Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0013399

Physical Location & Seq

Genomic Coordinates Reverse (-)

55029196 .. 55032171

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG404000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGGCTATATTTTTGCTCCCCAAACACCATATTCCCAACTATGGCTATCTGAGCATAACACTTCACCAGTCCACAACCCATGCACTGACAGTAACCACCACCATGAGACACCGCCGCCACCTGAGACTGGTTCTGGCAATCCCCACGCGCCGCCACTACGCCACAAAATACACCGCCAAAGTAACCTCAACCTCCCCAACCGGCCGCACCCTCTCCGTCGAGGTGACCCCACCACCTCCCCTCCCCACCGACATCCGCGGCTACACTCTCCCCCGCCGCGACCTCGTCTGCAAAGCCACCCAAATCATCCTCCACCAATCCCGGTCCGCCACGTCGGACCCCTTCCTCGACCTCTCCGACTACCTCTCCTCCCTCTCCCTCTCCCTCACCCCCGCCGAAGCCTCCGAGATCCTCAAGTCCCTAAACGACCCCGACCTCGCCTTAAAATTCTTCCGATTCTGCCCCTCCCTTTCCCCCAAATTCCAACACGACGCCTTCACCTGCAACCGCCTCCTCCTCATCCTCTCCAAGTCCGCCGCCCCCGCCCGCTTCGACCTCGCCCGCTCGATCGTCTCCGACATGCACCGCTCCAACATACGCGGCAACATCTCCACCGTCAATCTCCTCATCGGCCTCTTCGGCAACACCGACGACCTGGAAACCACCATGGGCCTGGTGAAGAAATGGAGCCTCAGCATGACCTCCTACACATACAAATGTCTAGTTCAGGCCTTCTTGCGATCCTACAATTCCACCAAGGCCTTCCAGTCCTACATGGAAATGCGTCGCCATGGTCACAAATTGGACATTTACTCTTACAATATGCTGCTGCATGCACTTGCCAAAGACGAAAAGGTTGAGCAGGCACACAAGGTGTTTGAAGATATGAAGAGGAAGGATTGCGAGCCGGATGAGTTTACATACACAATCATGATCAGAATGAGTGGGAAATTGGGTAAAGGGGATGAGTGCCTGGCGTTTTTTCAGGAATTGTTGAACAAAGGTTGCAATTTGAATTTGATTGTTTATAATACCGTCATTCAGGCTCTTGCTAGGAGCAACATGGTTGATAAGGCGGTCCTTGTGTTTGCGAAAATGGTGGAAGCTGATTGTAGGCCGAATGAGTTTACTTACAGTGTGATTTTGAATCTTTTGGTTGCGCAAGGGCAGCTTGGTAGGTTAGATGAGGTGGTGGATATGTCGAAGAGATATGTGACTAAGTCTATATACGCGTATCTTGTTAAGACATTGAGCAAATTGGGTCATGATGATGAAGCCCACCGGCTGTTCTGCAACATGTGGAAATTCCATGACAAGGGGGATCGGGATGCTTACATGTCGATGTTAGAGAGTTTGTGTGCTGCAGGTAAAACCGCGGAGGCCGTTGATATGTTGAGTAACATTCATGAGAAAGGGGTATCCACTGACACTATGATGTATAACACAGTGTTGGCCGCGCTTGGGAGGTTGAAGCAAATATCAAATCTTCATGAAGTGTATGAAAAGATGAAAAATGATGGCCCTGAACCGGATATATTTACCTACAACATTATGATTTCCAGCTTTGGTAGGGGTGGGAAGGTTGATGAGGCGATGACAATATTCGAACAGCTTGAGAACAGTGATTGTAAACCTGATATCGTATCTTACAATTCATTGATCAATTGCCTTGGGAAGAATGGTGATGTGGATGAAGCCCACATAAGGTTCAAGGAGATGCAGGAGAAAGGGTTCAGCCCTGATGTTGTCACCTACAGCACTCTAATTGAGTGCTTTGGCAAGACAGATAGGGTTGAAATGGCGTGCAGGTTGTTCGATGACATGCTTGCTCAAGGCTGCTGTCCAAACATTGTCACCTACAACATCTTGCTTGATTGTCTTGAGAGGTGTGGGAGGACTGCCGAGGCAGTGGATTTGTATGCAAAACTTAAGCAGCAGGGTTTGACGCCGGATTGGATTACATATTCAGTGCTTGAACGACTGCAAAGTGGTTATCATAGGAAATTCAGAGTTCGTAGGCAGAGTCCTATCACAGGTTGGGTTGTCAGCCCTATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

686

Amino Acids

77.86

Weight (kDa)

8.54

