Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013399

Physical Location & Seq

Genomic Coordinates Reverse (-)

58622253 .. 58624615

Gene Structure 2363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51137

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1887 bp

ATGAGACACCGCCGCCACCTGAGACTGGTTCTGGCAATCCCCACGCGCCGCCACTACGCCACAAAATACACCGCCAAAGTAACCTCAACGTCCCCAACCGGCCGCACCCTCTCCGTCGAGGTGACCCCACCACCTCCCCTCCCCACCGACATCCGCGGCTACACTCTCCCCCGCCGCGACCTCGTCTGCAAAGCCACCCAAATCATCCTCCACCAATCCCGCTCCGCCACGTCGGACCCCTTCCTCGACCTCTCCGACTACCTCTCCTCCCTCTCCCTCTCCCTCACCCCCGCCGAAGCCTCCGAGATCCTCAAGTCCCTAAACGACCCCGACCTCGCCTTAAAATTCTTCCGATTCTGCCCCTCCCTTTCCCCCAAATTCCAACACGACGCCTTCAGCTGCAACCGCCTCCTCCTCATCCTCTCCAAGTCCGCCGCCCCCGCCCGCTTCGACCTCGCCCGCTCGATCGTCTCCGACATGCACCGCTCCAACATACGCGGCAACATCTCCACCGTCAATCTCCTCATCGGCCTCTTCGGCAACACCGACGACCTGGAAACCACCATGGGCCTGGTGAAGAAATGGAGCCTCAGCATGACCTCCTACACATACAAATGTCTAGTTCAGGCCTTCTTGCGATCCTACAATTCCACCAAGGCCTTCCAGTCCTACATGGAAATGCGTCGCCATGGTCACAAATTGGACATTTACTCTTACAATATGCTGCTGCATGCACTTGCCAAAGACGAAAAGGTTGAGCAGGCACACAAGGTGTTTGAAGATATGAAGAGGAAGGATTGCGAGCCGGATGAGTTTACATACACAATCATGATCAGAATGAGTGGGAAATTGGGTAAAGGGGATGAGTGTGCTCTTGCTAGGAGCAACATGGTTGATAAGGCGGTCCTTGTGTTTGCGAAAATGGTGGAAGCTGATTGTAGGCCGAATGAGTTTACTTACAGTGTGATTTTGAATCTTTTGGTTGTGCAAGGGCAGCTTGGAAGGTTGGATGAGGTGGTGGAGATGTCGAAGAGATATGTGACTAAGTCTATATACGCGTATCTTGTTAAGACGTTGAGCAAATTGGGTCATGATGATGAAGCCCACCGGCTGTTCTGCAACATGTGGAAATTCCATGACAAGGGGGATCGGGATGCGTACATGTCGATGTTAGAGAGTTTGTGTTCTGCAGGTAAAACCGCGGAGGCCGTTGATATGTTGAGTAACATTCATGAGAAAGGGGTATCCACTGACACTATGATGTATAACACAGTGTTGGCCGCGCTTGGGAGGTTGAAGCAAATATCAAATCTTCATGAAGTGTATGAAAAGATGAAACATGATGGCCCTGAACCGGATCTATTTACCTACAACATTCTGATTTCCAGCTTTGGTAGGGCTGGGAAGGTTGATGAGGCGATGACAATATTCGAACAGCTTGAGAACAGTGATTGTAAACCTGATATCGTATCTTACAATTCATTGATCAATTGCCTTGGGAAGAATGGTGATGTGGATGAAGCCCACATGAGGTTCAAGGAGATGCAGGAGAAAGGGTTCAGCCCTGATGTTGTCACCTACAGCACTCTAATCGAGTGCTTTGGCAAGACAGATAGGGTTGACATGGCGTGCAGGTTGTTCGATGACATGCTTGCTCAAGGCTGCTGTCCAAACATTGTCACCTACAACATCTTGCTTGATTGTCTTGAGAGGTGTGGGAGGACCGCCGAGGCAGTGGATTTGTATGCAAAACTGAAGCAGCAGGGTTTGACGCCGGATTGGATTACATATTCAGTGCTTGAACGACTGCAAAGTGGTTCTCATAGGAAATTCAGAGTCCGTAGGCAGAGTCCTATCACAGGTTGGGTTGTCAGCCCTATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009451 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097305 GO:1901360 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

628

Amino Acids

71.3

Weight (kDa)

8.5

