pycom09g15890

Protein of unknown function (DUF455)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0014019
Physical Location & Seq
Reverse (-)
15973655 .. 15976961
3307 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1143 bp
ATGCAGCGTCTTAAAGTAAAGGCCATGCTTTCTCCCACCTTCCAAGCCCCCTCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTGCTTGCAATACTCACCTTGGTCCGGCCTGCAAACCTGGAGAGTGTGCCCACTTAATGAGAACCGTTGGTGGGGTACCAAGGGCCCACAGCCTCAGCCGCTACAGTCACAGCCCTCCCCCATTGACAAGCATTACAATCAAATGGTGTCGTCAGCTTCCTCCCTCGCAGAGCTCGGCGCTCTGGTTCTCTCCACCAGCGACCCCCTCGCCAAGTCAAGGATTTCCCACCTCGCTTATTCCAGGTGGCGCCATCACCGCCTACCGCTCGGTGCATCTGATCCCCCTCCTCCGCCCGCTCGCCCCTTCAAACCCCAACTGGTTTCTCCTAAAGAAATTCCAGCTCCCAAGAACTCGGGTTTGCCTCTTAATGCTTATATGCTTCATAATCTTGCTCACGTTGAGCTCAACGCAATTGATTTGGCGTGGGATACTGTTGTTCGTTTTTCACCTTTTAGTGAGACTCTAGGGGAGGGTTTTTTTGCCGACTTTGCTCATGTCGCTGACGATGAGAGTCGCCATTTTGCTTGGTGTTCTCAGAGGCTTGCTGAACTTGGTTTCAATTACGGAGATATGCCTGCTCATAATCTGCTTTGGAGGGAATGTGAGAAATCATCTGACAATGTTGCTGCACGTTTGGCAGTGATCCCCTTAGTCCAGGAAGCTAGGGGACTAGATGCTGGACCTCGACTTGTACAAAAATTGGTTGGTTTTGGAGATCTTAGGACATCTAACATTGTTGCTAGAATCGCTGATGAAGAAGTTGCACATGTAGCTGTTGGTGTCCACTGGTTTGTCGATGTCTGTCAAAAAATGGGTTGTGCCCCATCTTCCGCGTTTAAAGACTTGTTGAAAGAGTATAATGTGGAGTTGAGAGGGCCTTTCAATTATTCAGCTCGTGATGAAGCTGGCATTCCTCGTGATTGGTACGACTTATGCGCAAATCACCCGCATAAGGATAAGAAAACGGATAAAAGTGAGAAGCTTTCTGAGGTCTATGAAAGGCTTGCTTCCATAATTTCCATGGAGAGCGAGAACTCAAGTTTGAACAAGCCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF455

Protein Analysis

381

Amino Acids

42.3

Weight (kDa)

6.68

Isoelectric Point (pI)

