Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013727

Physical Location & Seq

Genomic Coordinates Reverse (-)

12328018 .. 12329661

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAGGAGCTGAGTGAAAATTGCTTCCATGAAGCCACCTACCTAGACCAAGAAGGTAAATTAAGAACTTCCAGAGTGCCCGTGGTTCAAGAACTCGCTCGGCGAGGATTCGACCATTTGCCTGAGAGATTCATAAGGGTGCACCTTGAACACGATTATGATGTTGTCGACTTATCTTTGCTTAATAATGTCTCAGAAGTCCTACCATCCATAAGCATGGCTAAATTACGAGCCCGGTCTGAGTCCACAGACTGGACCCGAGAGCTGGCCGAGCTAGCAAGTGGTGCTAATACTTGGGGTATGCTCATAATCAAGGACCATGGTGTGCCAGGGCATGTTTTAGATGGTGTGAAGGATGTGGTCAAGGAGTTCTTTGGGTTGTCGTTTGAAGAGAAGAAAGCAAGCGTTGGGTCGTATGTGAGTGTGGATAACATGGGATACGGCCGGAACTTTGTGAAGTCGGAAGATCAACCGTTGGATTGGATTGACCGTGTGACTGTGAAAGCAGCTCCTGTCGGAGCAACCCAAGGGCTCCATGTTTGGCCTCAAAGGCCTGCCGATTTCAGGCATGCTATAGAGCAATACGTTCATGAAGCAAGAACCATCTTGAATGACTTACTGGAAGCCCTTGCCGAAGCCTTATCACTAGAAAAACATGTATTCCTCCAAAATTTTGACCCCAAAGACAGTGAGATCAATGTGAGAGTCAACTACTACCCACCATGTCCTAGACCAGACCATGCCCTCGGTCTAACTCCGCATTCGGATGCCAGTGCCCTTACTCTACTTATGCAATTCGACACCGCTGGAGGTCTCCAGGTTTTGAAGGACAAGAAATGGGTGAATGTGCCTTGGCCACCAGAGGCATTGCTAGTGAATATGGGAGATTTACTAGAGATTATGAGCAATGGAAAGTTAAAAAGCCCATGGCATAGGGTTGTGACCCAAATGGATGTTGAGCGCTTCTCAGTGGCTTTGTTCTATAATCCATCACCCCGAACTTTGATTGATCCTATAAGGGATCGTAATTCCTTGAAAGATGAGGGGTATGAGAAGGTGGTTGTGGGTGATTATTTGCAACACTTTTATAGAGTTAGTCCTACTGCGGAGAAACAAGCCATCAACTTTTCCAAAAGACCCAAAACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

383

Amino Acids

43.38

Weight (kDa)

5.72

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	68 - 183	6.5e-18	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	234 - 330	2e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013727)

