pycom10g02830

CS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013609
Physical Location & Seq
Reverse (-)
3187220 .. 3189631
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGAGCCGACATCCTAATGTGAAATGGGCCCAGAGGTCTGATATTGTCTACATAACTATTGACTTGCCGGATGCCCAAGATGTTAAGCTTAAACTGGAGCCTGAAGGAAAGTTTTTGTTTTCTGCTACTGTTGGACCAGAGAAGACACCTTATGAAGTTGAGCTCGATCTCTATGACAAGATTGATGTAAATGAGACCAAGTCTAGTGTTGGCTTGAGAAATATCTGTTACCTAGTGAAAAAAGCTGAGGAAAAATGGTGGAGCAGGTTGATAAAACAGCAGGGAAAAGCTCCTATTTTTCTGAAAGTGGATTGGGATAAATGGGTTGATGAAGATGAGGAGCCTGAAGAAGTGAAAGGTGATGAAGGCGGTCCAGGTGGGTTTGGAAATAATATGGACTTTGGTGGACTCGGAAACAATATGGACTTTGGAGGACTCGGAAACAATATGGACTTTGGAGGACTCGGAAACAATATGAACCTCGGGGGACTTGGAAACAATATGAACTTTGGGGACTTTGATATGTCTAAGTTGAACATGGGTGGCGGTGGCTCGAGTGCTGACGCTCTTGGCAAGTTTGATGCAGAGAATGATGATAGTGACACAGAGGACGAAACTGCTGGAGAATCTGATGCCAAACCTCCTGCGAGTGCTGAGCATGACGCAAAGGCTTCTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko01100 map00590 map01100
Pfam Domains
Protein Families
CS

Protein Analysis

227

Amino Acids

24.61

Weight (kDa)