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	228 - 330	3.5e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	235 - 282	1.7e-08	PPR repeat family
PPR_long	PF17177	239 - 407	9.2e-19	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	260 - 317	3e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	264 - 365	4.3e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	265 - 297	5.6e-06	PPR repeat
PPR_2	PF13041	269 - 314	3.6e-17	PPR repeat family
PPR	PF01535	271 - 301	7.1e-06	PPR repeat
PPR_3	PF13812	328 - 386	4.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	334 - 367	1.2e-06	PPR repeat
PPR_2	PF13041	339 - 385	2.4e-12	PPR repeat family
TPR_24	PF23276	445 - 537	5.3e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	465 - 523	1.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	476 - 522	1.4e-10	PPR repeat family
PPR_1	PF12854	507 - 538	1.4e-09	PPR repeat
PPR_2	PF13041	510 - 557	3.7e-13	PPR repeat family
PPR	PF01535	513 - 543	8.3e-07	PPR repeat
TPR_24	PF23276	524 - 642	1.7e-08	Fungal tetratrico peptide repeats
PPR_long	PF17177	528 - 659	1.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	534 - 594	7.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	542 - 573	5e-09	PPR repeat
PPR_2	PF13041	545 - 593	3.4e-17	PPR repeat family
PPR	PF01535	548 - 578	1.4e-08	PPR repeat
PPR_3	PF13812	570 - 625	4.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	576 - 608	4.9e-09	PPR repeat
PPR_2	PF13041	580 - 627	2.2e-16	PPR repeat family
PPR	PF01535	583 - 613	3.4e-06	PPR repeat
PPR_3	PF13812	603 - 658	7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	612 - 639	5.3e-07	PPR repeat
PPR_2	PF13041	615 - 658	4.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51965
fragaria_vesca	FvH4_6g32590
malus_domestica	MD09G1200200.v1.1
prunus_persica	Prupe.3G056800_v2.0.a1
pyrus_communis	pycom09g11780 pycom15g36760
rosa_chinensis	RchiOBHm_Chr2g0141041
rosa_laevigata	RLG00000019910
rosa_multiflora	Rmu_sc0004769.1_g000016 Rmu_sc0012897.1_g000006
rosa_roxburghii	Rroxscaffold_2G00104260
rosa_rugosa	Rorug02G0366300
rosa_samantha	Rh2AG417700 Rh2BG427600 Rh2CG404000 Rh2DG437100
rosa_wichuraiana	Rw2G034190 Rw2G034250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1029
AarI	CACCTGC	1 cut(s)	509
Acc16I	TGCGCA	1 cut(s)	1161
Acc36I	ACCTGC	3 cut(s)	509, 1355, 1797
AccBSI	CCGCTC	2 cut(s)	564, 588
AccII	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
AclWI	GGATC	3 cut(s)	403, 735, 1329
AcoI	YGGCCR	2 cut(s)	202, 1452
AcsI	RAATTY	5 cut(s)	446, 479, 1015, 1304, 2003
AcyI	GRCGYC	2 cut(s)	492, 1946
