174, 190, 195, 498, 669, 2033
BstHHI	GCGC	3 cut(s)	195, 663, 932
BstKTI	GATC	6 cut(s)	492, 858, 1246, 1584, 1689, 1837
BstMAI	GTCTC	3 cut(s)	16, 133, 899
BstMBI	GATC	6 cut(s)	489, 855, 1243, 1581, 1686, 1834
BstMCI	CGRYCG	3 cut(s)	135, 232, 488
BstMWI	GCNNNNNNNGC	7 cut(s)	522, 561, 675, 826, 1196, 1968, 1971
BstNI	CCWGG	1 cut(s)	2016
BstNSI	RCATGY	7 cut(s)	706, 748, 1222, 1315, 1728, 1747, 1962
BstPI	GGTNACC	2 cut(s)	139, 343
BstSCI	CCNGG	3 cut(s)	467, 1190, 2014
BstSFI	CTRYAG	2 cut(s)	1296, 1675
BstSNI	TACGTA	2 cut(s)	843, 1053
BstUI	CGCG	6 cut(s)	174, 190, 195, 498, 669, 2033
BstV1I	GCAGC	7 cut(s)	576, 1388, 1745, 1867, 1952, 1955, 1958
BstV2I	GAAGAC	1 cut(s)	579
BstX2I	RGATCY	1 cut(s)	1834
BstYI	RGATCY	1 cut(s)	1834
BstZI	CGGCCG	2 cut(s)	132, 229
BsuRI	GGCC	9 cut(s)	120, 134, 231, 555, 653, 998, 1039, 1444, 1952
BtgI	CCRYGG	3 cut(s)	172, 188, 1998
BtgZI	GCGATG	1 cut(s)	900
BtsI	GCAGTG	4 cut(s)	87, 1288, 1836, 1896
BtsIMutI	CAGTG	5 cut(s)	87, 1063, 1288, 1836, 1896
BtuMI	TCGCGA	1 cut(s)	669
BveI	ACCTGC	3 cut(s)	356, 431, 1277
Cac8I	GCNNGC	8 cut(s)	644, 790, 827, 1037, 1726, 1730, 1749, 1960
CciI	TCATGA	2 cut(s)	1327, 1507
CfoI	GCGC	3 cut(s)	195, 663, 932
Cfr10I	RCCGGY	2 cut(s)	116, 1035
Cfr13I	GGNCC	3 cut(s)	505, 1442, 2018
Cfr42I	CCGCGG	2 cut(s)	175, 191
CseI	GACGC	1 cut(s)	422
Csp6I	GTAC	7 cut(s)	85, 844, 1022, 1054, 1132, 1360, 1420
CviQI	GTAC	7 cut(s)	85, 844, 1022, 1054, 1132, 1360, 1420
DdeI	CTNAG	3 cut(s)	20, 1316, 1824
DpnI	GATC	6 cut(s)	491, 857, 1245, 1583, 1688, 1836
DpnII	GATC	6 cut(s)	489, 855, 1243, 1581, 1686, 1834
DraIII	CACNNNGTG	1 cut(s)	63
EaeI	YGGCCR	2 cut(s)	132, 229
EagI	CGGCCG	2 cut(s)	132, 229
EciI	GGCGGA	2 cut(s)	20, 235
EclXI	CGGCCG	2 cut(s)	132, 229
Eco105I	TACGTA	2 cut(s)	843, 1053
Eco130I	CCWWGG	2 cut(s)	1591, 1947
Eco147I	AGGCCT	1 cut(s)	653
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	2 cut(s)	505, 2018
Eco52I	CGGCCG	2 cut(s)	132, 229
Eco57I	CTGAAG	1 cut(s)	632
Eco72I	CACGTG	1 cut(s)	63
Eco88I	CYCGRG	2 cut(s)	896, 1535
Eco91I	GGTNACC	2 cut(s)	139, 343