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	201 - 248	1.5e-08	PPR repeat family
PPR_long	PF17177	207 - 291	2.3e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	226 - 283	2.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	231 - 263	5e-06	PPR repeat
PPR_2	PF13041	235 - 280	4.3e-17	PPR repeat family
PPR	PF01535	237 - 267	6.4e-06	PPR repeat
PPR_2	PF13041	291 - 326	5.2e-07	PPR repeat family
TPR_24	PF23276	387 - 479	2.8e-06	Fungal tetratrico peptide repeats
PPR_3	PF13812	407 - 465	8.2e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	418 - 464	5.5e-10	PPR repeat family
PPR_long	PF17177	440 - 602	2.8e-12	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	449 - 480	7.1e-11	PPR repeat
PPR_3	PF13812	451 - 502	7.8e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	452 - 499	3.1e-13	PPR repeat family
PPR	PF01535	455 - 485	4.5e-07	PPR repeat
TPR_24	PF23276	465 - 584	2e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	476 - 536	3.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	484 - 515	6.8e-10	PPR repeat
PPR_2	PF13041	487 - 535	7e-18	PPR repeat family
PPR	PF01535	490 - 520	2.5e-09	PPR repeat
PPR_3	PF13812	512 - 567	3.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	518 - 550	1.1e-09	PPR repeat
PPR_2	PF13041	522 - 569	2.5e-16	PPR repeat family
PPR	PF01535	525 - 555	3.7e-06	PPR repeat
PPR_3	PF13812	545 - 600	6.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	554 - 581	4.8e-07	PPR repeat
PPR_2	PF13041	557 - 600	4.4e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013399)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51965
fragaria_vesca	FvH4_6g32590
malus_domestica	MD09G1200200.v1.1
prunus_persica	Prupe.3G056800_v2.0.a1
pyrus_communis	pycom09g11780 pycom15g36760
rosa_chinensis	RchiOBHm_Chr2g0141041
rosa_laevigata	RLG00000019910
rosa_multiflora	Rmu_sc0004769.1_g000016 Rmu_sc0012897.1_g000006
rosa_roxburghii	Rroxscaffold_2G00104260
rosa_rugosa	Rorug02G0366300
rosa_samantha	Rh2AG417700 Rh2BG427600 Rh2CG404000 Rh2DG437100
rosa_wichuraiana	Rw2G034190 Rw2G034250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1181, 1623
AccBSI	CCGCTC	3 cut(s)	222, 462, 486
AccII	CGCG	7 cut(s)	46, 156, 177, 498, 1058, 1202, 1283
AclWI	GGATC	4 cut(s)	301, 633, 1155, 1365
AcoI	YGGCCR	2 cut(s)	100, 1278
AcsI	RAATTY	4 cut(s)	344, 377, 1130, 1829
AcuI	CTGAAG	2 cut(s)	379, 1775
AcyI	GRCGYC	2 cut(s)	390, 1772
AdeI	CACNNNGTG	1 cut(s)	772
