pycom10g08830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0005104
Physical Location & Seq
Forward (+)
11657516 .. 11658040
525 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 525 bp
ATGGAGCAAAATGGAACTGGATCTTCATTCCAGGTTGGAGAAGTGAAATCTAGTGCAGTGGAAACAAACTCACTTCACAATTTGACGTCTGAAGCTAAAGAGACTGAAGATGGCTTAGACAAGATCCTTGTCAAACCAATGCACAGGTTGGAAGGGGAGAAAATGAAAGCCTCGGAAATGGGAAACAATTATGAATATCATACACTCGAAAAGAAAAAGGGGGGAAACAGTGATTCACAGTGCGAGGGATTGGACAAAGTTTTGGTAAAACATGTTTCCAGACTGGAGAAAGGGAAGATAAAGTTCTGTGCAGAGGAACAAGCAAGTGAAGTGAAGAGAAGTTACGCAAAATTGCATTCACGTGCAGACGAAGCATGTGGTTTGGACCAAATTCTAGTTAAACACAAATCAAGGCTCGAAAGAGAAAAGGATGGTGCTGGTCAGCAACCAGAAGATCAAGTTAGATACTCGGTAAATCGCAAAGAAACAAGGAGAGAGAACTGCAAGAACAATGGAGAGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.58

Weight (kDa)

7.02

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AclWI GGATC 2 cut(s) 28, 118
AcsI RAATTY 1 cut(s) 390
AcuI CTGAAG 2 cut(s) 111, 126
AcvI CACGTG 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 86
AflIII ACRYGT 1 cut(s) 271
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 28, 118
ApoI RAATTY 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 385
AvaII GGWCC 1 cut(s) 385
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BbrPI CACGTG 1 cut(s) 362
BccI CCATC 2 cut(s) 104, 425
BciT130I CCWGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 2 cut(s) 51, 395
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 22, 288
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 436
BseNI ACTGG 2 cut(s) 22, 288
BsgI GTGCAG 3 cut(s) 75, 330, 384
BsmAI GTCTC 1 cut(s) 95
BsmI GAATGC 1 cut(s) 355
Bsp143I GATC 3 cut(s) 20, 123, 454
BspPI GGATC 2 cut(s) 28, 118
BsrI ACTGG 2 cut(s) 22, 288
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 3 cut(s) 20, 123, 454
BssNI GRCGYC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 2 cut(s) 230, 240
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 86
BstBAI YACGTR 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 115
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 3 cut(s) 23, 126, 457
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 3 cut(s) 20, 123, 454
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 2 cut(s) 275, 378
BstSCI CCNGG 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 20, 123
BstYI RGATCY 2 cut(s) 20, 123
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 3 cut(s) 63, 235, 245
Cfr13I GGNCC 1 cut(s) 385
CviAII CATG 2 cut(s) 272, 375
CviJI RGCY 4 cut(s) 95, 114, 170, 415
CviKI_1 RGCY 4 cut(s) 95, 114, 170, 415
DdeI CTNAG 1 cut(s) 115
DpnI GATC 3 cut(s) 22, 125, 456
DpnII GATC 3 cut(s) 20, 123, 454
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco47I GGWCC 1 cut(s) 385
Eco57I CTGAAG 2 cut(s) 111, 126
Eco72I CACGTG 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 30
FaeI CATG 2 cut(s) 275, 378
FaiI YATR 4 cut(s) 192, 201, 273, 376
FatI CATG 2 cut(s) 271, 374
FokI GGATG 1 cut(s) 443
FspBI CTAG 2 cut(s) 51, 395
GsuI CTGGAG 1 cut(s) 305
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 2 cut(s) 275, 378
HinfI GANTC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 91, 175
Hpy188III TCNNGA 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 230, 240
HpyCH4IV ACGT 2 cut(s) 86, 361
HpyCH4V TGCA 6 cut(s) 56, 142, 311, 355, 365, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 2 cut(s) 86, 361
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 2 cut(s) 275, 378
Kzo9I GATC 3 cut(s) 20, 123, 454
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 8 cut(s) 3, 17, 44, 130, 269, 292, 423, 462
MaeI CTAG 2 cut(s) 51, 395
MaeII ACGT 2 cut(s) 86, 361
MaeIII GTNAC 1 cut(s) 341
MalI GATC 3 cut(s) 22, 125, 456
MboI GATC 3 cut(s) 20, 123, 454
MboII GAAGA 5 cut(s) 15, 119, 307, 346, 464
MflI RGATCY 2 cut(s) 20, 123
MluCI AATT 4 cut(s) 79, 187, 350, 390
MmeI TCCRAC 2 cut(s) 16, 129
MnlI CCTC 4 cut(s) 181, 238, 307, 511
MseI TTAA 2 cut(s) 399, 523
MslI CAYNNNNRTG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 32
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 3 cut(s) 20, 123, 454
NlaIII CATG 2 cut(s) 275, 378
NspI RCATGY 2 cut(s) 275, 378
PciI ACATGT 1 cut(s) 271
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 233
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
Ppu21I YACGTR 1 cut(s) 362
PscI ACATGT 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 30
PspCI CACGTG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 30
PspPI GGNCC 1 cut(s) 385
PsuI RGATCY 2 cut(s) 20, 123
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 2 cut(s) 399, 523
Sau3AI GATC 3 cut(s) 20, 123, 454
Sau96I GGNCC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 32
SetI ASST 6 cut(s) 36, 89, 97, 149, 364, 522
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 4 cut(s) 79, 187, 350, 390
SspMI CTAG 2 cut(s) 51, 395
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 230, 240
TaiI ACGT 2 cut(s) 89, 364
TaqI TCGA 2 cut(s) 207, 417
TasI AATT 4 cut(s) 79, 187, 350, 390
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 2 cut(s) 399, 523
Tru9I TTAA 2 cut(s) 399, 523
TscAI CASTG 3 cut(s) 63, 235, 245
TspDTI ATGAA 3 cut(s) 15, 179, 207
TspRI CASTG 3 cut(s) 63, 235, 245
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 1 cut(s) 390
XceI RCATGY 2 cut(s) 275, 378
XspI CTAG 2 cut(s) 51, 395
ZraI GACGTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.