Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010468

Physical Location & Seq

Genomic Coordinates Forward (+)

3162046 .. 3164702

Gene Structure 2657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAGCAGCGATGGGACTGATGCGTCGGATGCCTCCCAAGCACACTGAGACGGCTCTCTCCGCCCTTCTCTCCCTTCTCCCCCAGCACTCCTCCGATCGATCCTCTCTCAAGTCGATCAGCCTCTCCAGGTTTTGTGCGATATGGAATACGGGAAGGAGTTCATTTTGTGTGAATATAACAGAGATGCAGACTCTTACAGCACCTTGGTCAAACAAATATCATCCGCTGCTAGAAGACGGCAGCCTCCCATCTTTAGAGTTGAGGAAACTTGAAGTTGAAGCAAACGACATCTTTGCCGTATATCGTGACCAGTACTATGAAGGTGGCATTTCTTCAGTTTATATGTGGGAGGATGACAACGAAGGTTTTGTCGGCTGCTTTTTAATCAAGAAAGATGGCTCCAAGACAGGGCAAGGCCGGAGGGGTTATCTGCAGGAGGGGGCATGGGATGCTATACATGTGATTGAGGTGGGTCCGGAGGAGGAAGGGACAGCCCAATACCGTTTAACCAGCACTGTCATGCTGTCTTTGACTACAGATAATGAGTCATCAGGCACATTCTGTTTGTCTGGATCAATTAGACGACAGATGAATATGCACCTCTCAATTCAAGAAGGCCATATTTGTAACATGGGAAGAATGATCGAAGAAATGGAGAGCAAGCTGAGAAATTCACTCGATCAGGTTTATTTTGGGAAGACGAAAGAGATGGTTTGCACTTTACGACCACCATCTGAAGTAGTGATGAGACTGCCTGACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005884 GO:0006950 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0008290 GO:0009266 GO:0009408 GO:0009628 GO:0009653 GO:0009987 GO:0010639 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030834 GO:0030835 GO:0030837 GO:0031333 GO:0032271 GO:0032272 GO:0032502 GO:0032535 GO:0032956 GO:0032970 GO:0032989 GO:0032991 GO:0033043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043242 GO:0043244 GO:0043254 GO:0044087 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051016 GO:0051128 GO:0051129 GO:0051493 GO:0051494 GO:0051693 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0110053 GO:1901879 GO:1901880 GO:1902903 GO:1902904

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

F_actin_cap_B

Protein Analysis

256

Amino Acids

28.73

Weight (kDa)

5.45

Isoelectric Point (pI)

