Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013399

Physical Location & Seq

Genomic Coordinates Reverse (-)

62055421 .. 62058396

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG417700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGGCTATATTTTTGCTCCCCAAACACCATATTCCCAACTATGGCTATCTGAGCATAACACTTCACCAGTCCACAACCCATGCACTGACAGTAACCACCACCATGAGACACCGCCGCCACCTGAGACTGGTTCTGGCAATCCCCACGCGCCGCCACTACGCCACAAAATACACCGCCAAAGTAACCTCAACCTCCCCAACCGGCCGCACCCTCTCCGTCGAGGTGACCCCACCACCTCCCCTCCCCACCGACATCCGCGGCTACACTCTCCCCCGCCGCGACCTCGTCTGCAAAGCCACCCAAATCATCCTCCACCAATCCCGGTCCGCCACGTCGGACCCCTTCCTCGACCTCTCCGACTACCTCTCCTCCCTCTCCCTCTCCCTCACCCCCGCCGAAGCCTCCGAGATCCTCAAGTCCCTAAACGACCCCGACCTCGCCTTAAAATTCTTCCGATTCTGCCCCTCCCTTTCCCCCAAATTCCAACACGACGCCTTCACCTGCAACCGCCTCCTCCTCATCCTCTCCAAGTCCGCCGCCCCCGCCCGCTTCGACCTCGCCCGCTCGATCGTCTCCGACATGCACCGCTCCAACATACGCGGCAACATCTCCACCGTCAATCTCCTCATCGGCCTCTTCGGCAACACCGACGACCTGGAAACCACCATGGGCCTGGTGAAGAAATGGAGCCTCAGCATGACCTCCTACACATACAAATGTCTAGTTCAGGCCTTCTTGCGATCCTACAATTCCACCAAGGCCTTCCAGTCCTACATGGAAATGCGTCGCCATGGTCACAAATTGGACATTTACTCTTACAATATGCTGCTGCATGCACTTGCCAAAGACGAAAAGGTTGAGCAGGCACACAAGGTGTTTGAAGATATGAAGAGGAAGGATTGCGAGCCGGATGAGTTTACATACACAATCATGATCAGAATGAGTGGGAAATTGGGTAAAGGGGATGAGTGCCTGGCGTTTTTTCAGGAATTGTTGAACAAAGGTTGCAATTTGAATTTGATTGTTTATAATACCGTCATTCAGGCTCTTGCTAGGAGCAACATGGTTGATAAGGCGGTCCTTGTGTTTGCGAAAATGGTGGAAGCTGATTGTAGGCCGAATGAGTTTACTTACAGTGTGATTTTGAATCTTTTGGTTGCGCAAGGGCAGCTTGGTAGGTTAGATGAGGTGGTGGATATGTCGAAGAGATATGTGACTAAGTCTATATACGCGTATCTTGTTAAGACATTGAGCAAATTGGGTCATGATGATGAAGCCCACCGGCTGTTCTGCAACATGTGGAAATTCCATGACAAGGGGGATCGGGATGCTTACATGTCGATGTTAGAGAGTTTGTGTGCTGCAGGTAAAACCGCGGAGGCCGTTGATATGTTGAGTAACATTCATGAGAAAGGGGTATCCACTGACACTATGATGTATAACACAGTGTTGGCCGCGCTTGGGAGGTTGAAGCAAATATCAAATCTTCATGAAGTGTATGAAAAGATGAAAAATGATGGCCCTGAACCGGATATATTTACCTACAACATTATGATTTCCAGCTTTGGTAGGGGTGGGAAGGTTGATGAGGCGATGACAATATTCGAACAGCTTGAGAACAGTGATTGTAAACCTGATATCGTATCTTACAATTCATTGATCAATTGCCTTGGGAAGAATGGTGATGTGGATGAAGCCCACATAAGGTTCAAGGAGATGCAGGAGAAAGGGTTCAGCCCTGATGTTGTCACCTACAGCACTCTAATTGAGTGCTTTGGCAAGACAGATAGGGTTGAAATGGCGTGCAGGTTGTTCGATGACATGCTTGCTCAAGGCTGCTGTCCAAACATTGTCACCTACAACATCTTGCTTGATTGTCTTGAGAGGTGTGGGAGGACTGCCGAGGCAGTGGATTTGTATGCAAAACTTAAGCAGCAGGGTTTGACGCCGGATTGGATTACATATTCAGTGCTTGAACGACTGCAAAGTGGTTATCATAGGAAATTCAGAGTTCGTAGGCAGAGTCCTATCACAGGTTGGGTTGTCAGCCCTATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

686

Amino Acids

77.86

Weight (kDa)

8.54

