pycom09g19170

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0006197
Physical Location & Seq
Forward (+)
19939302 .. 19940510
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1131 bp
ATGCTTACACATCTTAAATTTCGCCACATTCTCTGTACAGTTCAATCCAGCAGGCCAGAAACCCTAATCTCTTTTACCCAATTGGTTAGATATTGTCATTTTCAATTGAAAACGGGTTTCAATTCTTCGAATCCTTCCTCATGTTTGGCACCAAAGAAAATTTCTGAAAACAGTGTTGCAATTTTCTGGGATTTGGATACCAGACCACCCAAATCAGTCTCACCGTACAAAGCCGCCGTCAAGCTCAAGACTGCGGCTTCATCTTTCGGGATTGTCCGGCATATGATAGCGTATGCGAATCGAAATGCGTTGAATTATGTTCCACAAGTTGTTTGGGAAAGGAAAGAGAGGAATAGGGTTGTGATTAGGGATGGTGAGTCGAATACATGTCCGGTTTGTGGGAGAAGATTTTATACCAATGAGAAGCTTATGAATCATTTTAAGCAGATTCATGAGACGGAACATGTGAAGAGGTTGAATCAGATTGAGTCTGCTAGAGGGAGTAGGAGAGTGAAGTTGGTGGGTAAGTATTCCATGAAGATGGAGAAGTATAAGAATGCTGCAAGGGATGTTTTGACAACCAAGGTGGGGCGTGGTTTATCGGATGAGGTGGAGCAGGCAGGGTTTTGGATTCGGAGTGTGTTGGATAAGCCACAGGGGGTGAAAGTCGCATTGAGACATCACATTGTGGACATGATGGATCACAGGAGATTTGACTGTTTGATGCTTGTGTCGGATGATTCGGATTTTGTGGATGTTGTGATGGAGGCAAAGTTGAGATGTCTGAAGACGGTTGTTGTGGGGGATTTTGGCGATGGGGCTCTGAAGAGGGCTGCGGATTCTGGTTTTTCTTGGAATGAAATTTTGATTGGGAAGGCTAAAAAGGAGGCAGTGTCAGTTGTGGGGAAATGGAAAGACCGTGATGTGTTGAAGAGATTGGAGTGGACATACAAGTCAGATGAGGATCAAAGTTTGCATAAATGGAATGATGAGGTTTATGGTGAAAGTGAGGATGACGATATCGAACGTTTTGTTGGTGAGGCGAATGACAATTTGGGGAAGGATGATACTTGCAGTTGGTGGGAGCTTGACTCTGATTCCGAGGCCATTTCATCACAATCATCCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN

Protein Analysis

377

Amino Acids

43.09

Weight (kDa)