56.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F_actin_cap_B	PF01115	1 - 239	1.6e-72	F-actin capping protein, beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71790
fragaria_vesca	FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750 FvH4_2g12750
malus_domestica	MD05G1037000.v1.1 MD10G1039400.v1.1
prunus_persica	Prupe.8G045100_v2.0.a1
pyrus_communis	pycom05g02730 pycom10g02820
rosa_chinensis	RchiOBHm_Chr6g0273541
rosa_laevigata	RLG00000013609
rosa_multiflora	Rmu_sc0001180.1_g000003 Rmu_sc0001419.1_g000003
rosa_roxburghii	Rroxscaffold_7G00195230
rosa_rugosa	Rorug06G0076100
rosa_samantha	Rh6AG190800 Rh6BG194300 Rh6CG193900
rosa_wichuraiana	Rw6G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	2 cut(s)	63, 227
AclWI	GGATC	2 cut(s)	96, 583
AcsI	RAATTY	1 cut(s)	673
AcuI	CTGAAG	2 cut(s)	321, 759
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	275, 281, 614
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	667, 765
AluI	AGCT	2 cut(s)	667, 765
Alw26I	GTCTC	2 cut(s)	44, 745
AlwI	GGATC	2 cut(s)	96, 583
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	2 cut(s)	418, 619
ApeKI	GCWGC	4 cut(s)	8, 229, 243, 378
ApoI	RAATTY	1 cut(s)	673
ArsI	GACNNNNNNTTYG	2 cut(s)	357, 389
Asp700I	GAANNNNTTC	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	476
BbsI	GAAGAC	2 cut(s)	243, 707
BbvI	GCAGC	4 cut(s)	20, 216, 255, 365
BccI	CCATC	5 cut(s)	7, 259, 392, 706, 742
BceAI	ACGGC	3 cut(s)	69, 256, 284
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	44, 745
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	2 cut(s)	434, 537
BisI	GCNGC	4 cut(s)	9, 230, 244, 379
BlsI	GCNGC	4 cut(s)	10, 231, 245, 380
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	2 cut(s)	403, 477
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	4 cut(s)	12, 21, 177, 442
BpiI	GAAGAC	2 cut(s)	243, 707
BpmI	CTGGAG	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse1I	ACTGG	1 cut(s)	313
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	130
BseCI	ATCGAT	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	4 cut(s)	36, 223, 361, 457
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMII	CTCAG	2 cut(s)	39, 659
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	2 cut(s)	82, 497
BseXI	GCAGC	4 cut(s)	20, 216, 255, 365
BseYI	CCCAGC	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	2 cut(s)	420, 621
BshVI	ATCGAT	1 cut(s)	100
BsiEI	CGRYCG	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	421, 479
BslFI	GGGAC	2 cut(s)	30, 505
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmAI	GTCTC	2 cut(s)	44, 745
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	2 cut(s)	30, 505
BsnI	GGCC	2 cut(s)	420, 621
Bsp13I	TCCGGA	1 cut(s)	478
Bsp143I	GATC	6 cut(s)	97, 101, 117, 575, 645, 682
BspACI	CCGC	2 cut(s)	63, 227
BspANI	GGCC	2 cut(s)	420, 621
BspCNI	CTCAG	2 cut(s)	40, 660
BspDI	ATCGAT	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	403, 477
BspMAI	CTGCAG	1 cut(s)	438
BspPI	GGATC	2 cut(s)	96, 583
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	6 cut(s)	97, 101, 117, 575, 645, 682
BssT1I	CCWWGG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	506, 520
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	665
BstDEI	CTNAG	2 cut(s)	48, 668
BstF5I	GGATG	4 cut(s)	36, 223, 361, 457
BstKTI	GATC	6 cut(s)	100, 104, 120, 578, 648, 685
BstMAI	GTCTC	2 cut(s)	44, 745
BstMBI	GATC	6 cut(s)	97, 101, 117, 575, 645, 682
BstMCI	CGRYCG	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 40, 62, 452
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	464
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	2 cut(s)	434, 537
BstV1I	GCAGC	4 cut(s)	20, 216, 255, 365
BstV2I	GAAGAC	2 cut(s)	243, 707
Bsu15I	ATCGAT	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	420, 621
BsuTUI	ATCGAT	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	4 cut(s)	36, 223, 361, 457
BtsIMutI	CAGTG	2 cut(s)	45, 516