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	228 - 330	3.5e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	235 - 282	1.7e-08	PPR repeat family
PPR_long	PF17177	239 - 407	9.2e-19	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	260 - 317	3e-11	Pentatricopeptide repeat domain
TPR_24	PF23276	264 - 365	4.3e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	265 - 297	5.6e-06	PPR repeat
PPR_2	PF13041	269 - 314	3.6e-17	PPR repeat family
PPR	PF01535	271 - 301	7.1e-06	PPR repeat
PPR_3	PF13812	328 - 386	4.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	334 - 367	1.2e-06	PPR repeat
PPR_2	PF13041	339 - 385	2.4e-12	PPR repeat family
TPR_24	PF23276	445 - 537	5.3e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	465 - 523	1.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	476 - 522	1.4e-10	PPR repeat family
PPR_1	PF12854	507 - 538	1.4e-09	PPR repeat
PPR_2	PF13041	510 - 557	3.7e-13	PPR repeat family
PPR	PF01535	513 - 543	8.3e-07	PPR repeat
TPR_24	PF23276	524 - 642	1.7e-08	Fungal tetratrico peptide repeats
PPR_long	PF17177	528 - 659	1.6e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	534 - 594	7.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	542 - 573	5e-09	PPR repeat
PPR_2	PF13041	545 - 593	3.4e-17	PPR repeat family
PPR	PF01535	548 - 578	1.4e-08	PPR repeat
PPR_3	PF13812	570 - 625	4.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	576 - 608	4.9e-09	PPR repeat
PPR_2	PF13041	580 - 627	2.2e-16	PPR repeat family
PPR	PF01535	583 - 613	3.4e-06	PPR repeat
PPR_3	PF13812	603 - 658	7e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	612 - 639	5.3e-07	PPR repeat
PPR_2	PF13041	615 - 658	4.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51965
fragaria_vesca	FvH4_6g32590
malus_domestica	MD09G1200200.v1.1
prunus_persica	Prupe.3G056800_v2.0.a1
pyrus_communis	pycom09g11780 pycom15g36760
rosa_chinensis	RchiOBHm_Chr2g0141041
rosa_laevigata	RLG00000019910
rosa_multiflora	Rmu_sc0004769.1_g000016 Rmu_sc0012897.1_g000006
rosa_roxburghii	Rroxscaffold_2G00104260
rosa_rugosa	Rorug02G0366300
rosa_samantha	Rh2AG417700 Rh2BG427600 Rh2CG404000 Rh2DG437100
rosa_wichuraiana	Rw2G034190 Rw2G034250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1029
AarI	CACCTGC	1 cut(s)	509
Acc16I	TGCGCA	1 cut(s)	1161
Acc36I	ACCTGC	3 cut(s)	509, 1355, 1797
AccBSI	CCGCTC	2 cut(s)	564, 588
AccII	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
AclWI	GGATC	3 cut(s)	403, 735, 1329
AcoI	YGGCCR	2 cut(s)	202, 1452
AcsI	RAATTY	5 cut(s)	446, 479, 1015, 1304, 2003