4.35

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CS PF04969 5 - 81 6.7e-10 CS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013609)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g12740 FvH4_2g12740
malus_domestica MD05G1037300.v1.1 MD10G1041200.v1.1
prunus_persica Prupe.8G045200_v2.0.a1 Prupe.8G045200_v2.0.a1
pyrus_communis pycom05g02760 pycom10g02830
rosa_chinensis RchiOBHm_Chr6g0273521
rosa_laevigata RLG00000013610
rosa_multiflora Rmu_sc0001419.1_g000004
rosa_roxburghii Rroxscaffold_7G00195260
rosa_rugosa Rorug06G0076000
rosa_samantha Rh6AG190700 Rh6CG193800 Rh6DG185600
rosa_wichuraiana Rw6G005270 Rw6G016690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AccI GTMKAC 1 cut(s) 48
AciI CCGC 2 cut(s) 369, 546
AcuI CTGAAG 2 cut(s) 123, 366
AgsI TTSAA 1 cut(s) 535
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 4 cut(s) 88, 163, 245, 290
AluI AGCT 4 cut(s) 88, 163, 245, 290
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 188
Ama87I CYCGRG 2 cut(s) 482, 553
AoxI GGCC 1 cut(s) 27
ApaI GGGCCC 1 cut(s) 31
AspS9I GGNCC 4 cut(s) 27, 28, 134, 371
AsuHPI GGTGA 1 cut(s) 371
AvaI CYCGRG 2 cut(s) 482, 553
AvaII GGWCC 2 cut(s) 134, 371
BaeGI GKGCMC 1 cut(s) 31
BanII GRGCYC 2 cut(s) 31, 165
BbsI GAAGAC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 188
BfaI CTAG 2 cut(s) 204, 233
BfuAI ACCTGC 1 cut(s) 255
BlpI GCTNAGC 1 cut(s) 654
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 2 cut(s) 134, 371
BmeT110I CYCGRG 2 cut(s) 482, 553
BmgT120I GGNCC 4 cut(s) 27, 28, 134, 371
BmiI GGNNCC 3 cut(s) 29, 99, 342
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 61, 571, 622
BpiI GAAGAC 1 cut(s) 149
BpmI CTGGAG 2 cut(s) 116, 642
Bpu10I CCTNAGC 1 cut(s) 246
Bpu1102I GCTNAGC 1 cut(s) 654
BpuEI CTTGAG 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 188
BsaJI CCNNGG 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 481
BseGI GGATG 2 cut(s) 10, 76
BseMII CTCAG 2 cut(s) 237, 645
BseNI ACTGG 1 cut(s) 99
BseRI GAGGAG 1 cut(s) 353
BseSI GKGCMC 1 cut(s) 31
BshFI GGCC 1 cut(s) 29
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 2 cut(s) 482, 553
BsiSI CCGG 1 cut(s) 68
BslFI GGGAC 2 cut(s) 501, 527
BsmAI GTCTC 1 cut(s) 188
BsmFI GGGAC 2 cut(s) 501, 527
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 188
BsoBI CYCGRG 2 cut(s) 482, 553
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 31, 165
Bsp143I GATC 1 cut(s) 166
Bsp1720I GCTNAGC 1 cut(s) 654
BspACI CCGC 2 cut(s) 369, 546
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 238, 646
BspLI GGNNCC 3 cut(s) 29, 99, 342
BspMI ACCTGC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 188
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 130
BstDEI CTNAG 3 cut(s) 246, 528, 654
BstF5I GGATG 2 cut(s) 10, 76
BstKTI GATC 1 cut(s) 169
BstMAI GTCTC 1 cut(s) 188
BstMBI GATC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 373
BstSLI GKGCMC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 29
BtsCI GGATG 2 cut(s) 10, 76
BveI ACCTGC 1 cut(s) 255
Cfr13I GGNCC 4 cut(s) 27, 28, 134, 371
CseI GACGC 2 cut(s) 572, 671
CviAII CATG 2 cut(s) 538, 659
DdeI CTNAG 3 cut(s) 246, 528, 654
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 2 cut(s) 31, 165
Eco31I GGTCTC 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 134, 371
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 123, 366
Eco88I CYCGRG 2 cut(s) 482, 553
EcoICRI GAGCTC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 373
EcoT38I GRGCYC 2 cut(s) 31, 165
FaeI CATG 2 cut(s) 541, 662
FaqI GGGAC 2 cut(s) 501, 527
FatI CATG 2 cut(s) 537, 658
FblI GTMKAC 1 cut(s) 48
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 2 cut(s) 31, 165
FspBI CTAG 2 cut(s) 204, 233
GsuI CTGGAG 2 cut(s) 116, 642
HaeIII GGCC 1 cut(s) 29
HapII CCGG 1 cut(s) 68
HgaI GACGC 2 cut(s) 572, 671
Hin1II CATG 2 cut(s) 541, 662
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 4 cut(s) 408, 435, 462, 626
HpaII CCGG 1 cut(s) 68
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 2 cut(s) 49, 407
Hpy188I TCNGA 7 cut(s) 40, 303, 413, 440, 467, 631, 680
Hpy8I GTNNAC 2 cut(s) 49, 407
HpyAV CCTTC 2 cut(s) 98, 359
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 1 cut(s) 584
HpyF3I CTNAG 3 cut(s) 246, 528, 654
Hsp92II CATG 2 cut(s) 541, 662
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 4 cut(s) 97, 261, 295, 340
LweI GCATC 3 cut(s) 61, 571, 622
MaeI CTAG 2 cut(s) 204, 233
MaeIII GTNAC 2 cut(s) 227, 599
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 3 cut(s) 154, 344, 359
MhlI GDGCHC 2 cut(s) 31, 165
MlyI GAGTC 3 cut(s) 402, 429, 456
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 8 cut(s) 27, 241, 331, 425, 452, 491, 601, 651
MseI TTAA 2 cut(s) 84, 90
MslI CAYNNNNRTG 1 cut(s) 15
MspI CCGG 1 cut(s) 68
MspR9I CCNGG 1 cut(s) 375
MvaI CCWGG 1 cut(s) 375
NdeII GATC 1 cut(s) 166
NlaIII CATG 2 cut(s) 541, 662
NlaIV GGNNCC 3 cut(s) 29, 99, 342
NmuCI GTSAC 1 cut(s) 599
PaeR7I CTCGAG 1 cut(s) 553
PfeI GAWTC 1 cut(s) 626
PflFI GACNNNGTC 1 cut(s) 199
PleI GAGTC 3 cut(s) 402, 429, 456
PpsI GAGTC 3 cut(s) 402, 429, 456
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 3 cut(s) 29, 99, 342
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 4 cut(s) 27, 28, 134, 371
PspXI VCTCGAGB 1 cut(s) 553
PsyI GACNNNGTC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 84, 90
Sau3AI GATC 1 cut(s) 166
Sau96I GGNCC 4 cut(s) 27, 28, 134, 371
SchI GAGTC 3 cut(s) 402, 429, 456
ScrFI CCNGG 1 cut(s) 375
SduI GDGCHC 2 cut(s) 31, 165
SfaNI GCATC 3 cut(s) 61, 571, 622
Sfr274I CTCGAG 1 cut(s) 553
SinI GGWCC 2 cut(s) 134, 371
SlaI CTCGAG 1 cut(s) 553
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 2 cut(s) 214, 553
SmoI CTYRAG 2 cut(s) 214, 553
SsiI CCGC 2 cut(s) 369, 546
SspMI CTAG 2 cut(s) 204, 233
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 165, 554
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 2 cut(s) 84, 90
Tru9I TTAA 2 cut(s) 84, 90
TseFI GTSAC 1 cut(s) 599
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 5 cut(s) 168, 345, 378, 491, 518
Tth111I GACNNNGTC 1 cut(s) 199
VpaK11BI GGWCC 2 cut(s) 134, 371
XhoI CTCGAG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 2 cut(s) 204, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.