AfaI	GTAC	1 cut(s)	1160
AfiI	CCNNNNNNNGG	6 cut(s)	25, 1141, 1287, 1354, 1530, 1859
AflIII	ACRYGT	3 cut(s)	1056, 1122, 1161
AgsI	TTSAA	5 cut(s)	779, 973, 1297, 1537, 1802
AjiI	CACGTC	1 cut(s)	231
AjnI	CCWGG	2 cut(s)	552, 570
AloI	GAACNNNNNNTCC	2 cut(s)	1541, 1573
AluBI	AGCT	5 cut(s)	399, 932, 997, 1389, 1438
AluI	AGCT	5 cut(s)	399, 932, 997, 1389, 1438
Alw21I	GWGCWC	1 cut(s)	874
Alw26I	GTCTC	2 cut(s)	16, 475
AlwI	GGATC	4 cut(s)	301, 633, 1155, 1365
AoxI	GGCC	9 cut(s)	100, 529, 568, 627, 657, 941, 1206, 1278, 1345
ApeKI	GCWGC	6 cut(s)	399, 724, 727, 994, 1662, 1759
ApoI	RAATTY	4 cut(s)	344, 377, 1130, 1829
Asp700I	GAANNNNTTC	1 cut(s)	1556
AspLEI	GCGC	2 cut(s)	48, 1285
AspS9I	GGNCC	5 cut(s)	235, 568, 904, 1346, 1722
AsuHPI	GGTGA	6 cut(s)	133, 277, 586, 1520, 1567, 1672
AsuII	TTCGAA	1 cut(s)	1431
AvaII	GGWCC	3 cut(s)	235, 904, 1722
Bbv12I	GWGCWC	1 cut(s)	874
BbvCI	CCTCAGC	1 cut(s)	590
BbvI	GCAGC	6 cut(s)	386, 711, 714, 1006, 1649, 1771
BccI	CCATC	1 cut(s)	1337
BceAI	ACGGC	1 cut(s)	1193
BcgI	CGANNNNNNTGC	4 cut(s)	1573, 1607, 1621, 1655
BciT130I	CCWGG	2 cut(s)	554, 572
BciVI	GTATCC	1 cut(s)	1255
BclI	TGATCA	2 cut(s)	831, 1485
BcoDI	GTCTC	2 cut(s)	16, 475
BfaI	CTAG	2 cut(s)	620, 879
BfmI	CTRYAG	2 cut(s)	1188, 1579
BfuAI	ACCTGC	2 cut(s)	1181, 1623
BfuI	GTATCC	1 cut(s)	1255
BglI	GCCNNNNNGGC	1 cut(s)	537
Bme1390I	CCNGG	2 cut(s)	554, 572
Bme18I	GGWCC	3 cut(s)	235, 904, 1722
BmgBI	CACGTC	1 cut(s)	231
BmgT120I	GGNCC	5 cut(s)	235, 568, 904, 1346, 1722
BmiI	GGNNCC	2 cut(s)	237, 587
BmrFI	CCNGG	2 cut(s)	554, 572
BmsI	GCATC	2 cut(s)	1144, 1533
Bpu10I	CCTNAGC	1 cut(s)	590
Bpu14I	TTCGAA	1 cut(s)	1431
BpuEI	CTTGAG	4 cut(s)	296, 1460, 1641, 1727
BsaHI	GRCGYC	2 cut(s)	390, 1772
BsaJI	CCNNGG	7 cut(s)	154, 564, 654, 688, 1200, 1495, 1728
BsaWI	WCCGGW	1 cut(s)	1354
BsaXI	ACNNNNNCTCC	8 cut(s)	123, 153, 248, 251, 278, 281, 1541, 1571
Bsc4I	CCNNNNNNNGG	6 cut(s)	25, 1141, 1287, 1354, 1530, 1859
Bse118I	RCCGGY	2 cut(s)	98, 1107
Bse1I	ACTGG	2 cut(s)	30, 664
BseBI	CCWGG	2 cut(s)	554, 572
BseDI	CCNNGG	7 cut(s)	154, 564, 654, 688, 1200, 1495, 1728
BseGI	GGATG	8 cut(s)	150, 204, 417, 814, 868, 1015, 1159, 1522
BseLI	CCNNNNNNNGG	6 cut(s)	25, 1141, 1287, 1354, 1530, 1859
BseMII	CTCAG	2 cut(s)	11, 604
BseNI	ACTGG	2 cut(s)	30, 664
BseRI	GAGGAG	4 cut(s)	256, 401, 404, 512
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	6 cut(s)	386, 711, 714, 1006, 1649, 1771
BseYI	CCCAGC	1 cut(s)	1400
