Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007265

Physical Location & Seq

Genomic Coordinates Forward (+)

4592180 .. 4595064

Gene Structure 2885 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGCTACCTGATGAGGAGGCCGTCGCCAACGGAGAGGCGGAGGAAATGAACAGAGAGCTCTCTGCGGAGGCTCCTCTCCGGGAGCCCCATTCCTACCAGAGTCATTTTGGGGGGATGGTGAGGAAGAAAGCTTATATCTTTGATGGTCTTGGAAATTTTTACAACAAGGAATGGGATCTTACAGAAGGTAGAGGCAATGAGTTCTGTTGGTACCATGTTGAACTTCCAAAAGGACATCAGAAGCTTTCTCAGTCTGCACAATACCTCATTGGTGTTCTTTGCCCGCCTTTGAAACTTCAGGATATTCTCTCTCTTGTCAGCAATGGACCATTTTGTGGGTATGTTGATGGGGCTCTGGTCTTCAGAGTCAACTCTCCTGGCCCTCCCTCCAGTGATTTCACATTTAGAATTGCCGCAAGAATTACCAAGAATTCAGTTATCACTGTGTCTTTGGGCCGCGTTCCCAGATTGGGTTTCTCACCGGTGGGTCAATCTCTTCTCTCAGAGATTCCTAGTGTGGAGAGTCCCTCGTATCATAGAGGTGAGCAGAGGGAAAAGAGCGGGATTGTCATAGGGGAGCATGTTCTTGAGTTCTTATTGACAATGAATCACTCTGAGGAAGCTGATAATCCCGTGCCAAAATCTGTCTCAAATCTTGTAGTTCATATTGTTGACACGCATTTGGACCACCTCCAAGATGTTGTGACTAAACTTGAGATAGAGTTGGATTCTGTTGAGCTTCAGATGGATAAAGGTGGGCTTGCTTTAAAGAAACAAATGCTGGATGACAGGAGATTTCCTAAAATGCATCTAGATCTGCAGCGGCTCCTACAGGTGATTGCTCATGGGGAGCAAGTTTTTCCTCGTGTCAGAGAAAGATGTTCCTCTAAGCAATGGTTTTTGAGTGAAGATATTACCTCTCTTGAAGAGTTGATCGGACGGTTGAGGAGGCTAAAGGAGAATGTAGGCTTTATAGCAAATCGTGTCACGGCAATACAGGCTGTGTTTGGCATGAATGTGGGGGGAGTTCCATGGACGGAACAAAAAAACCCAACGGTGAAAAATGGTTTCCGTAATGTCATGTTACTCTGTGTAGCTATGCTTCTTCTGGCACTTCTCTGCTTCAGCTTTCCTGTTTTTTATACCCGAATAGCTGCTTGGCACAGGAGAAGAGCCATGAAGAGGAGCTGGTCCCTCAACAGGAAATCATACCTAAAGAGAACCCATGGAATTGAAGCTCAAGAAAGAAGGGGCTACCTCCGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CorA

Protein Analysis

424

Amino Acids

48.06

Weight (kDa)

