Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006784

Physical Location & Seq

Genomic Coordinates Forward (+)

10757634 .. 10764317

Gene Structure 6684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3015 bp

ATGCCTTCTGCGAAAGGAAAGAAGCATTCGAAGACCCAATCGAGGCTATCGAATTCTTCCCACAACTTCTCGTCAAATGGGTCGCTTGATTTCGAAGAAACAGAAGAGGGTTTTGCGAGCTTCATCGAGGAAGCTTCGATCAAATACCCATCTCTGATTGCTAAGTCTGCTTTCGTTGCCCGAGTCGCCGACGTTCAGGACGACCCCAAAAGCTGCAAAATTTGGCTCTCAGAGCCTTCCATGGTCGCCTCTTCCTTCACTCCTGGCTCCATTGTTTCGGTGTCGCTTCCGAGCTCGAAGAGTAGATATTCAGATGGGTTTCCTCTCTGTTCTTTAGCAGATGAATGTGCTAGAACTTTTGGGATTGGTTCTTGTGGGCAGTTGGCTAATGAAGCAGGGAACTACTTTGCTCTTGCTACAATTTTTCCATCTTCTAAGGTTACGAAGAATGAAGTGCTATTGTCATCAAATCTTTCAAATACAATTGGTTGTCCTCCATCAGGCAGGGTAATATTCATCCACTCTGTACAAAATCAGTTTGGAGCTGGTCTTCTGGGTAAGTCAGGAAAACCACGTAGCACCGGAGTTGATTGCCTCTCAGTATACGACTGCAACGAGTTAGTTTTGGAGATTGTTCCTTCTAATAATAGATTAACCATGAACAATACCTCTGTCAACATTTCCGCTGAAAAATCTTACCATTATTCTGAAAAGGGAATGGGTGCATCTCCTAAGACACCATTGAATCGATCAAGGCTAAGTGTGTCTAGTACTAGTCCAGTAACTTCACCTCTACGTGAGTCAGTAGCAGGTGTAACCATTCCCAATGTGTCATCTGTTAATTCTTTTGATGTTGAAGAGGTTTTAGGGGATGACAGTACCAAAAGACTTCTGCAGACATGTGCTACTACATGGTTGTATTCTCGCTGTCTACTTTGCGGAAATTTTGTCACCATCCCAATGCTCTCACAACTTTGTTTACTCCGAGTGATTGGTGCTAAAAGTTTGTCAAGCTGTGATGCTAATGATTTGCTAAATGAGGCTTCTAAAGTAGTGGGCTGTGAAAATGATGCTTTTCTAGTGAAGCGAGAAACAAAATTATCTTTCCATTTGCCATCAAACCAAGCATCTAAAACTCCACAGAGAAGAAATCTATCCAATTTGGAATGTAATGATCCTGCCGCTAATACAGGAGATAACATTTCAAGATTGGGGGGTCTTTGTAAAGAATATGCAGTTTTGAAGGACATCATATTTTCCTCCTCTATGGACACTTTGTCAAGTCTTGGTTTACGAACTACAAAGGGAGTGCTTCTTCATGGTCCTCCTGGTACGGGAAAGACTTCTTTGGCTCGATTATGTGCCCATGATGCTGGCATTAACTTTTTCTCTGTCAATGGACCTGAACTTGTGAGTCAATACTTTGGAGAAAGTGAGAAAGCTTTGCGAGAAGTTTTCGAATCAGCTAGCCAAGCTGCACCTTCTGTGGTATTCATTGATGAGCTGGATGCTATCGCACCTGCAAGGAAAGAAGGAGGTGAAGAGCTATCTCAAAGAATGGTTGCTACACTGTTGAATTTGATGGATGGTGTAAGTAGAACTGAAGGTGTACTTGTAATTGCTGCTACCAACAGGCCTGATAGCATTGAGCCTGCACTCAGACGACCTGGAAGACTTGACAGGGAAATTGAAATAGGTGTGCCATCTCCCAAGCAACGTTTGGAGATACTTCATTCTCTTATCGGCGAAATGGAGCAATCTCTTTCATACGAGCAAGTTCAACATCTTGCTATTGCTACACACGGTTTCGTGGGTGCTGATCTGGCTGCCCTTTGTAATGAAGCGGCCTTCAATTGTCTTAGACGTTATGTCAAATCGAAATACTCTGATGATTGTTTTCACCAAACATCTATTGCTGATGAAGATTGTTCTAACAGTCTAAATGTACCTGGTTTCTCAAAAGATACGACAGACATATCGATGGATTACTCAGATTCCAGATCTTCATCTGTCTCACATTTGGATTTTTCTTTAGAGACATCCTTGCATTTAAAGGGAACAATTGGAGATGGTGATAAATTTCTGAATGACATTGAAGGAGAATGTGTCTTGAAAGTGACTTTTGAAGATTTTGAAAAGGCCAGGATGAGAGTGAGGCCCAGTGCCATGCGGGAAGTAATACTTGAAGTTCCGAAAGTTAATTGGGAAGATGTTGGTGGTCAAAGGGAGGTAAAAAGTCAGTTAATGGAAGCCGTAATATGGCCTCAAAAACACCGGGAAGCATTCAAGCGTATCGGGACTCGGCCCCCGACAGGGGTCCTGATGTTTGGTCCTCCTGGATGCAGCAAAACCCTTATGGCTCGTGCTGTAGCTTCTGAGGCAGGGCTAAATTTCCTTGCTGTGAAGGGTCCAGAACTTTTTAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTGAAATCCCTGTTTGCGAAAGCAAGGGCTAATGCTCCAGCAATCATATTCTTCGATGAAATTGACGGGCTTGCTGCCATTCGTGGGAAGGAAAGTGACGGAGTTTCAGTTTCGGATAGGGTTATGAGTCAGCTGCTTGTTGAATTGGATGGTTTGCATGAAAGAGTTAATGTAACTGTTATTGCTGCTACAAATAGGCCAGACAAGATCGATAGTGCCCTTCTGAGGCCAGGACGCTTTGACCGGCTGCTATATGTGGGACCTCCAGATGAGACTGATCGGGAAGAGATATTTCATATCCATCTGCGCAAGATACCATGCAGTTCTGATGTCACAATATCTGAACTTGCTCGTCTTTCAGAAGGCTGTACCGGTGCTGATATATCGTTAATCTGCCGAGAAGCGGCCGTTGCAGCTATGGAGGAGAGCCTTGATGCCTCAGAAGTAAAAATGCAACATTTAAAAACTGCAATTAAACAAGTGAAGCCAACAGAAATTCATCTTTATCAAGAACTATCCGACAAATTTCAAAGACTTGTTCTTTCTGGCACAAAAGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA

Protein Analysis

1005

Amino Acids

109.03

Weight (kDa)

5.77

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_CI111	PF26429	41 - 176	1.6e-58	CI111 double-psi beta barrel domain
AAA_16	PF13191	433 - 540	5.1e-07	AAA ATPase domain
AAA	PF00004	437 - 566	1.4e-45	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	594 - 631	3.7e-12	AAA+ lid domain
AAA	PF00004	773 - 904	2.1e-41	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	927 - 972	9.2e-13	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56690
fragaria_vesca	FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040 FvH4_6g32040
malus_domestica	MD09G1206200.v1.1
prunus_persica	Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1 Prupe.3G062600_v2.0.a1
pyrus_communis	pycom09g12300
rosa_chinensis	RchiOBHm_Chr2g0139701
rosa_laevigata	RLG00000019827
rosa_multiflora	Rmu_co8172878.1_g000001 Rmu_sc0009714.1_g000008
rosa_roxburghii	Rroxscaffold_2G00105270
rosa_rugosa	Rorug02G0359300 Rorug04G0364300 Rorug04G0364400
rosa_samantha	Rh2AG397600 Rh2AG409100 Rh2BG419400 Rh4CG452300
rosa_wichuraiana	Rw2G033460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	800, 1528
Acc16I	TGCGCA	1 cut(s)	2759