AdeI	CACNNNGTG	1 cut(s)	874
AfiI	CCNNNNNNNGG	7 cut(s)	41, 127, 1315, 1461, 1528, 1704, 2033
AflII	CTTAAG	1 cut(s)	1928
AflIII	ACRYGT	3 cut(s)	1230, 1296, 1335
AgsI	TTSAA	8 cut(s)	881, 997, 1015, 1147, 1471, 1711, 1796, 1976
AjiI	CACGTC	1 cut(s)	333
AjnI	CCWGG	3 cut(s)	654, 672, 972
AloI	GAACNNNNNNTCC	2 cut(s)	1715, 1747
AluBI	AGCT	4 cut(s)	1106, 1171, 1563, 1612
AluI	AGCT	4 cut(s)	1106, 1171, 1563, 1612
Alw26I	GTCTC	3 cut(s)	100, 118, 577
AlwI	GGATC	3 cut(s)	403, 735, 1329
AoxI	GGCC	9 cut(s)	202, 631, 670, 729, 759, 1115, 1380, 1452, 1519
ApeKI	GCWGC	6 cut(s)	826, 829, 1168, 1361, 1836, 1933
ApoI	RAATTY	5 cut(s)	446, 479, 1015, 1304, 2003
Asp700I	GAANNNNTTC	1 cut(s)	1730
AspLEI	GCGC	3 cut(s)	150, 1162, 1459
AspS9I	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	8 cut(s)	56, 235, 379, 490, 688, 1694, 1741, 1846
AsuII	TTCGAA	1 cut(s)	1605
AvaII	GGWCC	3 cut(s)	324, 337, 1078
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	6 cut(s)	813, 816, 1180, 1348, 1823, 1945
BccI	CCATC	1 cut(s)	1511
BceAI	ACGGC	1 cut(s)	1367
BcgI	CGANNNNNNTGC	2 cut(s)	1795, 1829
BciT130I	CCWGG	3 cut(s)	656, 674, 974
BciVI	GTATCC	1 cut(s)	1429
BclI	TGATCA	2 cut(s)	933, 1659
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	100, 118, 577
BfaI	CTAG	2 cut(s)	722, 1053
BfmI	CTRYAG	2 cut(s)	1362, 1753
BfrI	CTTAAG	1 cut(s)	1928
BfuAI	ACCTGC	3 cut(s)	509, 1355, 1797
BfuI	GTATCC	1 cut(s)	1429
BglI	GCCNNNNNGGC	1 cut(s)	639
Bme1390I	CCNGG	4 cut(s)	322, 656, 674, 974
Bme18I	GGWCC	3 cut(s)	324, 337, 1078
BmgBI	CACGTC	1 cut(s)	333
BmgT120I	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
BmiI	GGNNCC	2 cut(s)	339, 689
BmrFI	CCNGG	4 cut(s)	322, 656, 674, 974
BmsI	GCATC	2 cut(s)	1318, 1707
Bpu10I	CCTNAGC	1 cut(s)	692
Bpu14I	TTCGAA	1 cut(s)	1605
BpuEI	CTTGAG	4 cut(s)	398, 1634, 1815, 1901
BpuMI	CCSGG	1 cut(s)	322
BsaHI	GRCGYC	2 cut(s)	492, 1946
BsaJI	CCNNGG	7 cut(s)	256, 666, 756, 790, 1374, 1669, 1902
BsaWI	WCCGGW	1 cut(s)	1528
BsaXI	ACNNNNNCTCC	8 cut(s)	225, 255, 350, 353, 380, 383, 1715, 1745
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 127, 1315, 1461, 1528, 1704, 2033
Bse118I	RCCGGY	2 cut(s)	200, 1281
Bse1I	ACTGG	3 cut(s)	67, 132, 766
BseBI	CCWGG	3 cut(s)	656, 674, 974
BseDI	CCNNGG	7 cut(s)	256, 666, 756, 790, 1374, 1669, 1902
BseGI	GGATG	7 cut(s)	252, 306, 519, 916, 970, 1333, 1696
BseLI	CCNNNNNNNGG	7 cut(s)	41, 127, 1315, 1461, 1528, 1704, 2033
BseMII	CTCAG	3 cut(s)	41, 113, 706
BseNI	ACTGG	3 cut(s)	67, 132, 766