BsgI	GTGCAG	1 cut(s)	1651
Bsh1236I	CGCG	7 cut(s)	46, 156, 177, 498, 1058, 1202, 1283
Bsh1285I	CGRYCG	2 cut(s)	103, 468
BshFI	GGCC	9 cut(s)	102, 531, 570, 629, 659, 943, 1208, 1280, 1347
BsiEI	CGRYCG	2 cut(s)	103, 468
BsiHKAI	GWGCWC	1 cut(s)	874
BsiSI	CCGG	5 cut(s)	99, 806, 1108, 1355, 1775
BslFI	GGGAC	2 cut(s)	76, 301
BslI	CCNNNNNNNGG	6 cut(s)	25, 1141, 1287, 1354, 1530, 1859
BsmAI	GTCTC	2 cut(s)	16, 475
BsmBI	CGTCTC	1 cut(s)	475
BsmFI	GGGAC	2 cut(s)	76, 301
BsnI	GGCC	9 cut(s)	102, 531, 570, 629, 659, 943, 1208, 1280, 1347
Bsp119I	TTCGAA	1 cut(s)	1431
Bsp1286I	GDGCHC	1 cut(s)	874
Bsp143I	GATC	7 cut(s)	306, 465, 638, 831, 1147, 1357, 1485
Bsp19I	CCATGG	2 cut(s)	564, 688
BspANI	GGCC	9 cut(s)	102, 531, 570, 629, 659, 943, 1208, 1280, 1347
BspCNI	CTCAG	2 cut(s)	12, 603
BspFNI	CGCG	7 cut(s)	46, 156, 177, 498, 1058, 1202, 1283
BspHI	TCATGA	4 cut(s)	828, 1090, 1231, 1315
BspLI	GGNNCC	2 cut(s)	237, 587
BspMAI	CTGCAG	1 cut(s)	1192
BspMI	ACCTGC	2 cut(s)	1181, 1623
BspPI	GGATC	4 cut(s)	301, 633, 1155, 1365
BspT104I	TTCGAA	1 cut(s)	1431
BsrBI	CCGCTC	3 cut(s)	222, 462, 486
BsrFI	RCCGGY	2 cut(s)	98, 1107
BsrI	ACTGG	2 cut(s)	30, 664
BssAI	RCCGGY	2 cut(s)	98, 1107
BssECI	CCNNGG	7 cut(s)	154, 564, 654, 688, 1200, 1495, 1728
BssMI	GATC	7 cut(s)	306, 465, 638, 831, 1147, 1357, 1485
BssNI	GRCGYC	2 cut(s)	390, 1772
BssT1I	CCWWGG	4 cut(s)	564, 654, 688, 1495
Bst2UI	CCWGG	2 cut(s)	554, 572
Bst4CI	ACNGT	4 cut(s)	514, 962, 1273, 1448
Bst6I	CTCTTC	3 cut(s)	539, 782, 1025
BstACI	GRCGYC	2 cut(s)	390, 1772
BstBI	TTCGAA	1 cut(s)	1431
BstC8I	GCNNGC	7 cut(s)	445, 460, 732, 762, 803, 1630, 1653
BstDEI	CTNAG	3 cut(s)	20, 590, 1044
BstDSI	CCRYGG	4 cut(s)	154, 564, 688, 1200
BstEII	GGTNACC	1 cut(s)	121
BstENI	CCTNNNNNAGG	1 cut(s)	1857
BstF5I	GGATG	8 cut(s)	150, 204, 417, 814, 868, 1015, 1159, 1522
BstFNI	CGCG	7 cut(s)	46, 156, 177, 498, 1058, 1202, 1283
BstHHI	GCGC	2 cut(s)	48, 1285
BstKTI	GATC	7 cut(s)	309, 468, 641, 834, 1150, 1360, 1488
BstMAI	GTCTC	2 cut(s)	16, 475
BstMBI	GATC	7 cut(s)	306, 465, 638, 831, 1147, 1357, 1485
BstMCI	CGRYCG	2 cut(s)	103, 468
BstMWI	GCNNNNNNNGC	4 cut(s)	405, 440, 537, 994
BstNI	CCWGG	2 cut(s)	554, 572
BstNSI	RCATGY	5 cut(s)	481, 734, 1126, 1165, 1651
BstPI	GGTNACC	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	552, 570
BstSFI	CTRYAG	2 cut(s)	1188, 1579
BstUI	CGCG	7 cut(s)	46, 156, 177, 498, 1058, 1202, 1283
BstV1I	GCAGC	6 cut(s)	386, 711, 714, 1006, 1649, 1771