EcoO109I	RGGNCCY	1 cut(s)	2018
EcoO65I	GGTNACC	2 cut(s)	139, 343
EcoRII	CCWGG	1 cut(s)	2014
EcoT14I	CCWWGG	2 cut(s)	1591, 1947
EcoT22I	ATGCAT	3 cut(s)	760, 1156, 1255
ErhI	CCWWGG	2 cut(s)	1591, 1947
FauI	CCCGC	5 cut(s)	17, 153, 195, 472, 705
FbaI	TGATCA	2 cut(s)	855, 1581
FblI	GTMKAC	1 cut(s)	455
FspBI	CTAG	1 cut(s)	479
GlaI	GCGC	3 cut(s)	194, 662, 931
GsaI	CCCAGC	1 cut(s)	1500
GsuI	CTGGAG	1 cut(s)	496
HaeIII	GGCC	9 cut(s)	120, 134, 231, 555, 653, 998, 1039, 1444, 1952
HgaI	GACGC	1 cut(s)	422
HhaI	GCGC	3 cut(s)	195, 663, 932
Hin1I	GRCGYC	1 cut(s)	414
Hin6I	GCGC	3 cut(s)	193, 661, 930
HinP1I	GCGC	3 cut(s)	193, 661, 930
HincII	GTYRAC	3 cut(s)	541, 991, 1309
HindII	GTYRAC	3 cut(s)	541, 991, 1309
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	6 cut(s)	24, 432, 610, 671, 961, 1069
HphI	GGTGA	9 cut(s)	28, 280, 301, 412, 610, 928, 1616, 1663, 1860
Hpy99I	CGWCG	2 cut(s)	416, 1742
HpyAV	CCTTC	6 cut(s)	274, 427, 664, 1079, 1495, 1642
HpyCH4III	ACNGT	5 cut(s)	538, 1058, 1369, 1419, 1902
HpyCH4IV	ACGT	4 cut(s)	62, 520, 842, 1052
HpyF10VI	GCNNNNNNNGC	7 cut(s)	522, 561, 675, 826, 1196, 1968, 1971
HpyF3I	CTNAG	3 cut(s)	20, 1316, 1824
HpySE526I	ACGT	4 cut(s)	62, 520, 842, 1052
Hsp92I	GRCGYC	1 cut(s)	414
HspAI	GCGC	3 cut(s)	193, 661, 930
KroI	GCCGGC	1 cut(s)	1035
KroNI	GCCGGC	1 cut(s)	1037
Ksp22I	TGATCA	2 cut(s)	855, 1581
KspI	CCGCGG	2 cut(s)	175, 191
Kzo9I	GATC	6 cut(s)	489, 855, 1243, 1581, 1686, 1834
LmnI	GCTCC	5 cut(s)	515, 937, 978, 1224, 2002
Lsp1109I	GCAGC	7 cut(s)	576, 1388, 1745, 1867, 1952, 1955, 1958
LweI	GCATC	4 cut(s)	745, 775, 1240, 1629
MaeI	CTAG	1 cut(s)	479
MaeII	ACGT	4 cut(s)	62, 520, 842, 1052
MaeIII	GTNAC	8 cut(s)	139, 343, 716, 1319, 1516, 1669, 1774, 1866
MalI	GATC	6 cut(s)	491, 857, 1245, 1583, 1688, 1836
MbiI	CCGCTC	2 cut(s)	510, 1911
MboI	GATC	6 cut(s)	489, 855, 1243, 1581, 1686, 1834
MboII	GAAGA	7 cut(s)	364, 584, 613, 823, 826, 1138, 1400
MfeI	CAATTG	2 cut(s)	1030, 1585
MflI	RGATCY	1 cut(s)	1834
MluCI	AATT	8 cut(s)	368, 400, 872, 1030, 1046, 1178, 1573, 1585
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	3 cut(s)	294, 303, 1248