8.85

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 200 - 281 1.8e-06 NYN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 952
AccB1I GGYRCC 1 cut(s) 148
AciI CCGC 3 cut(s) 234, 254, 836
AclI AACGTT 1 cut(s) 1027
AclWI GGATC 2 cut(s) 708, 972
AcsI RAATTY 3 cut(s) 17, 159, 861
AcuI CTGAAG 2 cut(s) 806, 845
AdeI CACNNNGTG 1 cut(s) 688
AfaI GTAC 2 cut(s) 37, 227
AfiI CCNNNNNNNGG 2 cut(s) 398, 588
AflIII ACRYGT 2 cut(s) 386, 463
AgsI TTSAA 7 cut(s) 44, 104, 109, 121, 313, 478, 931
AjuI GAANNNNNNNTTGG 8 cut(s) 145, 177, 852, 884, 1017, 1037, 1049, 1069
AluBI AGCT 3 cut(s) 244, 427, 1087
AluI AGCT 3 cut(s) 244, 427, 1087
Alw26I GTCTC 3 cut(s) 223, 449, 670
AlwI GGATC 2 cut(s) 708, 972
AoxI GGCC 2 cut(s) 53, 1104
ApeKI GCWGC 2 cut(s) 560, 833
ApoI RAATTY 3 cut(s) 17, 159, 861
ArsI GACNNNNNNTTYG 2 cut(s) 222, 254
AsuHPI GGTGA 5 cut(s) 213, 386, 673, 1013, 1049
AsuII TTCGAA 1 cut(s) 128
BanI GGYRCC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 823
BarI GAAGNNNNNNTAC 2 cut(s) 397, 429
BbsI GAAGAC 1 cut(s) 794
BbvI GCAGC 2 cut(s) 547, 820
BccI CCATC 5 cut(s) 365, 535, 691, 757, 809
BceAI ACGGC 1 cut(s) 221
BciVI GTATCC 1 cut(s) 190
BcoDI GTCTC 3 cut(s) 223, 449, 670
BfaI CTAG 1 cut(s) 495
BfuI GTATCC 1 cut(s) 190
BisI GCNGC 4 cut(s) 234, 255, 561, 834
BlsI GCNGC 4 cut(s) 235, 256, 562, 835
BmiI GGNNCC 1 cut(s) 150
BmsI GCATC 1 cut(s) 714
BpiI GAAGAC 1 cut(s) 794
BplI GAGNNNNNCTC 2 cut(s) 1076, 1108
Bpu14I TTCGAA 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 963
BsaJI CCNNGG 2 cut(s) 582, 1101
BsaWI WCCGGW 1 cut(s) 391
BsaXI ACNNNNNCTCC 4 cut(s) 758, 788, 878, 908
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 588
Bse8I GATNNNNATC 1 cut(s) 963
BseDI CCNNGG 2 cut(s) 582, 1101
BseGI GGATG 8 cut(s) 376, 574, 610, 742, 760, 1018, 1069, 1121
BseJI GATNNNNATC 1 cut(s) 963
BseLI CCNNNNNNNGG 2 cut(s) 398, 588
BseXI GCAGC 2 cut(s) 547, 820
BshFI GGCC 2 cut(s) 55, 1106
BshNI GGYRCC 1 cut(s) 148
BsiSI CCGG 2 cut(s) 277, 392
BslI CCNNNNNNNGG 2 cut(s) 398, 588
BsmAI GTCTC 3 cut(s) 223, 449, 670
BsmBI CGTCTC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 562
BsnI GGCC 2 cut(s) 55, 1106
Bsp119I TTCGAA 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 823
Bsp1407I TGTACA 1 cut(s) 35
Bsp143I GATC 2 cut(s) 700, 964
BspACI CCGC 3 cut(s) 234, 254, 836
BspANI GGCC 2 cut(s) 55, 1106
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 2 cut(s) 708, 972
BspT104I TTCGAA 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 148
BsrGI TGTACA 1 cut(s) 35
BssECI CCNNGG 2 cut(s) 582, 1101
BssMI GATC 2 cut(s) 700, 964
BssT1I CCWWGG 1 cut(s) 582
Bst4CI ACNGT 6 cut(s) 40, 173, 225, 719, 793, 920
Bst6I CTCTTC 3 cut(s) 464, 821, 926
BstAUI TGTACA 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 53, 618
BstF5I GGATG 8 cut(s) 376, 574, 610, 742, 760, 1018, 1069, 1121
BstKTI GATC 2 cut(s) 703, 967
BstMAI GTCTC 3 cut(s) 223, 449, 670
BstMBI GATC 2 cut(s) 700, 964
BstNSI RCATGY 2 cut(s) 390, 467
BstV1I GCAGC 2 cut(s) 547, 820
BstV2I GAAGAC 1 cut(s) 794
BstXI CCANNNNNNTGG 1 cut(s) 541
BsuI GTATCC 1 cut(s) 190
BsuRI GGCC 2 cut(s) 55, 1106
BtgZI GCGATG 1 cut(s) 828
BtsCI GGATG 8 cut(s) 376, 574, 610, 742, 760, 1018, 1069, 1121
BtsI GCAGTG 1 cut(s) 897
BtsIMutI CAGTG 2 cut(s) 178, 897
Cac8I GCNNGC 2 cut(s) 53, 618
CciI TCATGA 1 cut(s) 451
Csp6I GTAC 2 cut(s) 36, 226
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 6 cut(s) 141, 387, 452, 464, 535, 694
CviQI GTAC 2 cut(s) 36, 226
DpnI GATC 2 cut(s) 702, 966
DpnII GATC 2 cut(s) 700, 964
DraIII CACNNNGTG 1 cut(s) 688
DrdI GACNNNNNNGTC 1 cut(s) 952
DseDI GACNNNNNNGTC 1 cut(s) 952
Eam1104I CTCTTC 3 cut(s) 464, 821, 926
EarI CTCTTC 3 cut(s) 464, 821, 926