Acc36I	ACCTGC	2 cut(s)	800, 1528
AccI	GTMKAC	2 cut(s)	603, 931
AciI	CCGC	6 cut(s)	684, 939, 1182, 1844, 2170, 2855
AclI	AACGTT	1 cut(s)	1717
AclWI	GGATC	1 cut(s)	1169
AcoI	YGGCCR	1 cut(s)	2856
AcsI	RAATTY	8 cut(s)	52, 219, 943, 1576, 2078, 2389, 2946, 2975
AcuI	CTGAAG	1 cut(s)	1623
AfaI	GTAC	7 cut(s)	528, 772, 880, 1333, 1611, 1947, 2821
AflIII	ACRYGT	1 cut(s)	899
AgeI	ACCGGT	1 cut(s)	2822
AhdI	GACNNNNNGTC	2 cut(s)	1276, 1868
AhlI	ACTAGT	1 cut(s)	773
AjnI	CCWGG	7 cut(s)	262, 1327, 1666, 1948, 2141, 2335, 2680
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	3 cut(s)	2017, 2030, 2717
AlwI	GGATC	1 cut(s)	1169
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	9 cut(s)	1634, 1845, 2139, 2156, 2261, 2303, 2648, 2678, 2856
ApoI	RAATTY	8 cut(s)	52, 219, 943, 1576, 2078, 2389, 2946, 2975
AsiGI	ACCGGT	1 cut(s)	2822
Asp700I	GAANNNNTTC	1 cut(s)	1342
AspLEI	GCGC	1 cut(s)	2760
AspS9I	GGNCC	8 cut(s)	1322, 1400, 2157, 2304, 2317, 2330, 2408, 2711
AsuC2I	CCSGG	1 cut(s)	2276
AsuHPI	GGTGA	6 cut(s)	780, 943, 1550, 1892, 2084, 2447
AsuII	TTCGAA	3 cut(s)	29, 93, 1458
AsuNHI	GCTAGC	1 cut(s)	1466
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	6 cut(s)	1322, 1400, 2317, 2330, 2408, 2711
BaeGI	GKGCMC	2 cut(s)	1366, 2671
BanII	GRGCYC	1 cut(s)	296
BauI	CACGAG	1 cut(s)	2361
BbsI	GAAGAC	3 cut(s)	38, 542, 1678
Bbv12I	GWGCWC	1 cut(s)	296
BceAI	ACGGC	2 cut(s)	2237, 2843
BciT130I	CCWGG	7 cut(s)	264, 1329, 1668, 1950, 2143, 2337, 2682
BcnI	CCSGG	1 cut(s)	2276
BcoDI	GTCTC	3 cut(s)	2017, 2030, 2717
BcuI	ACTAGT	1 cut(s)	773
BfaI	CTAG	5 cut(s)	351, 768, 774, 1079, 1467
BfmI	CTRYAG	2 cut(s)	893, 2367
BfuAI	ACCTGC	2 cut(s)	800, 1528
BglII	AGATCT	1 cut(s)	2000
BmcAI	AGTACT	1 cut(s)	772
Bme1390I	CCNGG	8 cut(s)	264, 1329, 1668, 1950, 2143, 2276, 2337, 2682
Bme18I	GGWCC	6 cut(s)	1322, 1400, 2317, 2330, 2408, 2711
BmeRI	GACNNNNNGTC	2 cut(s)	1276, 1868
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	8 cut(s)	1322, 1400, 2157, 2304, 2317, 2330, 2408, 2711
BmiI	GGNNCC	5 cut(s)	268, 2306, 2318, 2409, 2712
BmrFI	CCNGG	8 cut(s)	264, 1329, 1668, 1950, 2143, 2276, 2337, 2682
BmrI	ACTGGG	1 cut(s)	2154
BmsI	GCATC	8 cut(s)	734, 1009, 1060, 1136, 1360, 1498, 2330, 2875
BmtI	GCTAGC	1 cut(s)	1470
BmuI	ACTGGG	1 cut(s)	2154