53.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF455 PF04305 93 - 338 3.1e-85 Protein of unknown function (DUF455)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014019)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06240
fragaria_vesca FvH4_6g27080 FvH4_6g27080
malus_domestica MD09G1240300.v1.1
prunus_persica Prupe.3G124300_v2.0.a1
pyrus_communis pycom09g15890
rosa_chinensis RchiOBHm_Chr2g0129041
rosa_laevigata RLG00000019046
rosa_multiflora Rmu_co8451771.1_g000001
rosa_roxburghii Rroxscaffold_2G00114940
rosa_rugosa Rorug02G0283600 Rorug02G0283700
rosa_samantha Rh2AG336100 Rh2BG344100 Rh2CG323000 Rh2DG360700
rosa_wichuraiana Rw2G027250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1021
Acc65I GGTACC 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 158, 330
AccBSI CCGCTC 2 cut(s) 349, 380
AccII CGCG 1 cut(s) 917
AciI CCGC 7 cut(s) 182, 340, 347, 374, 378, 915, 1031
AclWI GGATC 2 cut(s) 356, 721
AcsI RAATTY 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 331
AfaI GTAC 3 cut(s) 160, 777, 1010
AfiI CCNNNNNNNGG 4 cut(s) 107, 154, 300, 1036
AflIII ACRYGT 1 cut(s) 850
AgsI TTSAA 5 cut(s) 391, 643, 934, 967, 1129
AjnI CCWGG 3 cut(s) 119, 323, 738
AluBI AGCT 9 cut(s) 239, 256, 425, 487, 746, 857, 977, 989, 1066
AluI AGCT 9 cut(s) 239, 256, 425, 487, 746, 857, 977, 989, 1066
Alw21I GWGCWC 2 cut(s) 258, 489
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 2 cut(s) 356, 721
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 4 cut(s) 21, 109, 166, 959
ApaI GGGCCC 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 4, 710
ApoI RAATTY 1 cut(s) 417
Asp718I GGTACC 1 cut(s) 158
AspLEI GCGC 3 cut(s) 263, 333, 1022
AspS9I GGNCC 5 cut(s) 105, 166, 167, 764, 959
AsuHPI GGTGA 4 cut(s) 90, 329, 522, 1019
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 2 cut(s) 105, 764
BaeGI GKGCMC 3 cut(s) 134, 170, 907
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanI GGYRCC 2 cut(s) 158, 330
BanII GRGCYC 3 cut(s) 170, 258, 489
BauI CACGAG 2 cut(s) 978, 999
Bbv12I GWGCWC 2 cut(s) 258, 489
BbvCI CCTCAGC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 16, 697
BccI CCATC 2 cut(s) 342, 916
BciT130I CCWGG 3 cut(s) 121, 325, 740
BciVI GTATCC 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 4 cut(s) 548, 747, 755, 825
BfmI CTRYAG 1 cut(s) 185
BfoI RGCGCY 2 cut(s) 264, 334
BfuI GTATCC 1 cut(s) 505
BglII AGATCT 1 cut(s) 799
BisI GCNGC 3 cut(s) 5, 182, 711
BlsI GCNGC 3 cut(s) 6, 183, 712
Bme1390I CCNGG 3 cut(s) 121, 325, 740
Bme18I GGWCC 2 cut(s) 105, 764
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 5 cut(s) 105, 166, 167, 764, 959
BmiI GGNNCC 3 cut(s) 160, 168, 332
BmrFI CCNGG 3 cut(s) 121, 325, 740
BmsI GCATC 2 cut(s) 365, 748