AcyI	GRCGYC	2 cut(s)	492, 1946
AdeI	CACNNNGTG	1 cut(s)	874
AfiI	CCNNNNNNNGG	7 cut(s)	41, 127, 1315, 1461, 1528, 1704, 2033
AflII	CTTAAG	1 cut(s)	1928
AflIII	ACRYGT	3 cut(s)	1230, 1296, 1335
AgsI	TTSAA	8 cut(s)	881, 997, 1015, 1147, 1471, 1711, 1796, 1976
AjiI	CACGTC	1 cut(s)	333
AjnI	CCWGG	3 cut(s)	654, 672, 972
AloI	GAACNNNNNNTCC	2 cut(s)	1715, 1747
AluBI	AGCT	4 cut(s)	1106, 1171, 1563, 1612
AluI	AGCT	4 cut(s)	1106, 1171, 1563, 1612
Alw26I	GTCTC	3 cut(s)	100, 118, 577
AlwI	GGATC	3 cut(s)	403, 735, 1329
AoxI	GGCC	9 cut(s)	202, 631, 670, 729, 759, 1115, 1380, 1452, 1519
ApeKI	GCWGC	6 cut(s)	826, 829, 1168, 1361, 1836, 1933
ApoI	RAATTY	5 cut(s)	446, 479, 1015, 1304, 2003
Asp700I	GAANNNNTTC	1 cut(s)	1730
AspLEI	GCGC	3 cut(s)	150, 1162, 1459
AspS9I	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
AsuC2I	CCSGG	1 cut(s)	322
AsuHPI	GGTGA	8 cut(s)	56, 235, 379, 490, 688, 1694, 1741, 1846
AsuII	TTCGAA	1 cut(s)	1605
AvaII	GGWCC	3 cut(s)	324, 337, 1078
BbvCI	CCTCAGC	1 cut(s)	692
BbvI	GCAGC	6 cut(s)	813, 816, 1180, 1348, 1823, 1945
BccI	CCATC	1 cut(s)	1511
BceAI	ACGGC	1 cut(s)	1367
BcgI	CGANNNNNNTGC	2 cut(s)	1795, 1829
BciT130I	CCWGG	3 cut(s)	656, 674, 974
BciVI	GTATCC	1 cut(s)	1429
BclI	TGATCA	2 cut(s)	933, 1659
BcnI	CCSGG	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	100, 118, 577
BfaI	CTAG	2 cut(s)	722, 1053
BfmI	CTRYAG	2 cut(s)	1362, 1753
BfrI	CTTAAG	1 cut(s)	1928
BfuAI	ACCTGC	3 cut(s)	509, 1355, 1797
BfuI	GTATCC	1 cut(s)	1429
BglI	GCCNNNNNGGC	1 cut(s)	639
Bme1390I	CCNGG	4 cut(s)	322, 656, 674, 974
Bme18I	GGWCC	3 cut(s)	324, 337, 1078
BmgBI	CACGTC	1 cut(s)	333
BmgT120I	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
BmiI	GGNNCC	2 cut(s)	339, 689
BmrFI	CCNGG	4 cut(s)	322, 656, 674, 974
BmsI	GCATC	2 cut(s)	1318, 1707
Bpu10I	CCTNAGC	1 cut(s)	692
Bpu14I	TTCGAA	1 cut(s)	1605
BpuEI	CTTGAG	4 cut(s)	398, 1634, 1815, 1901
BpuMI	CCSGG	1 cut(s)	322
BsaHI	GRCGYC	2 cut(s)	492, 1946
BsaJI	CCNNGG	7 cut(s)	256, 666, 756, 790, 1374, 1669, 1902
BsaWI	WCCGGW	1 cut(s)	1528
BsaXI	ACNNNNNCTCC	8 cut(s)	225, 255, 350, 353, 380, 383, 1715, 1745
Bsc4I	CCNNNNNNNGG	7 cut(s)	41, 127, 1315, 1461, 1528, 1704, 2033
Bse118I	RCCGGY	2 cut(s)	200, 1281
Bse1I	ACTGG	3 cut(s)	67, 132, 766
BseBI	CCWGG	3 cut(s)	656, 674, 974
BseDI	CCNNGG	7 cut(s)	256, 666, 756, 790, 1374, 1669, 1902
BseGI	GGATG	7 cut(s)	252, 306, 519, 916, 970, 1333, 1696
BseLI	CCNNNNNNNGG	7 cut(s)	41, 127, 1315, 1461, 1528, 1704, 2033
BseMII	CTCAG	3 cut(s)	41, 113, 706
BseNI	ACTGG	3 cut(s)	67, 132, 766