BoxI	GACNNNNGTC	1 cut(s)	2315
BpiI	GAAGAC	3 cut(s)	38, 542, 1678
BpmI	CTGGAG	2 cut(s)	2472, 2700
Bpu14I	TTCGAA	3 cut(s)	29, 93, 1458
BpuMI	CCSGG	1 cut(s)	2276
Bsa29I	ATCGAT	3 cut(s)	748, 1979, 2661
BsaAI	YACGTR	2 cut(s)	575, 797
BsaBI	GATNNNNATC	1 cut(s)	2005
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	2 cut(s)	581, 2822
BsaXI	ACNNNNNCTCC	4 cut(s)	2091, 2121, 2544, 2574
Bse118I	RCCGGY	2 cut(s)	2694, 2822
Bse1I	ACTGG	2 cut(s)	779, 2160
Bse8I	GATNNNNATC	1 cut(s)	2005
BseBI	CCWGG	7 cut(s)	264, 1329, 1668, 1950, 2143, 2337, 2682
BseCI	ATCGAT	3 cut(s)	748, 1979, 2661
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	9 cut(s)	516, 877, 954, 1513, 1591, 2039, 2151, 2345, 2605
BseJI	GATNNNNATC	1 cut(s)	2005
BseMII	CTCAG	8 cut(s)	243, 612, 1672, 2004, 2367, 2433, 2666, 2904
BseNI	ACTGG	2 cut(s)	779, 2160
BseRI	GAGGAG	2 cut(s)	1252, 2888
BseSI	GKGCMC	2 cut(s)	1366, 2671
BseX3I	CGGCCG	1 cut(s)	2856
BsgI	GTGCAG	2 cut(s)	1461, 1638
Bsh1285I	CGRYCG	1 cut(s)	2859
BshFI	GGCC	9 cut(s)	1636, 1847, 2141, 2158, 2263, 2305, 2650, 2680, 2858
BshTI	ACCGGT	1 cut(s)	2822
BshVI	ATCGAT	3 cut(s)	748, 1979, 2661
BsiEI	CGRYCG	1 cut(s)	2859
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	4 cut(s)	582, 2275, 2695, 2823
BslFI	GGGAC	2 cut(s)	2311, 2724
BsmAI	GTCTC	3 cut(s)	2017, 2030, 2717
BsmFI	GGGAC	2 cut(s)	2311, 2724
BsmI	GAATGC	2 cut(s)	25, 2282
BsnI	GGCC	9 cut(s)	1636, 1847, 2141, 2158, 2263, 2305, 2650, 2680, 2858
BsoBI	CYCGRG	1 cut(s)	180
Bsp119I	TTCGAA	3 cut(s)	29, 93, 1458
Bsp1286I	GDGCHC	3 cut(s)	296, 1366, 2671
Bsp1407I	TGTACA	1 cut(s)	526
Bsp143I	GATC	7 cut(s)	138, 749, 1174, 1819, 2000, 2658, 2728
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	6 cut(s)	684, 939, 1182, 1844, 2170, 2855
BspANI	GGCC	9 cut(s)	1636, 1847, 2141, 2158, 2263, 2305, 2650, 2680, 2858
BspCNI	CTCAG	8 cut(s)	242, 611, 1671, 2003, 2368, 2434, 2667, 2903
BspDI	ATCGAT	3 cut(s)	748, 1979, 2661
BspLI	GGNNCC	5 cut(s)	268, 2306, 2318, 2409, 2712
BspMAI	CTGCAG	1 cut(s)	897
BspMI	ACCTGC	2 cut(s)	800, 1528
BspOI	GCTAGC	1 cut(s)	1470
BspPI	GGATC	1 cut(s)	1169
BspQI	GCTCTTC	1 cut(s)	1536
BspT104I	TTCGAA	3 cut(s)	29, 93, 1458
BsrFI	RCCGGY	2 cut(s)	2694, 2822
BsrGI	TGTACA	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	779, 2160