BseRI	GAGGAG	4 cut(s)	358, 503, 506, 614
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	6 cut(s)	813, 816, 1180, 1348, 1823, 1945
BsgI	GTGCAG	1 cut(s)	1825
Bsh1236I	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
Bsh1285I	CGRYCG	2 cut(s)	205, 570
BshFI	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
BsiEI	CGRYCG	2 cut(s)	205, 570
BsiSI	CCGG	6 cut(s)	201, 322, 908, 1282, 1529, 1949
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	7 cut(s)	41, 127, 1315, 1461, 1528, 1704, 2033
BsmAI	GTCTC	3 cut(s)	100, 118, 577
BsmBI	CGTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
Bsp119I	TTCGAA	1 cut(s)	1605
Bsp143I	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
Bsp19I	CCATGG	2 cut(s)	666, 790
BspANI	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
BspCNI	CTCAG	3 cut(s)	42, 114, 705
BspFNI	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
BspHI	TCATGA	4 cut(s)	930, 1264, 1405, 1489
BspLI	GGNNCC	2 cut(s)	339, 689
BspMAI	CTGCAG	1 cut(s)	1366
BspMI	ACCTGC	3 cut(s)	509, 1355, 1797
BspPI	GGATC	3 cut(s)	403, 735, 1329
BspT104I	TTCGAA	1 cut(s)	1605
BspTI	CTTAAG	1 cut(s)	1928
BsrBI	CCGCTC	2 cut(s)	564, 588
BsrFI	RCCGGY	2 cut(s)	200, 1281
BsrI	ACTGG	3 cut(s)	67, 132, 766
BssAI	RCCGGY	2 cut(s)	200, 1281
BssECI	CCNNGG	7 cut(s)	256, 666, 756, 790, 1374, 1669, 1902
BssMI	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
BssNI	GRCGYC	2 cut(s)	492, 1946
BssT1I	CCWWGG	4 cut(s)	666, 756, 790, 1669
Bst2UI	CCWGG	3 cut(s)	656, 674, 974
Bst4CI	ACNGT	6 cut(s)	91, 616, 1036, 1136, 1447, 1622
Bst6I	CTCTTC	3 cut(s)	641, 884, 1199
BstACI	GRCGYC	2 cut(s)	492, 1946
BstAFI	CTTAAG	1 cut(s)	1928
BstBI	TTCGAA	1 cut(s)	1605
BstC8I	GCNNGC	7 cut(s)	547, 562, 834, 864, 905, 1804, 1827
BstDEI	CTNAG	4 cut(s)	50, 122, 692, 1218
BstDSI	CCRYGG	4 cut(s)	256, 666, 790, 1374
BstEII	GGTNACC	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	2031
BstF5I	GGATG	7 cut(s)	252, 306, 519, 916, 970, 1333, 1696
BstFNI	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
BstHHI	GCGC	3 cut(s)	150, 1162, 1459
BstKTI	GATC	6 cut(s)	411, 570, 743, 936, 1324, 1662
BstMAI	GTCTC	3 cut(s)	100, 118, 577
BstMBI	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
BstMCI	CGRYCG	2 cut(s)	205, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 542, 639, 1168
BstNI	CCWGG	3 cut(s)	656, 674, 974
BstNSI	RCATGY	5 cut(s)	583, 836, 1300, 1339, 1825
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	4 cut(s)	320, 654, 672, 972
BstSFI	CTRYAG	2 cut(s)	1362, 1753
