pycom09g13290

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0010876
Physical Location & Seq
Forward (+)
11964707 .. 11967759
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 711 bp
ATGGTGCCGGCCTTTATTAGTGTTTGTAAGGGGCACATAGTCCCCACTTTTGCCTCTCATGTGACCGACCAACTAAGTCACTTAAAACTGTATACAAAAATCCCATTTCCCACCAATCAGCAGTTGATCCAAACAAGGAAAATAACACACCCAAATTGCTCAAACCTCAAAACCCAAATGGCCAAAGAAGGTTTAGGGCTTGAACTTACAGAGCTGCGGTTGGGATTGTCTAGTGGTCCAATTTTAGTGGACAAAAACGAGAAGAAAAGGGTGTTTTCAAAGATTGACGGTGGAGATGGCCGGAATAGTACCACGCCTGGTGACTGCCGGAAAAGTCAGACAAAGAATCAGGTTGTGGGGTGGCCTCCATTGTGTTCATACAGAATGAAGATTAATGGCTTGAATGAGACGTCGAAAATGTACGTCAAAGTTAGCATGGATGGAGCACCTTTTCTTCGTAAAATTGACTTGACCATGCACAAGGAGTATGCAGATCTTGCTCTCGCGTTGGAGAAGTTATTTGGTTGCTATGGCATCGGCGAGGTGTTGAAAAATGCAGACAACTGTGAATTTACACCCATTTATGAAGACAAAGATGGAGACTGGATGCTAGTGGGAGACGTTCCTTGGGAGATGTTTATTAAGTCATGCAAGAGGCTTAGGATCATGAAGAGATCGGATGCCAAGGGAACGATGGAAGAGGAGCCATAA

Protein Analysis

237

Amino Acids

26.57

Weight (kDa)

