Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003872

Physical Location & Seq

Genomic Coordinates Reverse (-)

524842 .. 529706

Gene Structure 4865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTTGATTGGTCCAGACTGGGCAATAAATATTGAATTATGTGATATTATCAATATGGACCCTGGGCAAGCAAAAGAGGCCTTGAAGATACTCAAGAAGCGCCTGGGCAGCAAAAATCCAAAAATACAACTCTTGGCTCTTTTTGCATTGGAGACTGTGAGCAAGAACTGTGGTGAGAATGTTTTTCAGCAGATCGTTGAGCGTGATATCTTGCATGAAATGGTCAAAATAGTAAAGAAGAAGCCAGACTTGAATGTTAGGGAAAAGATACTAATTTTGATAGATACATGGCAAGAAGCTTTTGGGGGACCAAGGGGAAGATTTCCCCAGTATTATGCAGCATATAATGAATTGAGGTCTGCTGGAGTTGAATTTCCACCAAGAGAAGAGAACAGTGTACCAATATTTACTCCACCCCAGACCCAGCCAGTAGTTTCTCCTGTTACATCATATGATGATGCTGCCATTCAGGCTTCTCTCCAGTCGGATGCATCGGGCCTTAGCTTGCCAGAGATTCAGAATGCTCGTGGAATTGCAGCTGTGTTGATGGAAATGCTTAATGCCTTGGATCCTAAGAATCCTGAGGGTTTGAAGGAAGAAGTGATTGTTGACCTTGTTGATCAGTGCCGTTCATACCAAAAGCGTGTCAGGCTTCTTGTGAATGAGACTGCAGATGAGGAGCTTCTATGTCAGGGATTGGCACTGAACGATCGATCTGCAGCGTGTAATTTCTCGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030276 GO:0033043 GO:0044424 GO:0044464 GO:0045786 GO:0045839 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

247

Amino Acids

27.36

Weight (kDa)

4.98

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	4 - 103	4.6e-26	VHS domain
GAT	PF03127	179 - 237	1.1e-13	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21380 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970 AT1G76970
fragaria_vesca	FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400 FvH4_2g15400
malus_domestica	MD05G1008800.v1.1 MD10G1007100.v1.1 MD10G1007700.v1.1
prunus_persica	Prupe.8G010900_v2.0.a1 Prupe.8G010900_v2.0.a1
pyrus_communis	pycom05g00450 pycom10g00480
rosa_chinensis	RchiOBHm_Chr6g0278141
rosa_laevigata	RLG00000013238
rosa_multiflora	Rmu_co8265659.1_g000001 Rmu_sc0000791.1_g000057 Rmu_sc0000857.1_g000058
rosa_roxburghii	Rroxscaffold_7G00190500
rosa_rugosa	Rorug06G0114900
rosa_samantha	Rh6AG224900 Rh6BG229000 Rh6CG231500 Rh6DG222300
rosa_wichuraiana	Rw6G019660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	563, 576
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	1 cut(s)	399
AgsI	TTSAA	5 cut(s)	35, 85, 253, 371, 592
AjnI	CCWGG	2 cut(s)	61, 102
AluBI	AGCT	4 cut(s)	299, 504, 539, 682
AluI	AGCT	4 cut(s)	299, 504, 539, 682
Alw26I	GTCTC	2 cut(s)	146, 659
AlwI	GGATC	2 cut(s)	563, 576
AoxI	GGCC	2 cut(s)	78, 496
ApeKI	GCWGC	5 cut(s)	108, 338, 461, 536, 719
ApoI	RAATTY	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	4 cut(s)	11, 58, 308, 496
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	3 cut(s)	11, 58, 308
AxyI	CCTNAGG	1 cut(s)	582
BamHI	GGATCC	1 cut(s)	568
BauI	CACGAG	1 cut(s)	525
BbvI	GCAGC	5 cut(s)	120, 350, 448, 548, 731
BccI	CCATC	1 cut(s)	541
BceAI	ACGGC	1 cut(s)	612
BcgI	CGANNNNNNTGC	2 cut(s)	698, 732
BciT130I	CCWGG	2 cut(s)	63, 104
BclI	TGATCA	1 cut(s)	619
BcoDI	GTCTC	2 cut(s)	146, 659
BfmI	CTRYAG	2 cut(s)	669, 717
BfoI	RGCGCY	1 cut(s)	103
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	5 cut(s)	109, 339, 462, 537, 720
BlsI	GCNGC	5 cut(s)	110, 340, 463, 538, 721
Bme1390I	CCNGG	2 cut(s)	63, 104
Bme18I	GGWCC	3 cut(s)	11, 58, 308
BmgT120I	GGNCC	4 cut(s)	11, 58, 308, 496
BmiI	GGNNCC	3 cut(s)	60, 309, 570
BmrFI	CCNGG	2 cut(s)	63, 104
BmrI	ACTGGG	2 cut(s)	28, 322
BmsI	GCATC	3 cut(s)	448, 478, 500
BmuI	ACTGGG	2 cut(s)	28, 322
BpmI	CTGGAG	2 cut(s)	384, 464
Bpu10I	CCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	712
BsaJI	CCNNGG	5 cut(s)	61, 62, 103, 311, 564
Bse1I	ACTGG	4 cut(s)	23, 328, 428, 481
Bse21I	CCTNAGG	1 cut(s)	582
BseBI	CCWGG	2 cut(s)	63, 104
BseCI	ATCGAT	1 cut(s)	712
BseDI	CCNNGG	5 cut(s)	61, 62, 103, 311, 564
BseGI	GGATG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	4 cut(s)	23, 328, 428, 481
BseRI	GAGGAG	1 cut(s)	692
BseXI	GCAGC	5 cut(s)	120, 350, 448, 548, 731
BseYI	CCCAGC	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	712
BshFI	GGCC	2 cut(s)	80, 498
BshVI	ATCGAT	1 cut(s)	712
BsiEI	CGRYCG	1 cut(s)	712
BslFI	GGGAC	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	146, 659
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	2 cut(s)	80, 498
Bsp143I	GATC	5 cut(s)	192, 568, 619, 709, 713
BspANI	GGCC	2 cut(s)	80, 498
BspCNI	CTCAG	1 cut(s)	574
BspDI	ATCGAT	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	60, 309, 570
BspMAI	CTGCAG	2 cut(s)	673, 721
BspPI	GGATC	2 cut(s)	563, 576
BsrI	ACTGG	4 cut(s)	23, 328, 428, 481
BssECI	CCNNGG	5 cut(s)	61, 62, 103, 311, 564
BssMI	GATC	5 cut(s)	192, 568, 619, 709, 713
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	2 cut(s)	311, 564
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	2 cut(s)	63, 104
Bst4CI	ACNGT	3 cut(s)	157, 170, 395
Bst6I	CTCTTC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	69, 506
BstDEI	CTNAG	3 cut(s)	500, 573, 582
BstF5I	GGATG	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	5 cut(s)	195, 571, 622, 712, 716
BstMAI	GTCTC	2 cut(s)	146, 659
BstMBI	GATC	5 cut(s)	192, 568, 619, 709, 713
BstMCI	CGRYCG	1 cut(s)	712
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 108, 143, 470, 649
BstNI	CCWGG	2 cut(s)	63, 104
BstSCI	CCNGG	2 cut(s)	61, 102
BstSFI	CTRYAG	2 cut(s)	669, 717
BstV1I	GCAGC	5 cut(s)	120, 350, 448, 548, 731
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	712
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	2 cut(s)	80, 498
BsuTUI	ATCGAT	1 cut(s)	712
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	3 cut(s)	400, 629, 701