BstUI	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
BstV1I	GCAGC	6 cut(s)	813, 816, 1180, 1348, 1823, 1945
BstX2I	RGATCY	1 cut(s)	408
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	408
BstZI	CGGCCG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	1429
BsuRI	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
BtgI	CCRYGG	4 cut(s)	256, 666, 790, 1374
BtgZI	GCGATG	1 cut(s)	1607
BtrI	CACGTC	1 cut(s)	333
BtsCI	GGATG	7 cut(s)	252, 306, 519, 916, 970, 1333, 1696
BtsI	GCAGTG	1 cut(s)	1914
BtsIMutI	CAGTG	7 cut(s)	83, 1141, 1422, 1452, 1627, 1914, 1974
BveI	ACCTGC	3 cut(s)	509, 1355, 1797
Cac8I	GCNNGC	7 cut(s)	547, 562, 834, 864, 905, 1804, 1827
CciI	TCATGA	4 cut(s)	930, 1264, 1405, 1489
CfoI	GCGC	3 cut(s)	150, 1162, 1459
Cfr10I	RCCGGY	2 cut(s)	200, 1281
Cfr13I	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
Cfr42I	CCGCGG	2 cut(s)	259, 1377
CpoI	CGGWCCG	1 cut(s)	324
CseI	GACGC	3 cut(s)	500, 773, 1954
CspI	CGGWCCG	1 cut(s)	324
DdeI	CTNAG	4 cut(s)	50, 122, 692, 1218
DpnI	GATC	6 cut(s)	410, 569, 742, 935, 1323, 1661
DpnII	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
DraIII	CACNNNGTG	1 cut(s)	874
EaeI	YGGCCR	2 cut(s)	202, 1452
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	3 cut(s)	641, 884, 1199
EarI	CTCTTC	3 cut(s)	641, 884, 1199
EciI	GGCGGA	2 cut(s)	316, 523
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	4 cut(s)	666, 756, 790, 1669
Eco147I	AGGCCT	2 cut(s)	731, 761
Eco32I	GATATC	1 cut(s)	1639
Eco47I	GGWCC	3 cut(s)	324, 337, 1078
Eco52I	CGGCCG	1 cut(s)	202
Eco91I	GGTNACC	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	2031
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	3 cut(s)	654, 672, 972
EcoRV	GATATC	1 cut(s)	1639
EcoT14I	CCWWGG	4 cut(s)	666, 756, 790, 1669
ErhI	CCWWGG	4 cut(s)	666, 756, 790, 1669
Esp3I	CGTCTC	1 cut(s)	577
FalI	AAGNNNNNCTT	2 cut(s)	1155, 1187
FaqI	GGGAC	1 cut(s)	403
FauI	CCCGC	5 cut(s)	281, 400, 550, 554, 569
FbaI	TGATCA	2 cut(s)	933, 1659
FokI	GGATG	7 cut(s)	239, 293, 506, 923, 977, 1340, 1703
FspBI	CTAG	2 cut(s)	722, 1053
FspI	TGCGCA	1 cut(s)	1161
GlaI	GCGC	3 cut(s)	149, 1161, 1458
HaeIII	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
HapII	CCGG	6 cut(s)	201, 322, 908, 1282, 1529, 1949
HgaI	GACGC	3 cut(s)	500, 773, 1954
HhaI	GCGC	3 cut(s)	150, 1162, 1459
Hin1I	GRCGYC	2 cut(s)	492, 1946
Hin6I	GCGC	3 cut(s)	148, 1160, 1457
HinP1I	GCGC	3 cut(s)	148, 1160, 1457
HinfI	GANTC	3 cut(s)	456, 1147, 2023
HpaII	CCGG	6 cut(s)	201, 322, 908, 1282, 1529, 1949