8.87

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 104 - 230 2.5e-45 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15580 AT1G52830 AT3G15540
fragaria_vesca FvH4_6g30860
malus_domestica MD17G1198100.v1.1
prunus_persica Prupe.3G074800_v2.0.a1
pyrus_communis pycom09g13290 pycom17g20300
rosa_chinensis RchiOBHm_Chr2g0137311 RchiOBHm_Chr2g0137321
rosa_laevigata RLG00000019650
rosa_multiflora Rmu_sc0010947.1_g000009
rosa_roxburghii Rroxscaffold_2G00107210
rosa_rugosa Rorug02G0341100 Rorug02G0341100 Rorug02G0341100
rosa_samantha Rh2AG389300 Rh2BG397200 Rh2DG412100
rosa_wichuraiana Rw2G031920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 92
AccII CGCG 1 cut(s) 506
AciI CCGC 1 cut(s) 217
AclWI GGATC 2 cut(s) 121, 671
AcoI YGGCCR 2 cut(s) 180, 298
AcsI RAATTY 1 cut(s) 569
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 2 cut(s) 310, 422
AgsI TTSAA 4 cut(s) 203, 279, 403, 550
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 3 cut(s) 401, 594, 612
AlwI GGATC 2 cut(s) 121, 671
AoxI GGCC 4 cut(s) 9, 180, 298, 362
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 569
AseI ATTAAT 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 332
AvaII GGWCC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 36
BalI TGGCCA 1 cut(s) 182
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 448
BbvI GCAGC 1 cut(s) 201
BccI CCATC 4 cut(s) 290, 434, 590, 688
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 3 cut(s) 401, 594, 612
BfaI CTAG 2 cut(s) 231, 611
BglII AGATCT 1 cut(s) 493
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 6, 705
BmrFI CCNGG 1 cut(s) 318
BmsI GCATC 3 cut(s) 543, 597, 670
BpiI GAAGAC 1 cut(s) 594
Bpu10I CCTNAGC 1 cut(s) 659
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 626, 684
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 608
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 626, 684
BseGI GGATG 3 cut(s) 445, 612, 685
BseNI ACTGG 1 cut(s) 608
BseSI GKGCMC 1 cut(s) 36
BseXI GCAGC 1 cut(s) 201
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 4 cut(s) 11, 182, 300, 364
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 3 cut(s) 8, 301, 328
BslFI GGGAC 1 cut(s) 26
BsmAI GTCTC 3 cut(s) 401, 594, 612
BsmBI CGTCTC 2 cut(s) 401, 612
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 4 cut(s) 11, 182, 300, 364
Bsp1286I GDGCHC 2 cut(s) 36, 448
Bsp143I GATC 4 cut(s) 126, 493, 663, 674
BspACI CCGC 1 cut(s) 217
BspANI GGCC 4 cut(s) 11, 182, 300, 364
BspFNI CGCG 1 cut(s) 506
BspHI TCATGA 1 cut(s) 666
BspLI GGNNCC 2 cut(s) 6, 705
BspPI GGATC 2 cut(s) 121, 671
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 7
BsrI ACTGG 1 cut(s) 608
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 626, 684
BssMI GATC 4 cut(s) 126, 493, 663, 674
BssNAI GTATAC 1 cut(s) 93
BssNI GRCGYC 1 cut(s) 410
BssT1I CCWWGG 2 cut(s) 626, 684
Bst1107I GTATAC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 90, 290, 566
Bst6I CTCTTC 2 cut(s) 665, 693
BstACI GRCGYC 1 cut(s) 410
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 74, 659
BstF5I GGATG 3 cut(s) 445, 612, 685
BstFNI CGCG 1 cut(s) 506
BstKTI GATC 4 cut(s) 129, 496, 666, 677
BstMAI GTCTC 3 cut(s) 401, 594, 612
BstMBI GATC 4 cut(s) 126, 493, 663, 674
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSLI GKGCMC 1 cut(s) 36
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 594
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BstZ17I GTATAC 1 cut(s) 93
BsuRI GGCC 4 cut(s) 11, 182, 300, 364
BtsCI GGATG 3 cut(s) 445, 612, 685
Cac8I GCNNGC 1 cut(s) 9
CciI TCATGA 1 cut(s) 666
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 309, 421
CspCI CAANNNNNGTGG 2 cut(s) 228, 263
CviAII CATG 5 cut(s) 59, 436, 475, 648, 667
CviJI RGCY 9 cut(s) 11, 182, 199, 214, 300, 364, 399, 658, 706
CviKI_1 RGCY 9 cut(s) 11, 182, 199, 214, 300, 364, 399, 658, 706
CviQI GTAC 2 cut(s) 309, 421
DdeI CTNAG 2 cut(s) 74, 659
DpnI GATC 4 cut(s) 128, 495, 665, 676