Species	Orthologous Gene IDs
malus_domestica	MD10G1107900.v1.1
pyrus_communis	pycom10g09320
rosa_chinensis	RchiOBHm_Chr6g0252601
rosa_laevigata	RLG00000015082 RLG00000015086
rosa_multiflora	Rmu_sc0000673.1_g000006 Rmu_sc0002016.1_g000034 Rmu_sc0002016.1_g000042 Rmu_sc0023610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212530 Rroxscaffold_7G00212570
rosa_rugosa	Rorug05G0537200
rosa_samantha	Rh6AG053600 Rh6BG047400 Rh6CG045900 Rh6DG041600
rosa_wichuraiana	Rw6G004810 Rw6G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	168
AciI	CCGC	3 cut(s)	758, 804, 1106
AclWI	GGATC	2 cut(s)	1004, 1029
AcoI	YGGCCR	3 cut(s)	267, 442, 854
AcsI	RAATTY	1 cut(s)	670
AfeI	AGCGCT	1 cut(s)	962
AfiI	CCNNNNNNNGG	3 cut(s)	252, 265, 564
AflIII	ACRYGT	1 cut(s)	655
AgsI	TTSAA	6 cut(s)	89, 149, 389, 610, 826, 1036
AjnI	CCWGG	2 cut(s)	328, 816
AluBI	AGCT	4 cut(s)	10, 265, 274, 509
AluI	AGCT	4 cut(s)	10, 265, 274, 509
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	196, 818
Alw44I	GTGCAC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	1004, 1029
AlwNI	CAGNNNCTG	1 cut(s)	512
Ama87I	CYCGRG	1 cut(s)	258
Aor51HI	AGCGCT	1 cut(s)	962
AoxI	GGCC	5 cut(s)	267, 442, 542, 551, 854
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	506
ApoI	RAATTY	1 cut(s)	670
AspLEI	GCGC	1 cut(s)	963
AspS9I	GGNCC	2 cut(s)	255, 316
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	853, 984, 1079
AsuNHI	GCTAGC	1 cut(s)	274
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	2 cut(s)	255, 316
BaeGI	GKGCMC	3 cut(s)	81, 144, 778
BalI	TGGCCA	1 cut(s)	856
BanII	GRGCYC	2 cut(s)	235, 534
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	518
BccI	CCATC	5 cut(s)	214, 338, 611, 997, 1127
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	2 cut(s)	330, 818
BciVI	GTATCC	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	2 cut(s)	196, 818
BfaI	CTAG	6 cut(s)	44, 275, 647, 729, 872, 893
BfmI	CTRYAG	1 cut(s)	573
BfoI	RGCGCY	1 cut(s)	964
BfuI	GTATCC	1 cut(s)	431
BglI	GCCNNNNNGGC	1 cut(s)	550
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	3 cut(s)	235, 330, 818
Bme18I	GGWCC	2 cut(s)	255, 316
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	255, 316
BmiI	GGNNCC	2 cut(s)	257, 533
BmrFI	CCNGG	3 cut(s)	235, 330, 818
BmsI	GCATC	1 cut(s)	757
BmtI	GCTAGC	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
BpmI	CTGGAG	2 cut(s)	800, 828
BpuMI	CCSGG	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	818
BsaJI	CCNNGG	7 cut(s)	81, 319, 329, 526, 745, 851, 926
Bsc4I	CCNNNNNNNGG	3 cut(s)	252, 265, 564
Bse1I	ACTGG	3 cut(s)	257, 624, 771
Bse3DI	GCAATG	2 cut(s)	866, 913
BseBI	CCWGG	2 cut(s)	330, 818
BseDI	CCNNGG	7 cut(s)	81, 319, 329, 526, 745, 851, 926
BseGI	GGATG	4 cut(s)	206, 361, 772, 958
BseLI	CCNNNNNNNGG	3 cut(s)	252, 265, 564
BseMI	GCAATG	2 cut(s)	866, 913
BseMII	CTCAG	4 cut(s)	114, 207, 231, 981
BseNI	ACTGG	3 cut(s)	257, 624, 771
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	3 cut(s)	81, 144, 778
BseX3I	CGGCCG	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	518
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	5 cut(s)	269, 444, 544, 553, 856
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	235, 445
BslI	CCNNNNNNNGG	3 cut(s)	252, 265, 564
BsmAI	GTCTC	2 cut(s)	196, 818
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	5 cut(s)	269, 444, 544, 553, 856
Bso31I	GGTCTC	1 cut(s)	818
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	5 cut(s)	81, 144, 235, 534, 778
