Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003401

Physical Location & Seq

Genomic Coordinates Forward (+)

14628744 .. 14630767

Gene Structure 2024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGATTCTCGTCAACCATCCTAGTGTCCTTAAATCACATTGTTCCTTTGTTAGTAATCATAATTTGTGGGTTGTCATGTCGTTCATGGTTAGGGATTCTTGTCTTCACATTTTGAAGGCATCATATCCGAATGGTTTTGAGGAAGATGTTATAGCCACTATATTACGTGAGATTTTGAAGGGTTTAAAGTATCTTCATCATCATGGTCATATTCATCGAGATGTCAAAGTTATGGAGCAATTACATGATTATGATTTCAAGTCAGTTTGTTATCTATTTAAACTGACTGCTAGTCATACTCTTTTATTCCTTTTTAAGAAAAACAAAATTCTTATGCAGCATGGAGTTAAAGTTTGGTTGTCATTTCCATGTAGGGCGGATATTTGGTCTTTTGGTATAACTGCATTGGAGCTTGCCCATGGTCATGCTCTTTTCTCAAAGTATCCTCCAATGAAGGTACTGCTGATGACCTTGCAAAATACGCCACCTAGCCATGATTATGAAAGGGATAAGAAGTTTTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAGGATCCTTCAAAACAACCTTCTGCCAAGAAGTTATTGAAACATTCCTTCTTCAAGCAAGCTCGGTCAAATGATTATATCTCACGAACACTTCTGGCGGGGCTGCCTGCTCTTGGTGATCGCATCAAGGAATTAAAGAAAATGCCAGATGGACAAATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010562 GO:0010604 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023052 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

241

Amino Acids

27.72

Weight (kDa)