BssAI	RCCGGY	2 cut(s)	2694, 2822
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	7 cut(s)	138, 749, 1174, 1819, 2000, 2658, 2728
BssNAI	GTATAC	1 cut(s)	604
BssSI	CACGAG	1 cut(s)	2361
BssT1I	CCWWGG	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	604
Bst2BI	CACGAG	1 cut(s)	2361
Bst2UI	CCWGG	7 cut(s)	264, 1329, 1668, 1950, 2143, 2337, 2682
Bst4CI	ACNGT	5 cut(s)	878, 1572, 1805, 1937, 2629
Bst6I	CTCTTC	6 cut(s)	99, 256, 293, 852, 1536, 2730
BstAUI	TGTACA	1 cut(s)	526
BstBAI	YACGTR	2 cut(s)	575, 797
BstBI	TTCGAA	3 cut(s)	29, 93, 1458
BstC8I	GCNNGC	5 cut(s)	118, 1375, 1468, 1653, 2523
BstDSI	CCRYGG	1 cut(s)	240
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	9 cut(s)	516, 877, 954, 1513, 1591, 2039, 2151, 2345, 2605
BstHHI	GCGC	1 cut(s)	2760
BstKTI	GATC	7 cut(s)	141, 752, 1177, 1822, 2003, 2661, 2731
BstMAI	GTCTC	3 cut(s)	2017, 2030, 2717
BstMBI	GATC	7 cut(s)	138, 749, 1174, 1819, 2000, 2658, 2728
BstMCI	CGRYCG	1 cut(s)	2859
BstNI	CCWGG	7 cut(s)	264, 1329, 1668, 1950, 2143, 2337, 2682
BstNSI	RCATGY	1 cut(s)	903
BstPAI	GACNNNNGTC	1 cut(s)	2315
BstSCI	CCNGG	8 cut(s)	262, 1327, 1666, 1948, 2141, 2274, 2335, 2680
BstSFI	CTRYAG	2 cut(s)	893, 2367
BstSLI	GKGCMC	2 cut(s)	1366, 2671
BstV2I	GAAGAC	3 cut(s)	38, 542, 1678
BstX2I	RGATCY	1 cut(s)	2000
BstXI	CCANNNNNNTGG	1 cut(s)	1373
BstYI	RGATCY	1 cut(s)	2000
BstZ17I	GTATAC	1 cut(s)	604
BstZI	CGGCCG	1 cut(s)	2856
Bsu15I	ATCGAT	3 cut(s)	748, 1979, 2661
BsuRI	GGCC	9 cut(s)	1636, 1847, 2141, 2158, 2263, 2305, 2650, 2680, 2858
BsuTUI	ATCGAT	3 cut(s)	748, 1979, 2661
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	9 cut(s)	516, 877, 954, 1513, 1591, 2039, 2151, 2345, 2605
BtsIMutI	CAGTG	2 cut(s)	1568, 2167
BveI	ACCTGC	2 cut(s)	800, 1528
Cac8I	GCNNGC	5 cut(s)	118, 1375, 1468, 1653, 2523
CfoI	GCGC	1 cut(s)	2760
Cfr10I	RCCGGY	2 cut(s)	2694, 2822
Cfr13I	GGNCC	8 cut(s)	1322, 1400, 2157, 2304, 2317, 2330, 2408, 2711
ClaI	ATCGAT	3 cut(s)	748, 1979, 2661
CseI	GACGC	1 cut(s)	2694
CsiI	ACCWGGT	1 cut(s)	1948
Csp6I	GTAC	7 cut(s)	527, 771, 879, 1332, 1610, 1946, 2820
CspAI	ACCGGT	1 cut(s)	2822
CviAII	CATG	9 cut(s)	241, 658, 900, 912, 1319, 1367, 2167, 2609, 2769
CviQI	GTAC	7 cut(s)	527, 771, 879, 1332, 1610, 1946, 2820
DpnI	GATC	7 cut(s)	140, 751, 1176, 1821, 2002, 2660, 2730