8.63

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04305
fragaria_vesca	FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180 FvH4_2g11180
malus_domestica	MD05G1049600.v1.1 MD10G1056700.v1.1
prunus_persica	Prupe.8G074900_v2.0.a1 Prupe.8G074900_v2.0.a1
pyrus_communis	pycom10g04360
rosa_chinensis	RchiOBHm_Chr6g0269501
rosa_laevigata	RLG00000013846
rosa_multiflora	Rmu_sc0010883.1_g000007
rosa_roxburghii	Rroxscaffold_7G00198670
rosa_rugosa	Rorug06G0048700 Rorug06G0048800
rosa_samantha	Rh6AG168700 Rh6BG174000 Rh6CG168300 Rh6DG160300
rosa_wichuraiana	Rw6G014520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	213
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	564
AccII	CGCG	1 cut(s)	462
AciI	CCGC	8 cut(s)	41, 68, 287, 417, 460, 564, 826, 1264
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	2 cut(s)	157, 433
AcuI	CTGAAG	4 cut(s)	284, 349, 728, 1111
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	4 cut(s)	338, 473, 1185, 1203
AgeI	ACCGGT	1 cut(s)	484
AgsI	TTSAA	4 cut(s)	224, 295, 929, 1238
AjnI	CCWGG	1 cut(s)	379
AjuI	GAANNNNNNNTTGG	2 cut(s)	1144, 1176
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	1 cut(s)	655
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	3 cut(s)	21, 382, 457
ApeKI	GCWGC	2 cut(s)	823, 1157
ApoI	RAATTY	2 cut(s)	157, 433
AsiGI	ACCGGT	1 cut(s)	484
Asp718I	GGTACC	1 cut(s)	213
AspS9I	GGNCC	5 cut(s)	329, 383, 457, 688, 1194
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	5 cut(s)	133, 474, 557, 850, 1072
AvaII	GGWCC	3 cut(s)	329, 688, 1194
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	3 cut(s)	63, 90, 358
BarI	GAAGNNNNNNTAC	2 cut(s)	1089, 1121
BauI	CACGAG	1 cut(s)	867
BbsI	GAAGAC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	835, 1144
BccI	CCATC	4 cut(s)	112, 140, 344, 742
BceAI	ACGGC	2 cut(s)	8, 1008
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	655
BfaI	CTAG	2 cut(s)	516, 815
BfmI	CTRYAG	2 cut(s)	821, 833
BglII	AGATCT	1 cut(s)	817
BisI	GCNGC	5 cut(s)	417, 460, 824, 827, 1158
BlsI	GCNGC	5 cut(s)	418, 461, 825, 828, 1159
Bme1390I	CCNGG	2 cut(s)	83, 381
Bme18I	GGWCC	3 cut(s)	329, 688, 1194
BmgT120I	GGNCC	5 cut(s)	329, 383, 457, 688, 1194
BmiI	GGNNCC	5 cut(s)	75, 87, 215, 830, 1196
BmrFI	CCNGG	2 cut(s)	83, 381
BmsI	GCATC	1 cut(s)	820
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	1 cut(s)	376
BpuEI	CTTGAG	3 cut(s)	611, 737, 1227
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	1034, 1228
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 473, 1185, 1203
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	393
Bse3DI	GCAATG	3 cut(s)	205, 331, 902
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	1034, 1228
BseGI	GGATG	2 cut(s)	123, 793
BseLI	CCNNNNNNNGG	4 cut(s)	338, 473, 1185, 1203
BseMI	GCAATG	3 cut(s)	205, 331, 902
BseMII	CTCAG	3 cut(s)	266, 519, 609
BseNI	ACTGG	1 cut(s)	393
BseRI	GAGGAG	4 cut(s)	32, 66, 964, 1201
BseXI	GCAGC	2 cut(s)	835, 1144
BsgI	GTGCAG	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	462
BshFI	GGCC	3 cut(s)	23, 384, 459
BshNI	GGYRCC	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	484
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	82, 485
BslFI	GGGAC	2 cut(s)	513, 1180
BslI	CCNNNNNNNGG	4 cut(s)	338, 473, 1185, 1203
BsmAI	GTCTC	1 cut(s)	655
BsmFI	GGGAC	2 cut(s)	513, 1180
BsnI	GGCC	3 cut(s)	23, 384, 459
Bsp1286I	GDGCHC	3 cut(s)	63, 90, 358
Bsp143I	GATC	3 cut(s)	178, 817, 936
Bsp19I	CCATGG	2 cut(s)	1034, 1228