BseRI	GAGGAG	4 cut(s)	358, 503, 506, 614
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	6 cut(s)	813, 816, 1180, 1348, 1823, 1945
BsgI	GTGCAG	1 cut(s)	1825
Bsh1236I	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
Bsh1285I	CGRYCG	2 cut(s)	205, 570
BshFI	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
BsiEI	CGRYCG	2 cut(s)	205, 570
BsiSI	CCGG	6 cut(s)	201, 322, 908, 1282, 1529, 1949
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	7 cut(s)	41, 127, 1315, 1461, 1528, 1704, 2033
BsmAI	GTCTC	3 cut(s)	100, 118, 577
BsmBI	CGTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
Bsp119I	TTCGAA	1 cut(s)	1605
Bsp143I	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
Bsp19I	CCATGG	2 cut(s)	666, 790
BspANI	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
BspCNI	CTCAG	3 cut(s)	42, 114, 705
BspFNI	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
BspHI	TCATGA	4 cut(s)	930, 1264, 1405, 1489
BspLI	GGNNCC	2 cut(s)	339, 689
BspMAI	CTGCAG	1 cut(s)	1366
BspMI	ACCTGC	3 cut(s)	509, 1355, 1797
BspPI	GGATC	3 cut(s)	403, 735, 1329
BspT104I	TTCGAA	1 cut(s)	1605
BspTI	CTTAAG	1 cut(s)	1928
BsrBI	CCGCTC	2 cut(s)	564, 588
BsrFI	RCCGGY	2 cut(s)	200, 1281
BsrI	ACTGG	3 cut(s)	67, 132, 766
BssAI	RCCGGY	2 cut(s)	200, 1281
BssECI	CCNNGG	7 cut(s)	256, 666, 756, 790, 1374, 1669, 1902
BssMI	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
BssNI	GRCGYC	2 cut(s)	492, 1946
BssT1I	CCWWGG	4 cut(s)	666, 756, 790, 1669
Bst2UI	CCWGG	3 cut(s)	656, 674, 974
Bst4CI	ACNGT	6 cut(s)	91, 616, 1036, 1136, 1447, 1622
Bst6I	CTCTTC	3 cut(s)	641, 884, 1199
BstACI	GRCGYC	2 cut(s)	492, 1946
BstAFI	CTTAAG	1 cut(s)	1928
BstBI	TTCGAA	1 cut(s)	1605
BstC8I	GCNNGC	7 cut(s)	547, 562, 834, 864, 905, 1804, 1827
BstDEI	CTNAG	4 cut(s)	50, 122, 692, 1218
BstDSI	CCRYGG	4 cut(s)	256, 666, 790, 1374
BstEII	GGTNACC	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	2031
BstF5I	GGATG	7 cut(s)	252, 306, 519, 916, 970, 1333, 1696
BstFNI	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
BstHHI	GCGC	3 cut(s)	150, 1162, 1459
BstKTI	GATC	6 cut(s)	411, 570, 743, 936, 1324, 1662
BstMAI	GTCTC	3 cut(s)	100, 118, 577
BstMBI	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
BstMCI	CGRYCG	2 cut(s)	205, 570
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 542, 639, 1168
BstNI	CCWGG	3 cut(s)	656, 674, 974
BstNSI	RCATGY	5 cut(s)	583, 836, 1300, 1339, 1825
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	4 cut(s)	320, 654, 672, 972