DpnII	GATC	7 cut(s)	138, 749, 1174, 1819, 2000, 2658, 2728
DraI	TTTAAA	2 cut(s)	2052, 2913
DriI	GACNNNNNGTC	2 cut(s)	1276, 1868
EaeI	YGGCCR	1 cut(s)	2856
EagI	CGGCCG	1 cut(s)	2856
Eam1104I	CTCTTC	6 cut(s)	99, 256, 293, 852, 1536, 2730
Eam1105I	GACNNNNNGTC	2 cut(s)	1276, 1868
EarI	CTCTTC	6 cut(s)	99, 256, 293, 852, 1536, 2730
Ecl136II	GAGCTC	1 cut(s)	294
EclXI	CGGCCG	1 cut(s)	2856
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	1636
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	6 cut(s)	1322, 1400, 2317, 2330, 2408, 2711
Eco52I	CGGCCG	1 cut(s)	2856
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	1623
Eco88I	CYCGRG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	294
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoO109I	RGGNCCY	2 cut(s)	2317, 2711
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	7 cut(s)	262, 1327, 1666, 1948, 2141, 2335, 2680
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	9 cut(s)	244, 661, 903, 915, 1322, 1370, 2170, 2612, 2772
FalI	AAGNNNNNCTT	4 cut(s)	1596, 1628, 2166, 2198
FaqI	GGGAC	2 cut(s)	2311, 2724
FatI	CATG	9 cut(s)	240, 657, 899, 911, 1318, 1366, 2166, 2608, 2768
FauI	CCCGC	1 cut(s)	2163
FblI	GTMKAC	2 cut(s)	603, 931
FokI	GGATG	9 cut(s)	503, 884, 941, 1520, 1598, 2026, 2158, 2352, 2612
FriOI	GRGCYC	1 cut(s)	296
FspBI	CTAG	5 cut(s)	351, 768, 774, 1079, 1467
FspI	TGCGCA	1 cut(s)	2759
GlaI	GCGC	1 cut(s)	2759
GsuI	CTGGAG	2 cut(s)	2472, 2700
HaeIII	GGCC	9 cut(s)	1636, 1847, 2141, 2158, 2263, 2305, 2650, 2680, 2858
HapII	CCGG	4 cut(s)	582, 2275, 2695, 2823
HgaI	GACGC	1 cut(s)	2694
HhaI	GCGC	1 cut(s)	2760
Hin1II	CATG	9 cut(s)	244, 661, 903, 915, 1322, 1370, 2170, 2612, 2772
Hin6I	GCGC	1 cut(s)	2758
HinP1I	GCGC	1 cut(s)	2758
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HindIII	AAGCTT	2 cut(s)	132, 1440
HinfI	GANTC	9 cut(s)	183, 745, 800, 1414, 1460, 1994, 2299, 2438, 2578
HpaII	CCGG	4 cut(s)	582, 2275, 2695, 2823
HphI	GGTGA	6 cut(s)	780, 943, 1550, 1892, 2084, 2447
Hpy166II	GTNNAC	6 cut(s)	604, 676, 932, 980, 1292, 1610
Hpy8I	GTNNAC	6 cut(s)	604, 676, 932, 980, 1292, 1610
Hpy99I	CGWCG	1 cut(s)	194
HpyCH4III	ACNGT	5 cut(s)	878, 1572, 1805, 1937, 2629
HpyCH4IV	ACGT	5 cut(s)	192, 574, 796, 1717, 1864
HpySE526I	ACGT	5 cut(s)	192, 574, 796, 1717, 1864