HphI	GGTGA	8 cut(s)	56, 235, 379, 490, 688, 1694, 1741, 1846
Hpy166II	GTNNAC	4 cut(s)	72, 918, 1128, 1631
Hpy188I	TCNGA	8 cut(s)	51, 337, 358, 406, 455, 577, 938, 2009
Hpy188III	TCNNGA	7 cut(s)	931, 986, 1265, 1325, 1406, 1490, 1880
Hpy8I	GTNNAC	4 cut(s)	72, 918, 1128, 1631
Hpy99I	CGWCG	5 cut(s)	221, 337, 494, 653, 789
HpyAV	CCTTC	6 cut(s)	352, 505, 742, 772, 889, 1573
HpyCH4III	ACNGT	6 cut(s)	91, 616, 1036, 1136, 1447, 1622
HpyCH4IV	ACGT	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 542, 639, 1168
HpyF3I	CTNAG	4 cut(s)	50, 122, 692, 1218
HpySE526I	ACGT	1 cut(s)	332
Hsp92I	GRCGYC	2 cut(s)	492, 1946
HspAI	GCGC	3 cut(s)	148, 1160, 1457
Ksp22I	TGATCA	2 cut(s)	933, 1659
KspI	CCGCGG	2 cut(s)	259, 1377
Kzo9I	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
LmnI	GCTCC	4 cut(s)	21, 593, 687, 1056
Lsp1109I	GCAGC	6 cut(s)	813, 816, 1180, 1348, 1823, 1945
LweI	GCATC	2 cut(s)	1318, 1707
MaeI	CTAG	2 cut(s)	722, 1053
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	8 cut(s)	91, 181, 223, 794, 1213, 1397, 1747, 1852
MalI	GATC	6 cut(s)	410, 569, 742, 935, 1323, 1661
MbiI	CCGCTC	2 cut(s)	564, 588
MboI	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
MboII	GAAGA	8 cut(s)	442, 628, 691, 893, 901, 1216, 1478, 1687
MfeI	CAATTG	1 cut(s)	1663
MflI	RGATCY	1 cut(s)	408
MluI	ACGCGT	1 cut(s)	1230
MlyI	GAGTC	1 cut(s)	2032
MmeI	TCCRAC	5 cut(s)	315, 381, 508, 600, 615
MroXI	GAANNNNTTC	1 cut(s)	1730
MseI	TTAA	3 cut(s)	443, 1242, 1929
MslI	CAYNNNNRTG	7 cut(s)	101, 715, 779, 929, 1269, 1340, 1433
MspA1I	CMGCKG	2 cut(s)	258, 1376
MspCI	CTTAAG	1 cut(s)	1928
MspI	CCGG	6 cut(s)	201, 322, 908, 1282, 1529, 1949
MspR9I	CCNGG	4 cut(s)	322, 656, 674, 974
MunI	CAATTG	1 cut(s)	1663
MvaI	CCWGG	3 cut(s)	656, 674, 974
MvnI	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
MwoI	GCNNNNNNNGC	4 cut(s)	51, 542, 639, 1168
NciI	CCSGG	1 cut(s)	322
NcoI	CCATGG	2 cut(s)	666, 790
NdeII	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
NlaIV	GGNNCC	2 cut(s)	339, 689
NmeAIII	GCCGAG	1 cut(s)	1927
NmuCI	GTSAC	5 cut(s)	223, 794, 1213, 1747, 1852
NsbI	TGCGCA	1 cut(s)	1161
NspI	RCATGY	5 cut(s)	583, 836, 1300, 1339, 1825
NspV	TTCGAA	1 cut(s)	1605
PaeI	GCATGC	1 cut(s)	836
PagI	TCATGA	4 cut(s)	930, 1264, 1405, 1489
PaqCI	CACCTGC	1 cut(s)	509
PceI	AGGCCT	2 cut(s)	731, 761
PciI	ACATGT	2 cut(s)	1296, 1335
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 645
PdmI	GAANNNNTTC	1 cut(s)	1730
PfeI	GAWTC	2 cut(s)	456, 1147
PflFI	GACNNNGTC	2 cut(s)	284, 1219