BpmI CTGGAG 1 cut(s) 142
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 1105
BsaHI GRCGYC 1 cut(s) 331
BsaJI CCNNGG 3 cut(s) 101, 162, 1104
BsaXI ACNNNNNCTCC 2 cut(s) 670, 700
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 154, 300, 1036
Bse1I ACTGG 2 cut(s) 405, 875
BseBI CCWGG 3 cut(s) 121, 325, 740
BseDI CCNNGG 3 cut(s) 101, 162, 1104
BseLI CCNNNNNNNGG 4 cut(s) 107, 154, 300, 1036
BseMII CTCAG 4 cut(s) 191, 632, 1062, 1128
BseNI ACTGG 2 cut(s) 405, 875
BseRI GAGGAG 1 cut(s) 360
BseSI GKGCMC 3 cut(s) 134, 170, 907
BseXI GCAGC 2 cut(s) 16, 697
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 1 cut(s) 917
BshFI GGCC 4 cut(s) 23, 111, 168, 961
BshNI GGYRCC 2 cut(s) 158, 330
BsiHKAI GWGCWC 2 cut(s) 258, 489
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 4 cut(s) 107, 154, 300, 1036
BsmAI GTCTC 1 cut(s) 536
BsmFI GGGAC 1 cut(s) 765
BsmI GAATGC 1 cut(s) 993
BsnI GGCC 4 cut(s) 23, 111, 168, 961
BsoBI CYCGRG 1 cut(s) 436
Bsp120I GGGCCC 1 cut(s) 166
Bsp1286I GDGCHC 5 cut(s) 134, 170, 258, 489, 907
Bsp1407I TGTACA 1 cut(s) 775
Bsp143I GATC 3 cut(s) 361, 726, 799
Bsp19I CCATGG 1 cut(s) 1104
BspACI CCGC 7 cut(s) 182, 340, 347, 374, 378, 915, 1031
BspANI GGCC 4 cut(s) 23, 111, 168, 961
BspCNI CTCAG 4 cut(s) 190, 631, 1063, 1129
BspFNI CGCG 1 cut(s) 917
BspLI GGNNCC 3 cut(s) 160, 168, 332
BspPI GGATC 2 cut(s) 356, 721
BspT107I GGYRCC 2 cut(s) 158, 330
BsrBI CCGCTC 2 cut(s) 349, 380
BsrGI TGTACA 1 cut(s) 775
BsrI ACTGG 2 cut(s) 405, 875
BssECI CCNNGG 3 cut(s) 101, 162, 1104
BssMI GATC 3 cut(s) 361, 726, 799
BssNI GRCGYC 1 cut(s) 331
BssSI CACGAG 2 cut(s) 978, 999
BssT1I CCWWGG 3 cut(s) 101, 162, 1104
Bst2BI CACGAG 2 cut(s) 978, 999
Bst2UI CCWGG 3 cut(s) 121, 325, 740
Bst4CI ACNGT 3 cut(s) 149, 189, 517
BstACI GRCGYC 1 cut(s) 331
BstAUI TGTACA 1 cut(s) 775
BstC8I GCNNGC 8 cut(s) 89, 113, 378, 382, 627, 660, 991, 1089
BstDEI CTNAG 6 cut(s) 177, 618, 733, 803, 1071, 1137
BstDSI CCRYGG 1 cut(s) 1104
BstFNI CGCG 1 cut(s) 917
BstH2I RGCGCY 2 cut(s) 264, 334
BstHHI GCGC 3 cut(s) 263, 333, 1022
BstKTI GATC 3 cut(s) 364, 729, 802
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 3 cut(s) 361, 726, 799
BstMWI GCNNNNNNNGC 7 cut(s) 181, 339, 572, 581, 719, 830, 854
BstNI CCWGG 3 cut(s) 121, 325, 740
BstNSI RCATGY 1 cut(s) 854
BstSCI CCNGG 3 cut(s) 119, 323, 738
BstSFI CTRYAG 1 cut(s) 185
BstSLI GKGCMC 3 cut(s) 134, 170, 907
BstUI CGCG 1 cut(s) 917
BstV1I GCAGC 2 cut(s) 16, 697
BstX2I RGATCY 1 cut(s) 799
BstYI RGATCY 1 cut(s) 799
BsuI GTATCC 1 cut(s) 505
BsuRI GGCC 4 cut(s) 23, 111, 168, 961
BtgI CCRYGG 1 cut(s) 1104
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 729, 868
Cac8I GCNNGC 8 cut(s) 89, 113, 378, 382, 627, 660, 991, 1089