Mph1103I	ATGCAT	3 cut(s)	760, 1156, 1255
MroNI	GCCGGC	1 cut(s)	1035
MroXI	GAANNNNTTC	1 cut(s)	371
MseI	TTAA	2 cut(s)	1632, 1851
MslI	CAYNNNNRTG	4 cut(s)	701, 749, 851, 1004
MspA1I	CMGCKG	2 cut(s)	174, 190
MspCI	CTTAAG	1 cut(s)	1850
MspR9I	CCNGG	3 cut(s)	469, 1192, 2016
MunI	CAATTG	2 cut(s)	1030, 1585
MvaI	CCWGG	1 cut(s)	2016
MvnI	CGCG	6 cut(s)	174, 190, 195, 498, 669, 2033
MwoI	GCNNNNNNNGC	7 cut(s)	522, 561, 675, 826, 1196, 1968, 1971
NaeI	GCCGGC	1 cut(s)	1037
NciI	CCSGG	2 cut(s)	469, 1192
NdeII	GATC	6 cut(s)	489, 855, 1243, 1581, 1686, 1834
NgoMIV	GCCGGC	1 cut(s)	1035
NlaIV	GGNNCC	1 cut(s)	2020
NmeAIII	GCCGAG	3 cut(s)	110, 160, 207
NmuCI	GTSAC	4 cut(s)	1516, 1669, 1774, 1866
NruI	TCGCGA	1 cut(s)	669
NsiI	ATGCAT	3 cut(s)	760, 1156, 1255
NspI	RCATGY	7 cut(s)	706, 748, 1222, 1315, 1728, 1747, 1962
NspV	TTCGAA	1 cut(s)	1527
PaeI	GCATGC	2 cut(s)	1728, 1962
PaeR7I	CTCGAG	1 cut(s)	1535
PagI	TCATGA	2 cut(s)	1327, 1507
PaqCI	CACCTGC	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	653
PciI	ACATGT	1 cut(s)	1218
PcsI	WCGNNNNNNNCGW	3 cut(s)	567, 1419, 1533
PdiI	GCCGGC	1 cut(s)	1037
PdmI	GAANNNNTTC	1 cut(s)	371
PfeI	GAWTC	5 cut(s)	432, 610, 671, 961, 1069
PflFI	GACNNNGTC	3 cut(s)	200, 479, 1141
PflMI	CCANNNNNTGG	1 cut(s)	1237
PleI	GAGTC	1 cut(s)	18
PmaCI	CACGTG	1 cut(s)	63
PmlI	CACGTG	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	18
Ppu21I	YACGTR	4 cut(s)	63, 521, 843, 1053
PpuMI	RGGWCCY	1 cut(s)	2018
PscI	ACATGT	1 cut(s)	1218
PsiI	TTATAA	1 cut(s)	951
Psp5II	RGGWCCY	1 cut(s)	2018
Psp6I	CCWGG	1 cut(s)	2014
PspCI	CACGTG	1 cut(s)	63
PspEI	GGTNACC	2 cut(s)	139, 343
PspFI	CCCAGC	1 cut(s)	1496
PspGI	CCWGG	1 cut(s)	2014
PspN4I	GGNNCC	1 cut(s)	2020
PspPI	GGNCC	3 cut(s)	505, 1442, 2018
PspPPI	RGGWCCY	1 cut(s)	2018
PstI	CTGCAG	1 cut(s)	1300
PsuI	RGATCY	1 cut(s)	1834
PsyI	GACNNNGTC	3 cut(s)	200, 479, 1141
RruI	TCGCGA	1 cut(s)	669
RsaI	GTAC	7 cut(s)	86, 845, 1023, 1055, 1133, 1361, 1421
RsaNI	GTAC	7 cut(s)	85, 844, 1022, 1054, 1132, 1360, 1420
RseI	CAYNNNNRTG	4 cut(s)	701, 749, 851, 1004