Ple19I	CGATCG	1 cut(s)	570
PleI	GAGTC	1 cut(s)	2031
PpsI	GAGTC	1 cut(s)	2031
PscI	ACATGT	2 cut(s)	1296, 1335
PsiI	TTATAA	1 cut(s)	1029
Psp6I	CCWGG	3 cut(s)	654, 672, 972
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	3 cut(s)	654, 672, 972
PspN4I	GGNNCC	2 cut(s)	339, 689
PspPI	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
PstI	CTGCAG	1 cut(s)	1366
PsuI	RGATCY	1 cut(s)	408
PsyI	GACNNNGTC	2 cut(s)	284, 1219
PvuI	CGATCG	1 cut(s)	570
RseI	CAYNNNNRTG	7 cut(s)	101, 715, 779, 929, 1269, 1340, 1433
Rsr2I	CGGWCCG	1 cut(s)	324
RsrII	CGGWCCG	1 cut(s)	324
SacII	CCGCGG	2 cut(s)	259, 1377
SaqAI	TTAA	3 cut(s)	443, 1242, 1929
Sau3AI	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
Sau96I	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
SchI	GAGTC	1 cut(s)	2032
ScrFI	CCNGG	4 cut(s)	322, 656, 674, 974
SfaNI	GCATC	2 cut(s)	1318, 1707
SfcI	CTRYAG	2 cut(s)	1362, 1753
Sfr303I	CCGCGG	2 cut(s)	259, 1377
SfuI	TTCGAA	1 cut(s)	1605
SgrBI	CCGCGG	2 cut(s)	259, 1377
SinI	GGWCC	3 cut(s)	324, 337, 1078
SmiMI	CAYNNNNRTG	7 cut(s)	101, 715, 779, 929, 1269, 1340, 1433
SmlI	CTYRAG	5 cut(s)	413, 1613, 1830, 1880, 1928
SmoI	CTYRAG	5 cut(s)	413, 1613, 1830, 1880, 1928
SphI	GCATGC	1 cut(s)	836
SseBI	AGGCCT	2 cut(s)	731, 761
SspI	AATATT	1 cut(s)	1602
SspMI	CTAG	2 cut(s)	722, 1053
StuI	AGGCCT	2 cut(s)	731, 761
StyD4I	CCNGG	4 cut(s)	320, 654, 672, 972
StyI	CCWWGG	4 cut(s)	666, 756, 790, 1669
TaaI	ACNGT	6 cut(s)	91, 616, 1036, 1136, 1447, 1622
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	8 cut(s)	219, 348, 552, 566, 1202, 1340, 1605, 1815
TauI	GCSGC	8 cut(s)	117, 153, 207, 261, 279, 539, 603, 1457
TfiI	GAWTC	2 cut(s)	456, 1147
Tru1I	TTAA	3 cut(s)	443, 1242, 1929
Tru9I	TTAA	3 cut(s)	443, 1242, 1929
TscAI	CASTG	7 cut(s)	90, 1141, 1429, 1452, 1627, 1914, 1974
TseFI	GTSAC	5 cut(s)	223, 794, 1213, 1747, 1852
TseI	GCWGC	6 cut(s)	826, 829, 1168, 1361, 1836, 1933
Tsp45I	GTSAC	5 cut(s)	223, 794, 1213, 1747, 1852
TspDTI	ATGAA	9 cut(s)	902, 1287, 1394, 1478, 1506, 1515, 1523, 1644, 1707
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	7 cut(s)	90, 1141, 1429, 1452, 1627, 1914, 1974
Tth111I	GACNNNGTC	2 cut(s)	284, 1219
Vha464I	CTTAAG	1 cut(s)	1928
VpaK11BI	GGWCC	3 cut(s)	324, 337, 1078
XagI	CCTNNNNNAGG	1 cut(s)	2031
XapI	RAATTY	5 cut(s)	446, 479, 1015, 1304, 2003
XceI	RCATGY	5 cut(s)	583, 836, 1300, 1339, 1825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	1730
XspI	CTAG	2 cut(s)	722, 1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.