BspACI	CCGC	8 cut(s)	41, 68, 287, 417, 460, 564, 826, 1264
BspANI	GGCC	3 cut(s)	23, 384, 459
BspCNI	CTCAG	3 cut(s)	265, 518, 610
BspFNI	CGCG	1 cut(s)	462
BspLI	GGNNCC	5 cut(s)	75, 87, 215, 830, 1196
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	1168
BspT107I	GGYRCC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	564
BsrDI	GCAATG	3 cut(s)	205, 331, 902
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	393
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	1034, 1228
BssMI	GATC	3 cut(s)	178, 817, 936
BssSI	CACGAG	1 cut(s)	867
BssT1I	CCWWGG	2 cut(s)	1034, 1228
Bst2BI	CACGAG	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	448, 945, 1060
Bst6I	CTCTTC	4 cut(s)	504, 924, 1168, 1178
BstC8I	GCNNGC	2 cut(s)	287, 765
BstDEI	CTNAG	4 cut(s)	252, 505, 618, 891
BstDSI	CCRYGG	2 cut(s)	1034, 1228
BstF5I	GGATG	2 cut(s)	123, 793
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	3 cut(s)	181, 820, 939
BstMAI	GTCTC	1 cut(s)	655
BstMBI	GATC	3 cut(s)	178, 817, 936
BstMWI	GCNNNNNNNGC	2 cut(s)	1001, 1263
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	587
BstSCI	CCNGG	2 cut(s)	81, 379
BstSFI	CTRYAG	2 cut(s)	821, 833
BstUI	CGCG	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	835, 1144
BstV2I	GAAGAC	1 cut(s)	355
BstX2I	RGATCY	2 cut(s)	178, 817
BstYI	RGATCY	2 cut(s)	178, 817
BsuRI	GGCC	3 cut(s)	23, 384, 459
BtgI	CCRYGG	2 cut(s)	1034, 1228
BtsCI	GGATG	2 cut(s)	123, 793
BtsIMutI	CAGTG	2 cut(s)	400, 444
Cac8I	GCNNGC	2 cut(s)	287, 765
Cfr10I	RCCGGY	1 cut(s)	484
Cfr13I	GGNCC	5 cut(s)	329, 383, 457, 688, 1194
Csp6I	GTAC	1 cut(s)	214
CspAI	ACCGGT	1 cut(s)	484
CviAII	CATG	8 cut(s)	218, 584, 848, 1015, 1035, 1084, 1180, 1229
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	4 cut(s)	252, 505, 618, 891
DpnI	GATC	3 cut(s)	180, 819, 938
DpnII	GATC	3 cut(s)	178, 817, 936
DraI	TTTAAA	1 cut(s)	771
Eam1104I	CTCTTC	4 cut(s)	504, 924, 1168, 1178
EarI	CTCTTC	4 cut(s)	504, 924, 1168, 1178
EciI	GGCGGA	1 cut(s)	56
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	1034, 1228
Eco24I	GRGCYC	3 cut(s)	63, 90, 358
Eco47I	GGWCC	3 cut(s)	329, 688, 1194
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	4 cut(s)	284, 349, 728, 1111
EcoICRI	GAGCTC	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	2 cut(s)	1034, 1228
EcoT22I	ATGCAT	1 cut(s)	813
EcoT38I	GRGCYC	3 cut(s)	63, 90, 358
ErhI	CCWWGG	2 cut(s)	1034, 1228
FaeI	CATG	8 cut(s)	221, 587, 851, 1018, 1038, 1087, 1183, 1232
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	2 cut(s)	513, 1180
FatI	CATG	8 cut(s)	217, 583, 847, 1014, 1034, 1083, 1179, 1228
FauI	CCCGC	2 cut(s)	294, 557
Fnu4HI	GCNGC	5 cut(s)	417, 460, 824, 827, 1158
FokI	GGATG	2 cut(s)	130, 800
FriOI	GRGCYC	3 cut(s)	63, 90, 358
Fsp4HI	GCNGC	5 cut(s)	417, 460, 824, 827, 1158
FspBI	CTAG	2 cut(s)	516, 815
GluI	GCNGC	5 cut(s)	417, 460, 824, 827, 1158
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	3 cut(s)	23, 384, 459
HapII	CCGG	2 cut(s)	82, 485
Hin1II	CATG	8 cut(s)	221, 587, 851, 1018, 1038, 1087, 1183, 1232
HincII	GTYRAC	2 cut(s)	373, 676
HindII	GTYRAC	2 cut(s)	373, 676
HindIII	AAGCTT	2 cut(s)	132, 245
HinfI	GANTC	6 cut(s)	103, 369, 511, 526, 610, 731
HpaII	CCGG	2 cut(s)	82, 485
HphI	GGTGA	5 cut(s)	133, 474, 557, 850, 1072
Hpy166II	GTNNAC	2 cut(s)	373, 676
Hpy188I	TCNGA	7 cut(s)	243, 368, 508, 619, 747, 875, 941
Hpy188III	TCNNGA	5 cut(s)	302, 590, 815, 926, 1244
Hpy8I	GTNNAC	2 cut(s)	373, 676
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	182, 1245