SacII	CCGCGG	2 cut(s)	175, 191
SaqAI	TTAA	2 cut(s)	1632, 1851
Sau3AI	GATC	6 cut(s)	489, 855, 1243, 1581, 1686, 1834
Sau96I	GGNCC	3 cut(s)	505, 1442, 2018
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	3 cut(s)	469, 1192, 2016
SfaNI	GCATC	4 cut(s)	745, 775, 1240, 1629
SfcI	CTRYAG	2 cut(s)	1296, 1675
Sfr274I	CTCGAG	1 cut(s)	1535
Sfr303I	CCGCGG	2 cut(s)	175, 191
SfuI	TTCGAA	1 cut(s)	1527
SgrBI	CCGCGG	2 cut(s)	175, 191
SinI	GGWCC	2 cut(s)	505, 2018
SlaI	CTCGAG	1 cut(s)	1535
SmiMI	CAYNNNNRTG	4 cut(s)	701, 749, 851, 1004
SmlI	CTYRAG	5 cut(s)	1535, 1752, 1802, 1850, 1981
SmoI	CTYRAG	5 cut(s)	1535, 1752, 1802, 1850, 1981
SnaBI	TACGTA	2 cut(s)	843, 1053
SphI	GCATGC	2 cut(s)	1728, 1962
Sse9I	AATT	8 cut(s)	368, 400, 872, 1030, 1046, 1178, 1573, 1585
SseBI	AGGCCT	1 cut(s)	653
SspMI	CTAG	1 cut(s)	479
StuI	AGGCCT	1 cut(s)	653
StyD4I	CCNGG	3 cut(s)	467, 1190, 2014
StyI	CCWWGG	2 cut(s)	1591, 1947
TaaI	ACNGT	5 cut(s)	538, 1058, 1369, 1419, 1902
TaiI	ACGT	4 cut(s)	65, 523, 845, 1055
TaqII	GACCGA	1 cut(s)	115
TasI	AATT	8 cut(s)	368, 400, 872, 1030, 1046, 1178, 1573, 1585
TatI	WGTACW	3 cut(s)	84, 1131, 1359
TauI	GCSGC	9 cut(s)	69, 151, 154, 177, 193, 234, 709, 712, 1965
TfiI	GAWTC	5 cut(s)	432, 610, 671, 961, 1069
Tru1I	TTAA	2 cut(s)	1632, 1851
Tru9I	TTAA	2 cut(s)	1632, 1851
TscAI	CASTG	5 cut(s)	94, 1063, 1288, 1836, 1896
TseFI	GTSAC	4 cut(s)	1516, 1669, 1774, 1866
TseI	GCWGC	7 cut(s)	564, 1376, 1758, 1855, 1965, 1968, 1971
Tsp45I	GTSAC	4 cut(s)	1516, 1669, 1774, 1866
TspDTI	ATGAA	8 cut(s)	17, 635, 824, 1059, 1316, 1445, 1496, 1629
TspGWI	ACGGA	2 cut(s)	1721, 2015
TspRI	CASTG	5 cut(s)	94, 1063, 1288, 1836, 1896
Tth111I	GACNNNGTC	3 cut(s)	200, 479, 1141
Van91I	CCANNNNNTGG	1 cut(s)	1237
Vha464I	CTTAAG	1 cut(s)	1850
VpaK11BI	GGWCC	2 cut(s)	505, 2018
XapI	RAATTY	2 cut(s)	368, 1046
XceI	RCATGY	7 cut(s)	706, 748, 1222, 1315, 1728, 1747, 1962
XhoI	CTCGAG	1 cut(s)	1535
XmiI	GTMKAC	1 cut(s)	455
XmnI	GAANNNNTTC	1 cut(s)	371
XspI	CTAG	1 cut(s)	479
Zsp2I	ATGCAT	3 cut(s)	760, 1156, 1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.