Eco130I CCWWGG 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 823
Eco32I GATATC 1 cut(s) 1021
Eco57I CTGAAG 2 cut(s) 806, 845
EcoRV GATATC 1 cut(s) 1021
EcoT14I CCWWGG 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 582
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 6 cut(s) 144, 390, 455, 467, 538, 697
FatI CATG 6 cut(s) 140, 386, 451, 463, 534, 693
FauNDI CATATG 1 cut(s) 282
Fnu4HI GCNGC 4 cut(s) 234, 255, 561, 834
FokI GGATG 8 cut(s) 383, 581, 617, 749, 767, 1025, 1076, 1108
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 4 cut(s) 234, 255, 561, 834
FspBI CTAG 1 cut(s) 495
GluI GCNGC 4 cut(s) 234, 255, 561, 834
HaeIII GGCC 2 cut(s) 55, 1106
HapII CCGG 2 cut(s) 277, 392
Hin1II CATG 6 cut(s) 144, 390, 455, 467, 538, 697
HindIII AAGCTT 1 cut(s) 425
HpaII CCGG 2 cut(s) 277, 392
HphI GGTGA 5 cut(s) 213, 386, 673, 1013, 1049
Hpy166II GTNNAC 2 cut(s) 691, 945
Hpy188III TCNNGA 4 cut(s) 247, 268, 452, 1125
Hpy8I GTNNAC 2 cut(s) 691, 945
HpyAV CCTTC 3 cut(s) 144, 868, 1054
HpyCH4III ACNGT 6 cut(s) 40, 173, 225, 719, 793, 920
HpyCH4IV ACGT 1 cut(s) 1027
HpyCH4V TGCA 4 cut(s) 179, 563, 976, 1074
HpySE526I ACGT 1 cut(s) 1027
Hsp92II CATG 6 cut(s) 144, 390, 455, 467, 538, 697
Kzo9I GATC 2 cut(s) 700, 964
LmnI GCTCC 2 cut(s) 613, 1084
Lsp1109I GCAGC 2 cut(s) 547, 820
LweI GCATC 1 cut(s) 714
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 1027
MalI GATC 2 cut(s) 702, 966
MboI GATC 2 cut(s) 700, 964
MboII GAAGA 7 cut(s) 117, 417, 481, 550, 799, 838, 943
MfeI CAATTG 2 cut(s) 80, 104
MhlI GDGCHC 1 cut(s) 823
MluCI AATT 9 cut(s) 17, 80, 104, 121, 159, 180, 313, 861, 1051
MlyI GAGTC 3 cut(s) 386, 497, 1085
MmeI TCCRAC 2 cut(s) 624, 714
MseI TTAA 2 cut(s) 15, 441
MslI CAYNNNNRTG 2 cut(s) 539, 1126
MspI CCGG 2 cut(s) 277, 392
MunI CAATTG 2 cut(s) 80, 104
Mva1269I GAATGC 1 cut(s) 562
NdeI CATATG 1 cut(s) 282
NdeII GATC 2 cut(s) 700, 964
NlaIII CATG 6 cut(s) 144, 390, 455, 467, 538, 697
NlaIV GGNNCC 1 cut(s) 150
NspI RCATGY 2 cut(s) 390, 467
NspV TTCGAA 1 cut(s) 128
PagI TCATGA 1 cut(s) 451
PciI ACATGT 2 cut(s) 386, 463
PctI GAATGC 1 cut(s) 562
PfeI GAWTC 9 cut(s) 130, 298, 433, 448, 478, 631, 740, 839, 1097
PkrI GCNGC 4 cut(s) 235, 256, 562, 835
PleI GAGTC 3 cut(s) 385, 496, 1085
PpsI GAGTC 3 cut(s) 385, 496, 1085
PscI ACATGT 2 cut(s) 386, 463
Psp1406I AACGTT 1 cut(s) 1027
PspN4I GGNNCC 1 cut(s) 150
RsaI GTAC 2 cut(s) 37, 227
RsaNI GTAC 2 cut(s) 36, 226
RseI CAYNNNNRTG 2 cut(s) 539, 1126
SaqAI TTAA 2 cut(s) 15, 441
SatI GCNGC 4 cut(s) 234, 255, 561, 834
Sau3AI GATC 2 cut(s) 700, 964
SchI GAGTC 3 cut(s) 386, 497, 1085
SduI GDGCHC 1 cut(s) 823
SetI ASST 8 cut(s) 246, 429, 476, 588, 612, 996, 1030, 1089
SfaNI GCATC 1 cut(s) 714
SfuI TTCGAA 1 cut(s) 128
SmiMI CAYNNNNRTG 2 cut(s) 539, 1126
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 9 cut(s) 17, 80, 104, 121, 159, 180, 313, 861, 1051
SsiI CCGC 3 cut(s) 234, 254, 836
SspMI CTAG 1 cut(s) 495
StyI CCWWGG 1 cut(s) 582
TaaI ACNGT 6 cut(s) 40, 173, 225, 719, 793, 920
TaiI ACGT 1 cut(s) 1030
TaqI TCGA 4 cut(s) 128, 301, 380, 1023
TasI AATT 9 cut(s) 17, 80, 104, 121, 159, 180, 313, 861, 1051
TatI WGTACW 1 cut(s) 35
TauI GCSGC 2 cut(s) 236, 257
TfiI GAWTC 9 cut(s) 130, 298, 433, 448, 478, 631, 740, 839, 1097
Tru1I TTAA 2 cut(s) 15, 441
Tru9I TTAA 2 cut(s) 15, 441
TscAI CASTG 2 cut(s) 178, 897
TseI GCWGC 2 cut(s) 560, 833
TspDTI ATGAA 6 cut(s) 249, 440, 446, 551, 873, 1101
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 2 cut(s) 178, 897
XapI RAATTY 3 cut(s) 17, 159, 861
XceI RCATGY 2 cut(s) 390, 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 330
XspI CTAG 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.