Bsp143I	GATC	4 cut(s)	466, 693, 1009, 1021
Bsp19I	CCATGG	2 cut(s)	319, 926
BspACI	CCGC	3 cut(s)	758, 804, 1106
BspANI	GGCC	5 cut(s)	269, 444, 544, 553, 856
BspCNI	CTCAG	4 cut(s)	115, 206, 232, 980
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	257, 533
BspOI	GCTAGC	1 cut(s)	278
BspPI	GGATC	2 cut(s)	1004, 1029
BspTNI	GGTCTC	1 cut(s)	818
BsrDI	GCAATG	2 cut(s)	866, 913
BsrI	ACTGG	3 cut(s)	257, 624, 771
BssECI	CCNNGG	7 cut(s)	81, 319, 329, 526, 745, 851, 926
BssMI	GATC	4 cut(s)	466, 693, 1009, 1021
BssT1I	CCWWGG	4 cut(s)	319, 526, 851, 926
Bst2UI	CCWGG	2 cut(s)	330, 818
Bst4CI	ACNGT	4 cut(s)	474, 491, 499, 689
Bst6I	CTCTTC	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	5 cut(s)	267, 276, 403, 555, 570
BstDEI	CTNAG	5 cut(s)	11, 123, 193, 240, 967
BstDSI	CCRYGG	3 cut(s)	81, 319, 926
BstF5I	GGATG	4 cut(s)	206, 361, 772, 958
BstH2I	RGCGCY	1 cut(s)	964
BstHHI	GCGC	1 cut(s)	963
BstKTI	GATC	4 cut(s)	469, 696, 1012, 1024
BstMAI	GTCTC	2 cut(s)	196, 818
BstMBI	GATC	4 cut(s)	466, 693, 1009, 1021
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	4 cut(s)	271, 275, 284, 550
BstNI	CCWGG	2 cut(s)	330, 818
BstNSI	RCATGY	3 cut(s)	338, 572, 659
BstSCI	CCNGG	3 cut(s)	233, 328, 816
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	3 cut(s)	81, 144, 778
BstV1I	GCAGC	1 cut(s)	518
BstXI	CCANNNNNNTGG	1 cut(s)	217
BstZI	CGGCCG	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	431
BsuRI	GGCC	5 cut(s)	269, 444, 544, 553, 856
BtgI	CCRYGG	3 cut(s)	81, 319, 926
BtsCI	GGATG	4 cut(s)	206, 361, 772, 958
BtsIMutI	CAGTG	3 cut(s)	694, 778, 975
Cac8I	GCNNGC	5 cut(s)	267, 276, 403, 555, 570
CaiI	CAGNNNCTG	1 cut(s)	512
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	963
Cfr13I	GGNCC	2 cut(s)	255, 316
DdeI	CTNAG	5 cut(s)	11, 123, 193, 240, 967
DpnI	GATC	4 cut(s)	468, 695, 1011, 1023
DpnII	GATC	4 cut(s)	466, 693, 1009, 1021
EaeI	YGGCCR	3 cut(s)	267, 442, 854
EagI	CGGCCG	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EclXI	CGGCCG	1 cut(s)	442
Eco130I	CCWWGG	4 cut(s)	319, 526, 851, 926
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	2 cut(s)	235, 534
Eco31I	GGTCTC	1 cut(s)	818
Eco47I	GGWCC	2 cut(s)	255, 316
Eco47III	AGCGCT	1 cut(s)	962
Eco52I	CGGCCG	1 cut(s)	442
Eco88I	CYCGRG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	328, 816
EcoT14I	CCWWGG	4 cut(s)	319, 526, 851, 926
EcoT38I	GRGCYC	2 cut(s)	235, 534
ErhI	CCWWGG	4 cut(s)	319, 526, 851, 926
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	4 cut(s)	193, 368, 779, 965
FriOI	GRGCYC	2 cut(s)	235, 534
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	6 cut(s)	44, 275, 647, 729, 872, 893
GlaI	GCGC	1 cut(s)	962
GluI	GCNGC	1 cut(s)	507
GsuI	CTGGAG	2 cut(s)	800, 828
HaeII	RGCGCY	1 cut(s)	964
HaeIII	GGCC	5 cut(s)	269, 444, 544, 553, 856
HapII	CCGG	2 cut(s)	235, 445
HhaI	GCGC	1 cut(s)	963
Hin6I	GCGC	1 cut(s)	961
HinP1I	GCGC	1 cut(s)	961
HincII	GTYRAC	2 cut(s)	169, 709
HindII	GTYRAC	2 cut(s)	169, 709
HinfI	GANTC	4 cut(s)	108, 129, 242, 705
HpaII	CCGG	2 cut(s)	235, 445
HphI	GGTGA	3 cut(s)	853, 984, 1079
Hpy166II	GTNNAC	4 cut(s)	142, 169, 246, 709
Hpy188I	TCNGA	5 cut(s)	196, 241, 463, 518, 766
Hpy188III	TCNNGA	4 cut(s)	72, 89, 590, 607
Hpy8I	GTNNAC	4 cut(s)	142, 169, 246, 709
HpyAV	CCTTC	4 cut(s)	47, 346, 820, 1048
HpyCH4III	ACNGT	4 cut(s)	474, 491, 499, 689
HpyCH4IV	ACGT	2 cut(s)	585, 1145
HpyCH4V	TGCA	3 cut(s)	142, 793, 1078
HpyF10VI	GCNNNNNNNGC	4 cut(s)	271, 275, 284, 550