BstSFI	CTRYAG	2 cut(s)	1362, 1753
BstUI	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
BstV1I	GCAGC	6 cut(s)	813, 816, 1180, 1348, 1823, 1945
BstX2I	RGATCY	1 cut(s)	408
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	408
BstZI	CGGCCG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	1429
BsuRI	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
BtgI	CCRYGG	4 cut(s)	256, 666, 790, 1374
BtgZI	GCGATG	1 cut(s)	1607
BtrI	CACGTC	1 cut(s)	333
BtsCI	GGATG	7 cut(s)	252, 306, 519, 916, 970, 1333, 1696
BtsI	GCAGTG	1 cut(s)	1914
BtsIMutI	CAGTG	7 cut(s)	83, 1141, 1422, 1452, 1627, 1914, 1974
BveI	ACCTGC	3 cut(s)	509, 1355, 1797
Cac8I	GCNNGC	7 cut(s)	547, 562, 834, 864, 905, 1804, 1827
CciI	TCATGA	4 cut(s)	930, 1264, 1405, 1489
CfoI	GCGC	3 cut(s)	150, 1162, 1459
Cfr10I	RCCGGY	2 cut(s)	200, 1281
Cfr13I	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
Cfr42I	CCGCGG	2 cut(s)	259, 1377
CpoI	CGGWCCG	1 cut(s)	324
CseI	GACGC	3 cut(s)	500, 773, 1954
CspI	CGGWCCG	1 cut(s)	324
DdeI	CTNAG	4 cut(s)	50, 122, 692, 1218
DpnI	GATC	6 cut(s)	410, 569, 742, 935, 1323, 1661
DpnII	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
DraIII	CACNNNGTG	1 cut(s)	874
EaeI	YGGCCR	2 cut(s)	202, 1452
EagI	CGGCCG	1 cut(s)	202
Eam1104I	CTCTTC	3 cut(s)	641, 884, 1199
EarI	CTCTTC	3 cut(s)	641, 884, 1199
EciI	GGCGGA	2 cut(s)	316, 523
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	4 cut(s)	666, 756, 790, 1669
Eco147I	AGGCCT	2 cut(s)	731, 761
Eco32I	GATATC	1 cut(s)	1639
Eco47I	GGWCC	3 cut(s)	324, 337, 1078
Eco52I	CGGCCG	1 cut(s)	202
Eco91I	GGTNACC	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	2031
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	3 cut(s)	654, 672, 972
EcoRV	GATATC	1 cut(s)	1639
EcoT14I	CCWWGG	4 cut(s)	666, 756, 790, 1669
ErhI	CCWWGG	4 cut(s)	666, 756, 790, 1669
Esp3I	CGTCTC	1 cut(s)	577
FalI	AAGNNNNNCTT	2 cut(s)	1155, 1187
FaqI	GGGAC	1 cut(s)	403
FauI	CCCGC	5 cut(s)	281, 400, 550, 554, 569
FbaI	TGATCA	2 cut(s)	933, 1659
FokI	GGATG	7 cut(s)	239, 293, 506, 923, 977, 1340, 1703
FspBI	CTAG	2 cut(s)	722, 1053
FspI	TGCGCA	1 cut(s)	1161
GlaI	GCGC	3 cut(s)	149, 1161, 1458
HaeIII	GGCC	9 cut(s)	204, 633, 672, 731, 761, 1117, 1382, 1454, 1521
HapII	CCGG	6 cut(s)	201, 322, 908, 1282, 1529, 1949
HgaI	GACGC	3 cut(s)	500, 773, 1954
HhaI	GCGC	3 cut(s)	150, 1162, 1459
Hin1I	GRCGYC	2 cut(s)	492, 1946
Hin6I	GCGC	3 cut(s)	148, 1160, 1457
HinP1I	GCGC	3 cut(s)	148, 1160, 1457
HinfI	GANTC	3 cut(s)	456, 1147, 2023