BstX2I	RGATCY	2 cut(s)	306, 1357
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstYI	RGATCY	2 cut(s)	306, 1357
BstZI	CGGCCG	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	1255
BsuRI	GGCC	9 cut(s)	102, 531, 570, 629, 659, 943, 1208, 1280, 1347
BtgI	CCRYGG	4 cut(s)	154, 564, 688, 1200
BtgZI	GCGATG	1 cut(s)	1433
BtrI	CACGTC	1 cut(s)	231
BtsCI	GGATG	8 cut(s)	150, 204, 417, 814, 868, 1015, 1159, 1522
BtsI	GCAGTG	1 cut(s)	1740
BtsIMutI	CAGTG	6 cut(s)	967, 1248, 1278, 1453, 1740, 1800
BveI	ACCTGC	2 cut(s)	1181, 1623
Cac8I	GCNNGC	7 cut(s)	445, 460, 732, 762, 803, 1630, 1653
CciI	TCATGA	4 cut(s)	828, 1090, 1231, 1315
CfoI	GCGC	2 cut(s)	48, 1285
Cfr10I	RCCGGY	2 cut(s)	98, 1107
Cfr13I	GGNCC	5 cut(s)	235, 568, 904, 1346, 1722
Cfr42I	CCGCGG	2 cut(s)	157, 1203
CseI	GACGC	3 cut(s)	398, 671, 1780
Csp6I	GTAC	1 cut(s)	1159
CviQI	GTAC	1 cut(s)	1159
DdeI	CTNAG	3 cut(s)	20, 590, 1044
DpnI	GATC	7 cut(s)	308, 467, 640, 833, 1149, 1359, 1487
DpnII	GATC	7 cut(s)	306, 465, 638, 831, 1147, 1357, 1485
DraIII	CACNNNGTG	1 cut(s)	772
EaeI	YGGCCR	2 cut(s)	100, 1278
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	3 cut(s)	539, 782, 1025
EarI	CTCTTC	3 cut(s)	539, 782, 1025
EciI	GGCGGA	2 cut(s)	214, 421
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	4 cut(s)	564, 654, 688, 1495
Eco147I	AGGCCT	2 cut(s)	629, 659
Eco32I	GATATC	1 cut(s)	1465
Eco47I	GGWCC	3 cut(s)	235, 904, 1722
Eco52I	CGGCCG	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	379, 1775
Eco91I	GGTNACC	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	1857
EcoO65I	GGTNACC	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	552, 570
EcoRV	GATATC	1 cut(s)	1465
EcoT14I	CCWWGG	4 cut(s)	564, 654, 688, 1495
ErhI	CCWWGG	4 cut(s)	564, 654, 688, 1495
Esp3I	CGTCTC	1 cut(s)	475
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	2 cut(s)	76, 301
FauI	CCCGC	6 cut(s)	179, 227, 298, 448, 452, 467
FbaI	TGATCA	2 cut(s)	831, 1485
FokI	GGATG	8 cut(s)	137, 191, 404, 821, 875, 1022, 1166, 1529
FspBI	CTAG	2 cut(s)	620, 879
GlaI	GCGC	2 cut(s)	47, 1284
GsaI	CCCAGC	1 cut(s)	1404
HaeIII	GGCC	9 cut(s)	102, 531, 570, 629, 659, 943, 1208, 1280, 1347
HapII	CCGG	5 cut(s)	99, 806, 1108, 1355, 1775
HgaI	GACGC	3 cut(s)	398, 671, 1780
HhaI	GCGC	2 cut(s)	48, 1285
Hin1I	GRCGYC	2 cut(s)	390, 1772
Hin6I	GCGC	2 cut(s)	46, 1283
HinP1I	GCGC	2 cut(s)	46, 1283
HincII	GTYRAC	1 cut(s)	1621
HindII	GTYRAC	1 cut(s)	1621
HinfI	GANTC	4 cut(s)	354, 973, 1836, 1849