HpyF3I	CTNAG	5 cut(s)	11, 123, 193, 240, 967
HpySE526I	ACGT	2 cut(s)	585, 1145
HspAI	GCGC	1 cut(s)	961
Kzo9I	GATC	4 cut(s)	466, 693, 1009, 1021
LmnI	GCTCC	4 cut(s)	7, 514, 518, 537
Lsp1109I	GCAGC	1 cut(s)	518
LweI	GCATC	1 cut(s)	757
MaeI	CTAG	6 cut(s)	44, 275, 647, 729, 872, 893
MaeII	ACGT	2 cut(s)	585, 1145
MaeIII	GTNAC	2 cut(s)	493, 940
MalI	GATC	4 cut(s)	468, 695, 1011, 1023
MboI	GATC	4 cut(s)	466, 693, 1009, 1021
MboII	GAAGA	3 cut(s)	401, 406, 476
MhlI	GDGCHC	5 cut(s)	81, 144, 235, 534, 778
MlsI	TGGCCA	1 cut(s)	856
MluCI	AATT	6 cut(s)	19, 59, 224, 670, 794, 1027
MluNI	TGGCCA	1 cut(s)	856
MlyI	GAGTC	2 cut(s)	251, 714
MmeI	TCCRAC	3 cut(s)	441, 456, 496
MnlI	CCTC	7 cut(s)	98, 555, 674, 755, 803, 856, 1036
Mox20I	TGGCCA	1 cut(s)	856
MscI	TGGCCA	1 cut(s)	856
MseI	TTAA	3 cut(s)	62, 183, 917
MslI	CAYNNNNRTG	4 cut(s)	137, 156, 215, 765
Msp20I	TGGCCA	1 cut(s)	856
MspA1I	CMGCKG	1 cut(s)	806
MspI	CCGG	2 cut(s)	235, 445
MspR9I	CCNGG	3 cut(s)	235, 330, 818
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	2 cut(s)	330, 818
MwoI	GCNNNNNNNGC	4 cut(s)	271, 275, 284, 550
NciI	CCSGG	1 cut(s)	235
NcoI	CCATGG	2 cut(s)	319, 926
NdeII	GATC	4 cut(s)	466, 693, 1009, 1021
NheI	GCTAGC	1 cut(s)	274
NlaIV	GGNNCC	2 cut(s)	257, 533
NmeAIII	GCCGAG	2 cut(s)	79, 295
NmuCI	GTSAC	2 cut(s)	493, 940
NspI	RCATGY	3 cut(s)	338, 572, 659
PaeI	GCATGC	1 cut(s)	572
PagI	TCATGA	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	553
PciI	ACATGT	1 cut(s)	655
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	2 cut(s)	108, 129
PflMI	CCANNNNNTGG	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	508
PleI	GAGTC	2 cut(s)	250, 713
PpsI	GAGTC	2 cut(s)	250, 713
PscI	ACATGT	1 cut(s)	655
Psp6I	CCWGG	2 cut(s)	328, 816
PspGI	CCWGG	2 cut(s)	328, 816
PspN4I	GGNNCC	2 cut(s)	257, 533
PspPI	GGNCC	2 cut(s)	255, 316
PstNI	CAGNNNCTG	1 cut(s)	512
RseI	CAYNNNNRTG	4 cut(s)	137, 156, 215, 765
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	62, 183, 917
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	4 cut(s)	466, 693, 1009, 1021
Sau96I	GGNCC	2 cut(s)	255, 316
SchI	GAGTC	2 cut(s)	251, 714
ScrFI	CCNGG	3 cut(s)	235, 330, 818
SduI	GDGCHC	5 cut(s)	81, 144, 235, 534, 778
SfaNI	GCATC	1 cut(s)	757
SfcI	CTRYAG	1 cut(s)	573
SfiI	GGCCNNNNNGGCC	1 cut(s)	550
SinI	GGWCC	2 cut(s)	255, 316
SmiMI	CAYNNNNRTG	4 cut(s)	137, 156, 215, 765
SphI	GCATGC	1 cut(s)	572
Sse9I	AATT	6 cut(s)	19, 59, 224, 670, 794, 1027
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	3 cut(s)	758, 804, 1106
SspMI	CTAG	6 cut(s)	44, 275, 647, 729, 872, 893
StuI	AGGCCT	1 cut(s)	553
StyD4I	CCNGG	3 cut(s)	233, 328, 816
StyI	CCWWGG	4 cut(s)	319, 526, 851, 926
TaaI	ACNGT	4 cut(s)	474, 491, 499, 689
TaiI	ACGT	2 cut(s)	588, 1148
TaqI	TCGA	3 cut(s)	111, 168, 798
TaqII	GACCGA	1 cut(s)	737
TasI	AATT	6 cut(s)	19, 59, 224, 670, 794, 1027
TfiI	GAWTC	2 cut(s)	108, 129
Tru1I	TTAA	3 cut(s)	62, 183, 917
Tru9I	TTAA	3 cut(s)	62, 183, 917
TscAI	CASTG	3 cut(s)	694, 778, 975
TseFI	GTSAC	2 cut(s)	493, 940
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	2 cut(s)	493, 940
TspDTI	ATGAA	4 cut(s)	45, 121, 578, 606
TspRI	CASTG	3 cut(s)	694, 778, 975
Van91I	CCANNNNNTGG	1 cut(s)	252
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	255, 316
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	3 cut(s)	338, 572, 659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	6 cut(s)	44, 275, 647, 729, 872, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.