DpnII GATC 4 cut(s) 126, 493, 663, 674
EaeI YGGCCR 2 cut(s) 180, 298
Eam1104I CTCTTC 2 cut(s) 665, 693
EarI CTCTTC 2 cut(s) 665, 693
Eco130I CCWWGG 2 cut(s) 626, 684
Eco47I GGWCC 1 cut(s) 236
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 2 cut(s) 626, 684
ErhI CCWWGG 2 cut(s) 626, 684
Esp3I CGTCTC 2 cut(s) 401, 612
FaeI CATG 5 cut(s) 62, 439, 478, 651, 670
FaqI GGGAC 1 cut(s) 26
FatI CATG 5 cut(s) 58, 435, 474, 647, 666
FblI GTMKAC 1 cut(s) 92
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 3 cut(s) 452, 619, 692
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 2 cut(s) 231, 611
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 4 cut(s) 11, 182, 300, 364
HapII CCGG 3 cut(s) 8, 301, 328
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 5 cut(s) 62, 439, 478, 651, 670
HinfI GANTC 1 cut(s) 346
HpaII CCGG 3 cut(s) 8, 301, 328
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 93, 250
Hpy188I TCNGA 2 cut(s) 339, 679
Hpy188III TCNNGA 1 cut(s) 667
Hpy8I GTNNAC 2 cut(s) 93, 250
Hpy99I CGWCG 1 cut(s) 415
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 90, 290, 566
HpyCH4IV ACGT 3 cut(s) 410, 423, 621
HpyCH4V TGCA 4 cut(s) 478, 491, 557, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 2 cut(s) 74, 659
HpySE526I ACGT 3 cut(s) 410, 423, 621
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 5 cut(s) 62, 439, 478, 651, 670
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Kzo9I GATC 4 cut(s) 126, 493, 663, 674
LmnI GCTCC 2 cut(s) 443, 703
LpnPI CCDG 7 cut(s) 21, 303, 314, 330, 335, 341, 589
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 3 cut(s) 543, 597, 670
MaeI CTAG 2 cut(s) 231, 611
MaeII ACGT 3 cut(s) 410, 423, 621
MaeIII GTNAC 3 cut(s) 61, 77, 320
MalI GATC 4 cut(s) 128, 495, 665, 676
MboI GATC 4 cut(s) 126, 493, 663, 674
MboII GAAGA 6 cut(s) 274, 400, 446, 599, 682, 710
MflI RGATCY 1 cut(s) 493
MhlI GDGCHC 2 cut(s) 36, 448
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 4 cut(s) 154, 240, 462, 569
MluNI TGGCCA 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 6 cut(s) 64, 176, 375, 535, 648, 694
Mox20I TGGCCA 1 cut(s) 182
MroNI GCCGGC 1 cut(s) 7
MscI TGGCCA 1 cut(s) 182
MseI TTAA 3 cut(s) 83, 393, 642
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 3 cut(s) 8, 301, 328
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 1 cut(s) 497
NaeI GCCGGC 1 cut(s) 9
NdeII GATC 4 cut(s) 126, 493, 663, 674
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 5 cut(s) 62, 439, 478, 651, 670
NlaIV GGNNCC 2 cut(s) 6, 705
NmuCI GTSAC 3 cut(s) 61, 77, 320
PagI TCATGA 1 cut(s) 666
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 1 cut(s) 216
PshBI ATTAAT 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 6, 705
PspPI GGNCC 1 cut(s) 236
PsuI RGATCY 1 cut(s) 493
RsaI GTAC 2 cut(s) 310, 422
RsaNI GTAC 2 cut(s) 309, 421
SaqAI TTAA 3 cut(s) 83, 393, 642
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 4 cut(s) 126, 493, 663, 674
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 2 cut(s) 36, 448
SetI ASST 9 cut(s) 168, 193, 216, 354, 413, 426, 451, 546, 624
SfaNI GCATC 3 cut(s) 543, 597, 670
SinI GGWCC 1 cut(s) 236
Sse9I AATT 4 cut(s) 154, 240, 462, 569
SsiI CCGC 1 cut(s) 217
SspMI CTAG 2 cut(s) 231, 611
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 2 cut(s) 626, 684
TaaI ACNGT 3 cut(s) 90, 290, 566
TaiI ACGT 3 cut(s) 413, 426, 624
TaqI TCGA 1 cut(s) 413
TaqII GACCGA 1 cut(s) 80
TasI AATT 4 cut(s) 154, 240, 462, 569
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 83, 393, 642
Tru9I TTAA 3 cut(s) 83, 393, 642
TseFI GTSAC 3 cut(s) 61, 77, 320
TseI GCWGC 1 cut(s) 214
Tsp45I GTSAC 3 cut(s) 61, 77, 320
TspDTI ATGAA 4 cut(s) 366, 401, 600, 683
VpaK11BI GGWCC 1 cut(s) 236
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 1 cut(s) 569
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XmiI GTMKAC 1 cut(s) 92
XspI CTAG 2 cut(s) 231, 611
ZraI GACGTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.