CfoI GCGC 3 cut(s) 263, 333, 1022
Cfr13I GGNCC 5 cut(s) 105, 166, 167, 764, 959
Csp6I GTAC 3 cut(s) 159, 776, 1009
CviAII CATG 4 cut(s) 25, 578, 851, 1105
CviQI GTAC 3 cut(s) 159, 776, 1009
DdeI CTNAG 6 cut(s) 177, 618, 733, 803, 1071, 1137
DinI GGCGCC 1 cut(s) 332
DpnI GATC 3 cut(s) 363, 728, 801
DpnII GATC 3 cut(s) 361, 726, 799
DraI TTTAAA 1 cut(s) 922
EciI GGCGGA 1 cut(s) 363
Ecl136II GAGCTC 2 cut(s) 256, 487
Eco130I CCWWGG 3 cut(s) 101, 162, 1104
Eco24I GRGCYC 3 cut(s) 170, 258, 489
Eco47I GGWCC 2 cut(s) 105, 764
Eco53kI GAGCTC 2 cut(s) 256, 487
Eco88I CYCGRG 1 cut(s) 436
EcoICRI GAGCTC 2 cut(s) 256, 487
EcoO109I RGGNCCY 2 cut(s) 166, 959
EcoRII CCWGG 3 cut(s) 119, 323, 738
EcoT14I CCWWGG 3 cut(s) 101, 162, 1104
EcoT38I GRGCYC 3 cut(s) 170, 258, 489
EgeI GGCGCC 1 cut(s) 332
EheI GGCGCC 1 cut(s) 332
ErhI CCWWGG 3 cut(s) 101, 162, 1104
FaeI CATG 4 cut(s) 28, 581, 854, 1108
FalI AAGNNNNNCTT 2 cut(s) 1075, 1107
FaqI GGGAC 1 cut(s) 765
FatI CATG 4 cut(s) 24, 577, 850, 1104
FauI CCCGC 2 cut(s) 385, 1038
Fnu4HI GCNGC 3 cut(s) 5, 182, 711
FriOI GRGCYC 3 cut(s) 170, 258, 489
Fsp4HI GCNGC 3 cut(s) 5, 182, 711
FspBI CTAG 4 cut(s) 548, 747, 755, 825
FspI TGCGCA 1 cut(s) 1021
GlaI GCGC 3 cut(s) 262, 332, 1021
GluI GCNGC 3 cut(s) 5, 182, 711
GsuI CTGGAG 1 cut(s) 142
HaeII RGCGCY 2 cut(s) 264, 334
HaeIII GGCC 4 cut(s) 23, 111, 168, 961
HapII CCGG 1 cut(s) 108
HhaI GCGC 3 cut(s) 263, 333, 1022
Hin1I GRCGYC 1 cut(s) 331
Hin1II CATG 4 cut(s) 28, 581, 854, 1108
Hin6I GCGC 3 cut(s) 261, 331, 1020
HinP1I GCGC 3 cut(s) 261, 331, 1020
HindIII AAGCTT 1 cut(s) 1064
HinfI GANTC 3 cut(s) 544, 595, 828
HpaII CCGG 1 cut(s) 108
HphI GGTGA 4 cut(s) 90, 329, 522, 1019
Hpy166II GTNNAC 1 cut(s) 868
Hpy188I TCNGA 4 cut(s) 361, 621, 700, 1072
Hpy188III TCNNGA 2 cut(s) 980, 1001
Hpy8I GTNNAC 1 cut(s) 868
HpyAV CCTTC 2 cut(s) 49, 397
HpyCH4III ACNGT 3 cut(s) 149, 189, 517
HpyCH4IV ACGT 2 cut(s) 480, 715
HpyCH4V TGCA 6 cut(s) 4, 91, 115, 356, 713, 848
HpyF10VI GCNNNNNNNGC 7 cut(s) 181, 339, 572, 581, 719, 830, 854
HpyF3I CTNAG 6 cut(s) 177, 618, 733, 803, 1071, 1137
HpySE526I ACGT 2 cut(s) 480, 715
Hsp92I GRCGYC 1 cut(s) 331
Hsp92II CATG 4 cut(s) 28, 581, 854, 1108
HspAI GCGC 3 cut(s) 261, 331, 1020
KasI GGCGCC 1 cut(s) 330
KpnI GGTACC 1 cut(s) 162
Kzo9I GATC 3 cut(s) 361, 726, 799
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 2 cut(s) 16, 697
LweI GCATC 2 cut(s) 365, 748
MaeI CTAG 4 cut(s) 548, 747, 755, 825
MaeII ACGT 2 cut(s) 480, 715
MaeIII GTNAC 1 cut(s) 189
MalI GATC 3 cut(s) 363, 728, 801
MbiI CCGCTC 2 cut(s) 349, 380
MboI GATC 3 cut(s) 361, 726, 799
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 799
MhlI GDGCHC 5 cut(s) 134, 170, 258, 489, 907
MluCI AATT 6 cut(s) 417, 495, 643, 782, 967, 1098