Hsp92II	CATG	9 cut(s)	244, 661, 903, 915, 1322, 1370, 2170, 2612, 2772
HspAI	GCGC	1 cut(s)	2758
Kzo9I	GATC	7 cut(s)	138, 749, 1174, 1819, 2000, 2658, 2728
LguI	GCTCTTC	1 cut(s)	1536
LmnI	GCTCC	4 cut(s)	272, 542, 1753, 2491
LweI	GCATC	8 cut(s)	734, 1009, 1060, 1136, 1360, 1498, 2330, 2875
MabI	ACCWGGT	1 cut(s)	1948
MaeI	CTAG	5 cut(s)	351, 768, 774, 1079, 1467
MaeII	ACGT	5 cut(s)	192, 574, 796, 1717, 1864
MaeIII	GTNAC	8 cut(s)	439, 781, 814, 949, 2116, 2546, 2623, 2782
MalI	GATC	7 cut(s)	140, 751, 1176, 1821, 2002, 2660, 2730
MboI	GATC	7 cut(s)	138, 749, 1174, 1819, 2000, 2658, 2728
MfeI	CAATTG	3 cut(s)	483, 1852, 2061
MflI	RGATCY	1 cut(s)	2000
MhlI	GDGCHC	3 cut(s)	296, 1366, 2671
MlyI	GAGTC	5 cut(s)	192, 809, 1423, 2293, 2587
MmeI	TCCRAC	1 cut(s)	2994
MroXI	GAANNNNTTC	1 cut(s)	1342
MslI	CAYNNNNRTG	2 cut(s)	959, 1979
MspA1I	CMGCKG	2 cut(s)	686, 2584
MspI	CCGG	4 cut(s)	582, 2275, 2695, 2823
MspR9I	CCNGG	8 cut(s)	264, 1329, 1668, 1950, 2143, 2276, 2337, 2682
MunI	CAATTG	3 cut(s)	483, 1852, 2061
Mva1269I	GAATGC	2 cut(s)	25, 2282
MvaI	CCWGG	7 cut(s)	264, 1329, 1668, 1950, 2143, 2337, 2682
NciI	CCSGG	1 cut(s)	2276
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	7 cut(s)	138, 749, 1174, 1819, 2000, 2658, 2728
NheI	GCTAGC	1 cut(s)	1466
NlaIII	CATG	9 cut(s)	244, 661, 903, 915, 1322, 1370, 2170, 2612, 2772
NlaIV	GGNNCC	5 cut(s)	268, 2306, 2318, 2409, 2712
NmeAIII	GCCGAG	2 cut(s)	2281, 2873
NmuCI	GTSAC	4 cut(s)	949, 2116, 2546, 2782
NsbI	TGCGCA	1 cut(s)	2759
NspI	RCATGY	1 cut(s)	903
NspV	TTCGAA	3 cut(s)	29, 93, 1458
PaqCI	CACCTGC	2 cut(s)	800, 1528
PceI	AGGCCT	1 cut(s)	1636
PciI	ACATGT	1 cut(s)	899
PciSI	GCTCTTC	1 cut(s)	1536
PcsI	WCGNNNNNNNCGW	3 cut(s)	47, 198, 612
PctI	GAATGC	2 cut(s)	25, 2282
PdmI	GAANNNNTTC	1 cut(s)	1342
PfeI	GAWTC	4 cut(s)	745, 1460, 1994, 2438
PfoI	TCCNGGA	1 cut(s)	2335
PinAI	ACCGGT	1 cut(s)	2822
PleI	GAGTC	5 cut(s)	191, 808, 1422, 2293, 2586
PpsI	GAGTC	5 cut(s)	191, 808, 1422, 2293, 2586
Ppu21I	YACGTR	2 cut(s)	575, 797
PpuMI	RGGWCCY	2 cut(s)	2317, 2711
PscI	ACATGT	1 cut(s)	899
PshAI	GACNNNNGTC	1 cut(s)	2315
Psp124BI	GAGCTC	1 cut(s)	296
Psp1406I	AACGTT	1 cut(s)	1717
Psp5II	RGGWCCY	2 cut(s)	2317, 2711
Psp6I	CCWGG	7 cut(s)	262, 1327, 1666, 1948, 2141, 2335, 2680