HpaII	CCGG	6 cut(s)	201, 322, 908, 1282, 1529, 1949
HphI	GGTGA	8 cut(s)	56, 235, 379, 490, 688, 1694, 1741, 1846
Hpy166II	GTNNAC	4 cut(s)	72, 918, 1128, 1631
Hpy188I	TCNGA	8 cut(s)	51, 337, 358, 406, 455, 577, 938, 2009
Hpy188III	TCNNGA	7 cut(s)	931, 986, 1265, 1325, 1406, 1490, 1880
Hpy8I	GTNNAC	4 cut(s)	72, 918, 1128, 1631
Hpy99I	CGWCG	5 cut(s)	221, 337, 494, 653, 789
HpyAV	CCTTC	6 cut(s)	352, 505, 742, 772, 889, 1573
HpyCH4III	ACNGT	6 cut(s)	91, 616, 1036, 1136, 1447, 1622
HpyCH4IV	ACGT	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 542, 639, 1168
HpyF3I	CTNAG	4 cut(s)	50, 122, 692, 1218
HpySE526I	ACGT	1 cut(s)	332
Hsp92I	GRCGYC	2 cut(s)	492, 1946
HspAI	GCGC	3 cut(s)	148, 1160, 1457
Ksp22I	TGATCA	2 cut(s)	933, 1659
KspI	CCGCGG	2 cut(s)	259, 1377
Kzo9I	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
LmnI	GCTCC	4 cut(s)	21, 593, 687, 1056
Lsp1109I	GCAGC	6 cut(s)	813, 816, 1180, 1348, 1823, 1945
LweI	GCATC	2 cut(s)	1318, 1707
MaeI	CTAG	2 cut(s)	722, 1053
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	8 cut(s)	91, 181, 223, 794, 1213, 1397, 1747, 1852
MalI	GATC	6 cut(s)	410, 569, 742, 935, 1323, 1661
MbiI	CCGCTC	2 cut(s)	564, 588
MboI	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
MboII	GAAGA	8 cut(s)	442, 628, 691, 893, 901, 1216, 1478, 1687
MfeI	CAATTG	1 cut(s)	1663
MflI	RGATCY	1 cut(s)	408
MluI	ACGCGT	1 cut(s)	1230
MlyI	GAGTC	1 cut(s)	2032
MmeI	TCCRAC	5 cut(s)	315, 381, 508, 600, 615
MroXI	GAANNNNTTC	1 cut(s)	1730
MseI	TTAA	3 cut(s)	443, 1242, 1929
MslI	CAYNNNNRTG	7 cut(s)	101, 715, 779, 929, 1269, 1340, 1433
MspA1I	CMGCKG	2 cut(s)	258, 1376
MspCI	CTTAAG	1 cut(s)	1928
MspI	CCGG	6 cut(s)	201, 322, 908, 1282, 1529, 1949
MspR9I	CCNGG	4 cut(s)	322, 656, 674, 974
MunI	CAATTG	1 cut(s)	1663
MvaI	CCWGG	3 cut(s)	656, 674, 974
MvnI	CGCG	7 cut(s)	148, 258, 279, 600, 1232, 1376, 1457
MwoI	GCNNNNNNNGC	4 cut(s)	51, 542, 639, 1168
NciI	CCSGG	1 cut(s)	322
NcoI	CCATGG	2 cut(s)	666, 790
NdeII	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
NlaIV	GGNNCC	2 cut(s)	339, 689
NmeAIII	GCCGAG	1 cut(s)	1927
NmuCI	GTSAC	5 cut(s)	223, 794, 1213, 1747, 1852
NsbI	TGCGCA	1 cut(s)	1161
NspI	RCATGY	5 cut(s)	583, 836, 1300, 1339, 1825
NspV	TTCGAA	1 cut(s)	1605
PaeI	GCATGC	1 cut(s)	836
PagI	TCATGA	4 cut(s)	930, 1264, 1405, 1489
PaqCI	CACCTGC	1 cut(s)	509
PceI	AGGCCT	2 cut(s)	731, 761
PciI	ACATGT	2 cut(s)	1296, 1335
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 645
PdmI	GAANNNNTTC	1 cut(s)	1730
PfeI	GAWTC	2 cut(s)	456, 1147