HpaII	CCGG	5 cut(s)	99, 806, 1108, 1355, 1775
HphI	GGTGA	6 cut(s)	133, 277, 586, 1520, 1567, 1672
Hpy166II	GTNNAC	4 cut(s)	816, 954, 1457, 1621
Hpy188I	TCNGA	8 cut(s)	235, 256, 304, 353, 475, 836, 1380, 1835
Hpy188III	TCNNGA	6 cut(s)	829, 1091, 1151, 1232, 1316, 1706
Hpy8I	GTNNAC	4 cut(s)	816, 954, 1457, 1621
Hpy99I	CGWCG	5 cut(s)	119, 235, 392, 551, 687
HpyAV	CCTTC	7 cut(s)	250, 403, 640, 670, 787, 996, 1399
HpyCH4III	ACNGT	4 cut(s)	514, 962, 1273, 1448
HpyCH4IV	ACGT	3 cut(s)	89, 230, 1073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	405, 440, 537, 994
HpyF3I	CTNAG	3 cut(s)	20, 590, 1044
HpySE526I	ACGT	3 cut(s)	89, 230, 1073
Hsp92I	GRCGYC	2 cut(s)	390, 1772
HspAI	GCGC	2 cut(s)	46, 1283
Ksp22I	TGATCA	2 cut(s)	831, 1485
KspI	CCGCGG	2 cut(s)	157, 1203
Kzo9I	GATC	7 cut(s)	306, 465, 638, 831, 1147, 1357, 1485
LmnI	GCTCC	4 cut(s)	227, 491, 585, 882
Lsp1109I	GCAGC	6 cut(s)	386, 711, 714, 1006, 1649, 1771
LweI	GCATC	2 cut(s)	1144, 1533
MaeI	CTAG	2 cut(s)	620, 879
MaeII	ACGT	3 cut(s)	89, 230, 1073
MaeIII	GTNAC	7 cut(s)	79, 121, 692, 1039, 1223, 1573, 1678
MalI	GATC	7 cut(s)	308, 467, 640, 833, 1149, 1359, 1487
MbiI	CCGCTC	3 cut(s)	222, 462, 486
MboI	GATC	7 cut(s)	306, 465, 638, 831, 1147, 1357, 1485
MboII	GAAGA	8 cut(s)	340, 526, 589, 791, 799, 1042, 1304, 1513
MfeI	CAATTG	1 cut(s)	1489
MflI	RGATCY	2 cut(s)	306, 1357
MhlI	GDGCHC	1 cut(s)	874
MluI	ACGCGT	1 cut(s)	1056
MlyI	GAGTC	2 cut(s)	1845, 1858
MmeI	TCCRAC	6 cut(s)	213, 279, 406, 498, 513, 987
MroXI	GAANNNNTTC	1 cut(s)	1556
MseI	TTAA	2 cut(s)	341, 1068
MslI	CAYNNNNRTG	6 cut(s)	613, 677, 827, 1095, 1166, 1259
MspA1I	CMGCKG	3 cut(s)	156, 399, 1202
MspI	CCGG	5 cut(s)	99, 806, 1108, 1355, 1775
MspR9I	CCNGG	2 cut(s)	554, 572
MunI	CAATTG	1 cut(s)	1489
MvaI	CCWGG	2 cut(s)	554, 572
MvnI	CGCG	7 cut(s)	46, 156, 177, 498, 1058, 1202, 1283
MwoI	GCNNNNNNNGC	4 cut(s)	405, 440, 537, 994
NcoI	CCATGG	2 cut(s)	564, 688
NdeII	GATC	7 cut(s)	306, 465, 638, 831, 1147, 1357, 1485
NlaIV	GGNNCC	2 cut(s)	237, 587
NmeAIII	GCCGAG	1 cut(s)	1753
NmuCI	GTSAC	5 cut(s)	121, 692, 1039, 1573, 1678
NspI	RCATGY	5 cut(s)	481, 734, 1126, 1165, 1651
NspV	TTCGAA	1 cut(s)	1431
PaeI	GCATGC	1 cut(s)	734
PagI	TCATGA	4 cut(s)	828, 1090, 1231, 1315
PceI	AGGCCT	2 cut(s)	629, 659
PciI	ACATGT	2 cut(s)	1122, 1161
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 543
PdmI	GAANNNNTTC	1 cut(s)	1556
PfeI	GAWTC	2 cut(s)	354, 973