HpyCH4III	ACNGT	3 cut(s)	448, 945, 1060
HpyCH4V	TGCA	3 cut(s)	260, 811, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1001, 1263
HpyF3I	CTNAG	4 cut(s)	252, 505, 618, 891
Hsp92II	CATG	8 cut(s)	221, 587, 851, 1018, 1038, 1087, 1183, 1232
KpnI	GGTACC	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	178, 817, 936
LguI	GCTCTTC	1 cut(s)	1168
LmnI	GCTCC	7 cut(s)	4, 79, 85, 580, 834, 853, 1188
Lsp1109I	GCAGC	2 cut(s)	835, 1144
LweI	GCATC	1 cut(s)	820
MaeI	CTAG	2 cut(s)	516, 815
MaeIII	GTNAC	3 cut(s)	706, 988, 1086
MalI	GATC	3 cut(s)	180, 819, 938
MbiI	CCGCTC	1 cut(s)	564
MboI	GATC	3 cut(s)	178, 817, 936
MboII	GAAGA	8 cut(s)	139, 355, 491, 923, 941, 1100, 1185, 1195
MflI	RGATCY	2 cut(s)	178, 817
MhlI	GDGCHC	3 cut(s)	63, 90, 358
MluCI	AATT	5 cut(s)	157, 411, 423, 433, 1233
MlyI	GAGTC	3 cut(s)	112, 378, 535
MmeI	TCCRAC	1 cut(s)	708
Mph1103I	ATGCAT	1 cut(s)	813
MseI	TTAA	1 cut(s)	770
MslI	CAYNNNNRTG	2 cut(s)	543, 1019
MspA1I	CMGCKG	1 cut(s)	826
MspI	CCGG	2 cut(s)	82, 485
MspR9I	CCNGG	2 cut(s)	83, 381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	2 cut(s)	1001, 1263
NciI	CCSGG	1 cut(s)	83
NcoI	CCATGG	2 cut(s)	1034, 1228
NdeII	GATC	3 cut(s)	178, 817, 936
NlaIII	CATG	8 cut(s)	221, 587, 851, 1018, 1038, 1087, 1183, 1232
NlaIV	GGNNCC	5 cut(s)	75, 87, 215, 830, 1196
NmuCI	GTSAC	2 cut(s)	706, 988
NsiI	ATGCAT	1 cut(s)	813
NspI	RCATGY	1 cut(s)	587
PciSI	GCTCTTC	1 cut(s)	1168
PfeI	GAWTC	3 cut(s)	511, 610, 731
PflMI	CCANNNNNTGG	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	81
PinAI	ACCGGT	1 cut(s)	484
PkrI	GCNGC	5 cut(s)	418, 461, 825, 828, 1159
PleI	GAGTC	3 cut(s)	111, 377, 534
PpsI	GAGTC	3 cut(s)	111, 377, 534
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	5 cut(s)	75, 87, 215, 830, 1196
PspPI	GGNCC	5 cut(s)	329, 383, 457, 688, 1194
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	2 cut(s)	178, 817
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	2 cut(s)	543, 1019
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	1168
SaqAI	TTAA	1 cut(s)	770
SatI	GCNGC	5 cut(s)	417, 460, 824, 827, 1158
Sau3AI	GATC	3 cut(s)	178, 817, 936
Sau96I	GGNCC	5 cut(s)	329, 383, 457, 688, 1194
SchI	GAGTC	3 cut(s)	112, 378, 535
ScrFI	CCNGG	2 cut(s)	83, 381
SduI	GDGCHC	3 cut(s)	63, 90, 358
SfaNI	GCATC	1 cut(s)	820
SfcI	CTRYAG	2 cut(s)	821, 833
SgrAI	CRCCGGYG	1 cut(s)	484
SinI	GGWCC	3 cut(s)	329, 688, 1194
SmiMI	CAYNNNNRTG	2 cut(s)	543, 1019
SmlI	CTYRAG	3 cut(s)	590, 716, 1242
SmoI	CTYRAG	3 cut(s)	590, 716, 1242
Sse9I	AATT	5 cut(s)	157, 411, 423, 433, 1233
SsiI	CCGC	8 cut(s)	41, 68, 287, 417, 460, 564, 826, 1264
SspMI	CTAG	2 cut(s)	516, 815
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	81, 379
StyI	CCWWGG	2 cut(s)	1034, 1228
TaaI	ACNGT	3 cut(s)	448, 945, 1060
TasI	AATT	5 cut(s)	157, 411, 423, 433, 1233
TauI	GCSGC	3 cut(s)	419, 462, 829
TfiI	GAWTC	3 cut(s)	511, 610, 731
Tru1I	TTAA	1 cut(s)	770
Tru9I	TTAA	1 cut(s)	770
TscAI	CASTG	2 cut(s)	400, 451
TseFI	GTSAC	2 cut(s)	706, 988
TseI	GCWGC	2 cut(s)	823, 1157
Tsp45I	GTSAC	2 cut(s)	706, 988
TspDTI	ATGAA	5 cut(s)	65, 623, 656, 1031, 1196
TspGWI	ACGGA	3 cut(s)	48, 1055, 1064
TspRI	CASTG	2 cut(s)	400, 451
Van91I	CCANNNNNTGG	1 cut(s)	338
VpaK11BI	GGWCC	3 cut(s)	329, 688, 1194
XapI	RAATTY	2 cut(s)	157, 433
XbaI	TCTAGA	1 cut(s)	814
XceI	RCATGY	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XspI	CTAG	2 cut(s)	516, 815
Zsp2I	ATGCAT	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.