PflFI	GACNNNGTC	2 cut(s)	284, 1219
Ple19I	CGATCG	1 cut(s)	570
PleI	GAGTC	1 cut(s)	2031
PpsI	GAGTC	1 cut(s)	2031
PscI	ACATGT	2 cut(s)	1296, 1335
PsiI	TTATAA	1 cut(s)	1029
Psp6I	CCWGG	3 cut(s)	654, 672, 972
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	3 cut(s)	654, 672, 972
PspN4I	GGNNCC	2 cut(s)	339, 689
PspPI	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
PstI	CTGCAG	1 cut(s)	1366
PsuI	RGATCY	1 cut(s)	408
PsyI	GACNNNGTC	2 cut(s)	284, 1219
PvuI	CGATCG	1 cut(s)	570
RseI	CAYNNNNRTG	7 cut(s)	101, 715, 779, 929, 1269, 1340, 1433
Rsr2I	CGGWCCG	1 cut(s)	324
RsrII	CGGWCCG	1 cut(s)	324
SacII	CCGCGG	2 cut(s)	259, 1377
SaqAI	TTAA	3 cut(s)	443, 1242, 1929
Sau3AI	GATC	6 cut(s)	408, 567, 740, 933, 1321, 1659
Sau96I	GGNCC	5 cut(s)	324, 337, 670, 1078, 1520
SchI	GAGTC	1 cut(s)	2032
ScrFI	CCNGG	4 cut(s)	322, 656, 674, 974
SfaNI	GCATC	2 cut(s)	1318, 1707
SfcI	CTRYAG	2 cut(s)	1362, 1753
Sfr303I	CCGCGG	2 cut(s)	259, 1377
SfuI	TTCGAA	1 cut(s)	1605
SgrBI	CCGCGG	2 cut(s)	259, 1377
SinI	GGWCC	3 cut(s)	324, 337, 1078
SmiMI	CAYNNNNRTG	7 cut(s)	101, 715, 779, 929, 1269, 1340, 1433
SmlI	CTYRAG	5 cut(s)	413, 1613, 1830, 1880, 1928
SmoI	CTYRAG	5 cut(s)	413, 1613, 1830, 1880, 1928
SphI	GCATGC	1 cut(s)	836
SseBI	AGGCCT	2 cut(s)	731, 761
SspI	AATATT	1 cut(s)	1602
SspMI	CTAG	2 cut(s)	722, 1053
StuI	AGGCCT	2 cut(s)	731, 761
StyD4I	CCNGG	4 cut(s)	320, 654, 672, 972
StyI	CCWWGG	4 cut(s)	666, 756, 790, 1669
TaaI	ACNGT	6 cut(s)	91, 616, 1036, 1136, 1447, 1622
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	8 cut(s)	219, 348, 552, 566, 1202, 1340, 1605, 1815
TauI	GCSGC	8 cut(s)	117, 153, 207, 261, 279, 539, 603, 1457
TfiI	GAWTC	2 cut(s)	456, 1147
Tru1I	TTAA	3 cut(s)	443, 1242, 1929
Tru9I	TTAA	3 cut(s)	443, 1242, 1929
TscAI	CASTG	7 cut(s)	90, 1141, 1429, 1452, 1627, 1914, 1974
TseFI	GTSAC	5 cut(s)	223, 794, 1213, 1747, 1852
TseI	GCWGC	6 cut(s)	826, 829, 1168, 1361, 1836, 1933
Tsp45I	GTSAC	5 cut(s)	223, 794, 1213, 1747, 1852
TspDTI	ATGAA	9 cut(s)	902, 1287, 1394, 1478, 1506, 1515, 1523, 1644, 1707
TspGWI	ACGGA	1 cut(s)	205
TspRI	CASTG	7 cut(s)	90, 1141, 1429, 1452, 1627, 1914, 1974
Tth111I	GACNNNGTC	2 cut(s)	284, 1219
Vha464I	CTTAAG	1 cut(s)	1928
VpaK11BI	GGWCC	3 cut(s)	324, 337, 1078
XagI	CCTNNNNNAGG	1 cut(s)	2031
XapI	RAATTY	5 cut(s)	446, 479, 1015, 1304, 2003
XceI	RCATGY	5 cut(s)	583, 836, 1300, 1339, 1825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	1730
XspI	CTAG	2 cut(s)	722, 1053

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.