Mly113I GGCGCC 1 cut(s) 331
MlyI GAGTC 2 cut(s) 538, 604
MseI TTAA 4 cut(s) 12, 138, 450, 921
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 3 cut(s) 121, 325, 740
MunI CAATTG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 993
MvaI CCWGG 3 cut(s) 121, 325, 740
MvnI CGCG 1 cut(s) 917
MwoI GCNNNNNNNGC 7 cut(s) 181, 339, 572, 581, 719, 830, 854
NarI GGCGCC 1 cut(s) 331
NcoI CCATGG 1 cut(s) 1104
NdeII GATC 3 cut(s) 361, 726, 799
NlaIII CATG 4 cut(s) 28, 581, 854, 1108
NlaIV GGNNCC 3 cut(s) 160, 168, 332
NmeAIII GCCGAG 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 189
NsbI TGCGCA 1 cut(s) 1021
NspI RCATGY 1 cut(s) 854
PciI ACATGT 1 cut(s) 850
PctI GAATGC 1 cut(s) 993
PfeI GAWTC 1 cut(s) 828
PfoI TCCNGGA 1 cut(s) 738
PkrI GCNGC 3 cut(s) 6, 183, 712
PleI GAGTC 2 cut(s) 538, 603
PluTI GGCGCC 1 cut(s) 334
PpsI GAGTC 2 cut(s) 538, 603
PscI ACATGT 1 cut(s) 850
Psp124BI GAGCTC 2 cut(s) 258, 489
Psp6I CCWGG 3 cut(s) 119, 323, 738
PspGI CCWGG 3 cut(s) 119, 323, 738
PspN4I GGNNCC 3 cut(s) 160, 168, 332
PspOMI GGGCCC 1 cut(s) 166
PspPI GGNCC 5 cut(s) 105, 166, 167, 764, 959
PsuI RGATCY 1 cut(s) 799
RsaI GTAC 3 cut(s) 160, 777, 1010
RsaNI GTAC 3 cut(s) 159, 776, 1009
SacI GAGCTC 2 cut(s) 258, 489
SaqAI TTAA 4 cut(s) 12, 138, 450, 921
SatI GCNGC 3 cut(s) 5, 182, 711
Sau3AI GATC 3 cut(s) 361, 726, 799
Sau96I GGNCC 5 cut(s) 105, 166, 167, 764, 959
SchI GAGTC 2 cut(s) 538, 604
ScrFI CCNGG 3 cut(s) 121, 325, 740
SduI GDGCHC 5 cut(s) 134, 170, 258, 489, 907
SfaNI GCATC 2 cut(s) 365, 748
SfcI CTRYAG 1 cut(s) 185
SfoI GGCGCC 1 cut(s) 332
SinI GGWCC 2 cut(s) 105, 764
SmlI CTYRAG 1 cut(s) 1120
SmoI CTYRAG 1 cut(s) 1120
Sse9I AATT 6 cut(s) 417, 495, 643, 782, 967, 1098
SsiI CCGC 7 cut(s) 182, 340, 347, 374, 378, 915, 1031
SspDI GGCGCC 1 cut(s) 330
SspMI CTAG 4 cut(s) 548, 747, 755, 825
SstI GAGCTC 2 cut(s) 258, 489
StyD4I CCNGG 3 cut(s) 119, 323, 738
StyI CCWWGG 3 cut(s) 101, 162, 1104
TaaI ACNGT 3 cut(s) 149, 189, 517
TaiI ACGT 2 cut(s) 483, 718
TaqI TCGA 2 cut(s) 769, 879
TasI AATT 6 cut(s) 417, 495, 643, 782, 967, 1098
TatI WGTACW 1 cut(s) 775
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 1 cut(s) 828
Tru1I TTAA 4 cut(s) 12, 138, 450, 921
Tru9I TTAA 4 cut(s) 12, 138, 450, 921
TscAI CASTG 2 cut(s) 729, 875
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 2 cut(s) 4, 710
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 4 cut(s) 455, 852, 999, 1095
TspGWI ACGGA 2 cut(s) 663, 1064
TspRI CASTG 2 cut(s) 729, 875
VpaK11BI GGWCC 2 cut(s) 105, 764
XapI RAATTY 1 cut(s) 417
XceI RCATGY 1 cut(s) 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 1102
XspI CTAG 4 cut(s) 548, 747, 755, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.