9.58

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 76	1.4e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	4 - 77	2.4e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	122 - 200	7e-06	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	126 - 204	2.6e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640 AT1G79640
fragaria_vesca	FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050 FvH4_6g28050
malus_domestica	MD09G1229900.v1.1 MD17G1228700.v1.1
prunus_persica	Prupe.3G106100_v2.0.a1 Prupe.3G106100_v2.0.a1
pyrus_communis	pycom09g14840 pycom17g23120
rosa_chinensis	RchiOBHm_Chr2g0131781 RchiOBHm_Chr7g0213591
rosa_laevigata	RLG00000019211
rosa_multiflora	Rmu_sc0002589.1_g000040 Rmu_sc0009880.1_g000006
rosa_roxburghii	Rroxscaffold_2G00112600
rosa_rugosa	Rorug02G0299500 Rorug02G0299600 Rorug02G0299700 Rorug02G0299800
rosa_samantha	Rh1BG109800 Rh2AG352000 Rh2BG359100 Rh2CG337600 Rh2DG376500 Rh5CG277400
rosa_wichuraiana	Rw2G028610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	377, 656
AclWI	GGATC	2 cut(s)	557, 570
AcsI	RAATTY	1 cut(s)	327
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	1 cut(s)	671
AgsI	TTSAA	7 cut(s)	115, 178, 259, 522, 570, 598, 613
AhdI	GACNNNNNGTC	1 cut(s)	291
AluBI	AGCT	2 cut(s)	412, 620
AluI	AGCT	2 cut(s)	412, 620
AlwI	GGATC	2 cut(s)	557, 570
ApeKI	GCWGC	2 cut(s)	337, 661
ApoI	RAATTY	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	686
BamHI	GGATCC	1 cut(s)	562
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	349, 648
BccI	CCATC	2 cut(s)	24, 701
BciVI	GTATCC	1 cut(s)	453
BfaI	CTAG	4 cut(s)	21, 291, 489, 546
BfuI	GTATCC	1 cut(s)	453
BisI	GCNGC	2 cut(s)	338, 662
BlsI	GCNGC	2 cut(s)	339, 663
BmeRI	GACNNNNNGTC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	564
BmsI	GCATC	2 cut(s)	128, 690
BpiI	GAAGAC	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	418
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseXI	GCAGC	2 cut(s)	349, 648
BslI	CCNNNNNNNGG	1 cut(s)	671
Bsp143I	GATC	2 cut(s)	562, 676
Bsp19I	CCATGG	1 cut(s)	418
BspACI	CCGC	2 cut(s)	377, 656
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	2 cut(s)	557, 570
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	562, 676
BssT1I	CCWWGG	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	414, 618, 666
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	1 cut(s)	16
BstKTI	GATC	2 cut(s)	565, 679
BstMBI	GATC	2 cut(s)	562, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	349, 648
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BsuI	GTATCC	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	414, 618, 666
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	9 cut(s)	76, 85, 203, 245, 341, 369, 419, 425, 494
CviJI	RGCY	5 cut(s)	155, 412, 492, 620, 661
CviKI_1	RGCY	5 cut(s)	155, 412, 492, 620, 661
CviQI	GTAC	1 cut(s)	458
DpnI	GATC	2 cut(s)	564, 678
DpnII	GATC	2 cut(s)	562, 676
DraI	TTTAAA	2 cut(s)	186, 280
DriI	GACNNNNNGTC	1 cut(s)	291
Eam1105I	GACNNNNNGTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	9 cut(s)	79, 88, 206, 248, 344, 372, 422, 428, 497
FatI	CATG	9 cut(s)	75, 84, 202, 244, 340, 368, 418, 424, 493
FauI	CCCGC	1 cut(s)	649
Fnu4HI	GCNGC	2 cut(s)	338, 662
FokI	GGATG	1 cut(s)	3
Fsp4HI	GCNGC	2 cut(s)	338, 662
FspBI	CTAG	4 cut(s)	21, 291, 489, 546
GluI	GCNGC	2 cut(s)	338, 662
Hin1II	CATG	9 cut(s)	79, 88, 206, 248, 344, 372, 422, 428, 497
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	4, 95
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	2 cut(s)	218, 642
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	6 cut(s)	109, 172, 448, 576, 588, 616
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	337, 404, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	9 cut(s)	79, 88, 206, 248, 344, 372, 422, 428, 497
Kzo9I	GATC	2 cut(s)	562, 676
LmnI	GCTCC	2 cut(s)	235, 409
LpnPI	CCDG	3 cut(s)	638, 678, 717
Lsp1109I	GCAGC	2 cut(s)	349, 648
LweI	GCATC	2 cut(s)	128, 690
MaeI	CTAG	4 cut(s)	21, 291, 489, 546
MaeII	ACGT	1 cut(s)	166
MalI	GATC	2 cut(s)	564, 678
MboI	GATC	2 cut(s)	562, 676
MboII	GAAGA	4 cut(s)	95, 155, 185, 601
MflI	RGATCY	1 cut(s)	562
MluCI	AATT	4 cut(s)	61, 239, 327, 689
MnlI	CCTC	2 cut(s)	133, 456
MseI	TTAA	7 cut(s)	30, 185, 279, 315, 348, 531, 692
MslI	CAYNNNNRTG	7 cut(s)	21, 201, 219, 249, 367, 423, 498
MwoI	GCNNNNNNNGC	1 cut(s)	481
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	2 cut(s)	562, 676
NlaIII	CATG	9 cut(s)	79, 88, 206, 248, 344, 372, 422, 428, 497
NlaIV	GGNNCC	1 cut(s)	564
PfeI	GAWTC	2 cut(s)	4, 95
PkrI	GCNGC	2 cut(s)	339, 663
Ppu21I	YACGTR	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	7 cut(s)	21, 201, 219, 249, 367, 423, 498
SaqAI	TTAA	7 cut(s)	30, 185, 279, 315, 348, 531, 692
SatI	GCNGC	2 cut(s)	338, 662
Sau3AI	GATC	2 cut(s)	562, 676
SetI	ASST	7 cut(s)	169, 414, 459, 473, 490, 580, 622
SfaNI	GCATC	2 cut(s)	128, 690
SmiMI	CAYNNNNRTG	7 cut(s)	21, 201, 219, 249, 367, 423, 498
Sse9I	AATT	4 cut(s)	61, 239, 327, 689
SsiI	CCGC	2 cut(s)	377, 656
SspMI	CTAG	4 cut(s)	21, 291, 489, 546
StyI	CCWWGG	1 cut(s)	418
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	612
TasI	AATT	4 cut(s)	61, 239, 327, 689
TfiI	GAWTC	2 cut(s)	4, 95
Tru1I	TTAA	7 cut(s)	30, 185, 279, 315, 348, 531, 692
Tru9I	TTAA	7 cut(s)	30, 185, 279, 315, 348, 531, 692
TseI	GCWGC	2 cut(s)	337, 661
TspDTI	ATGAA	5 cut(s)	73, 185, 203, 467, 516
XapI	RAATTY	1 cut(s)	327
XspI	CTAG	4 cut(s)	21, 291, 489, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.