PspGI	CCWGG	7 cut(s)	262, 1327, 1666, 1948, 2141, 2335, 2680
PspN4I	GGNNCC	5 cut(s)	268, 2306, 2318, 2409, 2712
PspPI	GGNCC	8 cut(s)	1322, 1400, 2157, 2304, 2317, 2330, 2408, 2711
PspPPI	RGGWCCY	2 cut(s)	2317, 2711
PstI	CTGCAG	1 cut(s)	897
PsuI	RGATCY	1 cut(s)	2000
PvuII	CAGCTG	1 cut(s)	2584
RsaI	GTAC	7 cut(s)	528, 772, 880, 1333, 1611, 1947, 2821
RsaNI	GTAC	7 cut(s)	527, 771, 879, 1332, 1610, 1946, 2820
RseI	CAYNNNNRTG	2 cut(s)	959, 1979
SacI	GAGCTC	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	1536
Sau3AI	GATC	7 cut(s)	138, 749, 1174, 1819, 2000, 2658, 2728
Sau96I	GGNCC	8 cut(s)	1322, 1400, 2157, 2304, 2317, 2330, 2408, 2711
ScaI	AGTACT	1 cut(s)	772
SchI	GAGTC	5 cut(s)	192, 809, 1423, 2293, 2587
ScrFI	CCNGG	8 cut(s)	264, 1329, 1668, 1950, 2143, 2276, 2337, 2682
SduI	GDGCHC	3 cut(s)	296, 1366, 2671
SexAI	ACCWGGT	1 cut(s)	1948
SfaNI	GCATC	8 cut(s)	734, 1009, 1060, 1136, 1360, 1498, 2330, 2875
SfcI	CTRYAG	2 cut(s)	893, 2367
SfuI	TTCGAA	3 cut(s)	29, 93, 1458
SinI	GGWCC	6 cut(s)	1322, 1400, 2317, 2330, 2408, 2711
SmiMI	CAYNNNNRTG	2 cut(s)	959, 1979
SpeI	ACTAGT	1 cut(s)	773
SseBI	AGGCCT	1 cut(s)	1636
SsiI	CCGC	6 cut(s)	684, 939, 1182, 1844, 2170, 2855
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	5 cut(s)	351, 768, 774, 1079, 1467
SstI	GAGCTC	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	1636
StyD4I	CCNGG	8 cut(s)	262, 1327, 1666, 1948, 2141, 2274, 2335, 2680
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	5 cut(s)	878, 1572, 1805, 1937, 2629
TaiI	ACGT	5 cut(s)	195, 577, 799, 1720, 1867
TatI	WGTACW	3 cut(s)	526, 770, 1609
TauI	GCSGC	3 cut(s)	1184, 1847, 2858
TfiI	GAWTC	4 cut(s)	745, 1460, 1994, 2438
TscAI	CASTG	2 cut(s)	1575, 2167
TseFI	GTSAC	4 cut(s)	949, 2116, 2546, 2782
Tsp45I	GTSAC	4 cut(s)	949, 2116, 2546, 2782
TspGWI	ACGGA	1 cut(s)	2565
TspRI	CASTG	2 cut(s)	1575, 2167
VpaK11BI	GGWCC	6 cut(s)	1322, 1400, 2317, 2330, 2408, 2711
XagI	CCTNNNNNAGG	1 cut(s)	498
XapI	RAATTY	8 cut(s)	52, 219, 943, 1576, 2078, 2389, 2946, 2975
XceI	RCATGY	1 cut(s)	903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1717
XmiI	GTMKAC	2 cut(s)	603, 931
XmnI	GAANNNNTTC	1 cut(s)	1342
XspI	CTAG	5 cut(s)	351, 768, 774, 1079, 1467
ZrmI	AGTACT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.