PflFI	GACNNNGTC	2 cut(s)	182, 1045
Ple19I	CGATCG	1 cut(s)	468
PleI	GAGTC	2 cut(s)	1844, 1857
PpsI	GAGTC	2 cut(s)	1844, 1857
PscI	ACATGT	2 cut(s)	1122, 1161
Psp6I	CCWGG	2 cut(s)	552, 570
PspEI	GGTNACC	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	1400
PspGI	CCWGG	2 cut(s)	552, 570
PspN4I	GGNNCC	2 cut(s)	237, 587
PspPI	GGNCC	5 cut(s)	235, 568, 904, 1346, 1722
PstI	CTGCAG	1 cut(s)	1192
PsuI	RGATCY	2 cut(s)	306, 1357
PsyI	GACNNNGTC	2 cut(s)	182, 1045
PvuI	CGATCG	1 cut(s)	468
PvuII	CAGCTG	1 cut(s)	399
RsaI	GTAC	1 cut(s)	1160
RsaNI	GTAC	1 cut(s)	1159
RseI	CAYNNNNRTG	6 cut(s)	613, 677, 827, 1095, 1166, 1259
SacII	CCGCGG	2 cut(s)	157, 1203
SaqAI	TTAA	2 cut(s)	341, 1068
Sau3AI	GATC	7 cut(s)	306, 465, 638, 831, 1147, 1357, 1485
Sau96I	GGNCC	5 cut(s)	235, 568, 904, 1346, 1722
SchI	GAGTC	2 cut(s)	1845, 1858
ScrFI	CCNGG	2 cut(s)	554, 572
SduI	GDGCHC	1 cut(s)	874
SfaNI	GCATC	2 cut(s)	1144, 1533
SfcI	CTRYAG	2 cut(s)	1188, 1579
Sfr303I	CCGCGG	2 cut(s)	157, 1203
SfuI	TTCGAA	1 cut(s)	1431
SgrBI	CCGCGG	2 cut(s)	157, 1203
SinI	GGWCC	3 cut(s)	235, 904, 1722
SmiMI	CAYNNNNRTG	6 cut(s)	613, 677, 827, 1095, 1166, 1259
SmlI	CTYRAG	4 cut(s)	311, 1439, 1656, 1706
SmoI	CTYRAG	4 cut(s)	311, 1439, 1656, 1706
SphI	GCATGC	1 cut(s)	734
SseBI	AGGCCT	2 cut(s)	629, 659
SspI	AATATT	1 cut(s)	1428
SspMI	CTAG	2 cut(s)	620, 879
StuI	AGGCCT	2 cut(s)	629, 659
StyD4I	CCNGG	2 cut(s)	552, 570
StyI	CCWWGG	4 cut(s)	564, 654, 688, 1495
TaaI	ACNGT	4 cut(s)	514, 962, 1273, 1448
TaiI	ACGT	3 cut(s)	92, 233, 1076
TaqI	TCGA	9 cut(s)	117, 246, 450, 464, 1028, 1166, 1431, 1593, 1641
TauI	GCSGC	8 cut(s)	15, 51, 105, 159, 177, 437, 501, 1283
TfiI	GAWTC	2 cut(s)	354, 973
Tru1I	TTAA	2 cut(s)	341, 1068
Tru9I	TTAA	2 cut(s)	341, 1068
TscAI	CASTG	6 cut(s)	967, 1255, 1278, 1453, 1740, 1800
TseFI	GTSAC	5 cut(s)	121, 692, 1039, 1573, 1678
TseI	GCWGC	6 cut(s)	399, 724, 727, 994, 1662, 1759
Tsp45I	GTSAC	5 cut(s)	121, 692, 1039, 1573, 1678
TspDTI	ATGAA	9 cut(s)	800, 1113, 1220, 1304, 1332, 1341, 1349, 1470, 1533
TspGWI	ACGGA	2 cut(s)	103, 1829
TspRI	CASTG	6 cut(s)	967, 1255, 1278, 1453, 1740, 1800
Tth111I	GACNNNGTC	2 cut(s)	182, 1045
VpaK11BI	GGWCC	3 cut(s)	235, 904, 1722
XagI	CCTNNNNNAGG	1 cut(s)	1857
XapI	RAATTY	4 cut(s)	344, 377, 1130, 1829
XceI	RCATGY	5 cut(s)	481, 734, 1126, 1165, 1651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	1556
XspI	CTAG	2 cut(s)	620, 879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.