Cac8I	GCNNGC	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	476
ClaI	ATCGAT	1 cut(s)	100
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	4 cut(s)	447, 461, 523, 634
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	48, 668
DpnI	GATC	6 cut(s)	99, 103, 119, 577, 647, 684
DpnII	GATC	6 cut(s)	97, 101, 117, 575, 645, 682
DrdI	GACNNNNNNGTC	1 cut(s)	24
DseDI	GACNNNNNNGTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	476
Eco57I	CTGAAG	2 cut(s)	321, 759
EcoRII	CCWGG	1 cut(s)	128
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	4 cut(s)	450, 464, 526, 637
FaqI	GGGAC	2 cut(s)	30, 505
FatI	CATG	4 cut(s)	446, 460, 522, 633
Fnu4HI	GCNGC	4 cut(s)	9, 230, 244, 379
FokI	GGATG	4 cut(s)	43, 210, 368, 464
Fsp4HI	GCNGC	4 cut(s)	9, 230, 244, 379
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	4 cut(s)	9, 230, 244, 379
GsaI	CCCAGC	1 cut(s)	88
GsuI	CTGGAG	1 cut(s)	112
HaeIII	GGCC	2 cut(s)	420, 621
HapII	CCGG	2 cut(s)	421, 479
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	4 cut(s)	450, 464, 526, 637
HinfI	GANTC	2 cut(s)	193, 548
HpaII	CCGG	2 cut(s)	421, 479
Hpy188I	TCNGA	3 cut(s)	30, 97, 739
Hpy188III	TCNNGA	5 cut(s)	308, 391, 479, 573, 614
Hpy99I	CGWCG	1 cut(s)	30
HpyAV	CCTTC	7 cut(s)	77, 86, 150, 317, 359, 482, 611
HpyCH4III	ACNGT	2 cut(s)	506, 520
HpyCH4V	TGCA	4 cut(s)	190, 436, 601, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 40, 62, 452
HpyF3I	CTNAG	2 cut(s)	48, 668
Hsp92II	CATG	4 cut(s)	450, 464, 526, 637
Kpn2I	TCCGGA	1 cut(s)	478
Kzo9I	GATC	6 cut(s)	97, 101, 117, 575, 645, 682
LmnI	GCTCC	1 cut(s)	407
Lsp1109I	GCAGC	4 cut(s)	20, 216, 255, 365
LweI	GCATC	4 cut(s)	12, 21, 177, 442
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	308, 629
MalI	GATC	6 cut(s)	99, 103, 119, 577, 647, 684
MboI	GATC	6 cut(s)	97, 101, 117, 575, 645, 682
MboII	GAAGA	5 cut(s)	248, 327, 651, 662, 712
MluCI	AATT	3 cut(s)	579, 609, 673
MlyI	GAGTC	2 cut(s)	187, 557
MmeI	TCCRAC	1 cut(s)	8
MroI	TCCGGA	1 cut(s)	478
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	2 cut(s)	386, 509
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	229, 765
MspI	CCGG	2 cut(s)	421, 479
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	31, 40, 62, 452
NdeII	GATC	6 cut(s)	97, 101, 117, 575, 645, 682
NlaIII	CATG	4 cut(s)	450, 464, 526, 637
NlaIV	GGNNCC	2 cut(s)	403, 477
NmuCI	GTSAC	1 cut(s)	308
NspI	RCATGY	1 cut(s)	464
PciI	ACATGT	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	160
PkrI	GCNGC	4 cut(s)	10, 231, 245, 380
Ple19I	CGATCG	1 cut(s)	100
PleI	GAGTC	2 cut(s)	187, 556
PpsI	GAGTC	2 cut(s)	187, 556
PscI	ACATGT	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	403, 477
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	438
PvuI	CGATCG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	765
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	386, 509
SatI	GCNGC	4 cut(s)	9, 230, 244, 379
Sau3AI	GATC	6 cut(s)	97, 101, 117, 575, 645, 682
Sau96I	GGNCC	1 cut(s)	476
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	2 cut(s)	187, 557
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	9 cut(s)	134, 208, 328, 370, 474, 606, 669, 690, 767
SfaNI	GCATC	4 cut(s)	12, 21, 177, 442
SfcI	CTRYAG	2 cut(s)	434, 537
SinI	GGWCC	1 cut(s)	476
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	579, 609, 673
SsiI	CCGC	2 cut(s)	63, 227
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	2 cut(s)	506, 520
TaqI	TCGA	4 cut(s)	100, 116, 648, 681
TasI	AATT	3 cut(s)	579, 609, 673
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	386, 509
Tru9I	TTAA	2 cut(s)	386, 509
TscAI	CASTG	2 cut(s)	52, 523
TseFI	GTSAC	1 cut(s)	308
TseI	GCWGC	4 cut(s)	8, 229, 243, 378
Tsp45I	GTSAC	1 cut(s)	308
TspDTI	ATGAA	3 cut(s)	153, 336, 608
TspRI	CASTG	2 cut(s)	52, 523
VpaK11BI	GGWCC	1 cut(s)	476
XapI	RAATTY	1 cut(s)	673
XceI	RCATGY	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	160
XspI	CTAG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.