Cac8I	GCNNGC	2 cut(s)	69, 506
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	4 cut(s)	11, 58, 308, 496
ClaI	ATCGAT	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	398
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviAII	CATG	3 cut(s)	215, 288, 738
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	3 cut(s)	500, 573, 582
DpnI	GATC	5 cut(s)	194, 570, 621, 711, 715
DpnII	GATC	5 cut(s)	192, 568, 619, 709, 713
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	2 cut(s)	311, 564
Eco147I	AGGCCT	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	3 cut(s)	11, 58, 308
Eco81I	CCTNAGG	1 cut(s)	582
EcoRII	CCWGG	2 cut(s)	61, 102
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	311, 564
EcoT22I	ATGCAT	1 cut(s)	493
ErhI	CCWWGG	2 cut(s)	311, 564
FaeI	CATG	3 cut(s)	218, 291, 741
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	3 cut(s)	214, 287, 737
FauNDI	CATATG	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	5 cut(s)	109, 339, 462, 537, 720
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	5 cut(s)	109, 339, 462, 537, 720
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	5 cut(s)	109, 339, 462, 537, 720
GsaI	CCCAGC	1 cut(s)	427
GsuI	CTGGAG	2 cut(s)	384, 464
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	80, 498
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	218, 291, 741
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	2 cut(s)	514, 577
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	2 cut(s)	398, 610
Hpy188I	TCNGA	2 cut(s)	487, 519
Hpy188III	TCNNGA	3 cut(s)	14, 94, 581
Hpy8I	GTNNAC	2 cut(s)	398, 610
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	3 cut(s)	157, 170, 395
HpyCH4V	TGCA	7 cut(s)	146, 214, 338, 491, 536, 671, 719
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 108, 143, 470, 649
HpyF3I	CTNAG	3 cut(s)	500, 573, 582
Hsp92II	CATG	3 cut(s)	218, 291, 741
HspAI	GCGC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	5 cut(s)	192, 568, 619, 709, 713
LmnI	GCTCC	1 cut(s)	679
Lsp1109I	GCAGC	5 cut(s)	120, 350, 448, 548, 731
LweI	GCATC	3 cut(s)	448, 478, 500
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	5 cut(s)	194, 570, 621, 711, 715
MboI	GATC	5 cut(s)	192, 568, 619, 709, 713
MboII	GAAGA	5 cut(s)	97, 250, 330, 398, 608
MflI	RGATCY	1 cut(s)	568
MluCI	AATT	6 cut(s)	35, 273, 350, 371, 531, 727
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	4 cut(s)	70, 348, 577, 670
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	63, 104
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	2 cut(s)	63, 104
MwoI	GCNNNNNNNGC	5 cut(s)	77, 108, 143, 470, 649
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	5 cut(s)	192, 568, 619, 709, 713
NlaIII	CATG	3 cut(s)	218, 291, 741
NlaIV	GGNNCC	3 cut(s)	60, 309, 570
NmeAIII	GCCGAG	1 cut(s)	713
NsiI	ATGCAT	1 cut(s)	493
PasI	CCCWGGG	1 cut(s)	62
PceI	AGGCCT	1 cut(s)	80
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	514, 577
PkrI	GCNGC	5 cut(s)	110, 340, 463, 538, 721
Ple19I	CGATCG	1 cut(s)	712
Psp6I	CCWGG	2 cut(s)	61, 102
PspFI	CCCAGC	1 cut(s)	423
PspGI	CCWGG	2 cut(s)	61, 102
PspN4I	GGNNCC	3 cut(s)	60, 309, 570
PspPI	GGNCC	4 cut(s)	11, 58, 308, 496
PstI	CTGCAG	2 cut(s)	673, 721
PsuI	RGATCY	1 cut(s)	568
PvuI	CGATCG	1 cut(s)	712
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	5 cut(s)	109, 339, 462, 537, 720
Sau3AI	GATC	5 cut(s)	192, 568, 619, 709, 713
Sau96I	GGNCC	4 cut(s)	11, 58, 308, 496
ScrFI	CCNGG	2 cut(s)	63, 104
SetI	ASST	6 cut(s)	301, 359, 506, 541, 615, 684
SfaNI	GCATC	3 cut(s)	448, 478, 500
SfcI	CTRYAG	2 cut(s)	669, 717
SinI	GGWCC	3 cut(s)	11, 58, 308
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	6 cut(s)	35, 273, 350, 371, 531, 727
SseBI	AGGCCT	1 cut(s)	80
SspI	AATATT	2 cut(s)	31, 405
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	61, 102
StyI	CCWWGG	2 cut(s)	311, 564
TaaI	ACNGT	3 cut(s)	157, 170, 395
TaqI	TCGA	1 cut(s)	712
TasI	AATT	6 cut(s)	35, 273, 350, 371, 531, 727
TfiI	GAWTC	2 cut(s)	514, 577
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TscAI	CASTG	3 cut(s)	400, 629, 708
TseI	GCWGC	5 cut(s)	108, 338, 461, 536, 719
TspDTI	ATGAA	3 cut(s)	231, 363, 621
TspRI	CASTG	3 cut(s)	400, 629, 708
VpaK11BI	GGWCC	3 cut(s)	11, 58, 308
XapI	RAATTY	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.