Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013727

Physical Location & Seq

Genomic Coordinates Reverse (-)

61478354 .. 61479861

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015082

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGACCAGTACTGAAAATAATTACTTTCATGAAGCCAGCTACATAGACCAAGCAGGTCAATTACGAACCACAAGAGTGCCTGTAGTTCAAGAACTAGCTCGCCAAGGACTCAAACACCTGCCGGAGAGGTTCGTGGCGCTGCAACCTGAACACGACCAGAACCCGGCTTTACCCAGCCATCATGTCTCGGAACCCCTACCATCCATAAACATGACCAAATTACGAGGCAACGATCGAGCCGAAGAGCTGGCCAAACTACTAACTGGAGCTAAGATATGGGGTATGGTTGTAGTTGAAGGCCACGGTGTAGCCGAGTCTGTTTTGCATGGTGTGAGGGATGTGGTGAAGGAGTTCTTTGGGTTGTCGTTTGACGAGAAGAAGGCAAGCGTTGGGTCGTACGTAAGCGTGGATAACATGGGGTATGGCCGGAACTTTGTCAAGTCGGAAGACCAGCCGTTGGATTGGATTGATCGTGTGACCGTGAAAGCAGCTCCGGCCGGAGCAACCGAAGGGCTTCATGTTTGGCCTCAAAGGCCTGCTAATTTCAGGCATGCTATAGAGCAATATGTTGCAGAAGCAAGAAACATCTTCAATGACATACTTGAAGCCCTTCCTGAAGCCTTATCACTAGAAAGACATGTATTCCTCCAAAACTTTGAACCCCATGAGACTGAGATAAATGTGAGAGTGAACTACTACCCCCCATGCCCAAGGCCAGACCAAGCCCTTGGTCTGTCCCCACACACTGATGCCACTGCCCTCACTCTGCTTCTTCAATTTGAAGCCAGCGGAGGGCTCCAAGTGTTGAAGGACATGGAATGGATCACCGTGCCTTGGCCAAAAGACGCAATGCTAGTGAATGTGGGAGACATACTAGAGATTATGAGCAATGGGATGTTTAGAAGTCCATGGCATAGGGTTGTTACCCAAATGGATGTAGAGAGGTTTTCGGTGGCTTTATTCTATAATCCAAGTCCTCGAACTCAGATTGAGCCGATTGGGAATTGTTCATTGGCAAATGATGATGATGTTGAGGGGTATAAGAAGGTGGTTGTGGGTGACTATTTGCAACATTTTTATAGAATTAGTCCTACTGTGAAGAAACAAGCTATCAGCTTTGCCAAAAGAGTAGCCACATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

382

Amino Acids

42.85

Weight (kDa)

5.63

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	67 - 178	1.8e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	229 - 325	1e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013727)

Species	Orthologous Gene IDs
malus_domestica	MD10G1107900.v1.1
pyrus_communis	pycom10g09320
rosa_chinensis	RchiOBHm_Chr6g0252601
rosa_laevigata	RLG00000015082 RLG00000015086
rosa_multiflora	Rmu_sc0000673.1_g000006 Rmu_sc0002016.1_g000034 Rmu_sc0002016.1_g000042 Rmu_sc0023610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212530 Rroxscaffold_7G00212570
rosa_rugosa	Rorug05G0537200
rosa_samantha	Rh6AG053600 Rh6BG047400 Rh6CG045900 Rh6DG041600
rosa_wichuraiana	Rw6G004810 Rw6G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	129
Acc36I	ACCTGC	2 cut(s)	47, 129
AccB7I	CCANNNNNTGG	1 cut(s)	460
AciI	CCGC	1 cut(s)	792
AclWI	GGATC	1 cut(s)	833
AcoI	YGGCCR	4 cut(s)	252, 427, 498, 839
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	2 cut(s)	13, 401
AfiI	CCNNNNNNNGG	4 cut(s)	166, 460, 795, 837
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	8 cut(s)	92, 299, 595, 608, 662, 779, 785, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	7 cut(s)	42, 101, 250, 272, 494, 1112, 1119
AluI	AGCT	7 cut(s)	42, 101, 250, 272, 494, 1112, 1119
Alw26I	GTCTC	3 cut(s)	193, 665, 864
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	8 cut(s)	252, 301, 427, 498, 527, 536, 716, 839
ApeKI	GCWGC	2 cut(s)	142, 491
Asp700I	GAANNNNTTC	3 cut(s)	353, 516, 612
AspLEI	GCGC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	358, 820, 1073
BalI	TGGCCA	2 cut(s)	254, 841
BanII	GRGCYC	1 cut(s)	801
BbsI	GAAGAC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	129, 503
BccI	CCATC	2 cut(s)	189, 211
BceAI	ACGGC	1 cut(s)	442
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	193, 665, 864
BfaI	CTAG	4 cut(s)	98, 632, 857, 878
BfmI	CTRYAG	2 cut(s)	84, 558
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	2 cut(s)	47, 129
BglI	GCCNNNNNGGC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	143, 492
BlsI	GCNGC	2 cut(s)	144, 493
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	195, 800
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	403
BsaJI	CCNNGG	6 cut(s)	106, 304, 713, 730, 836, 911
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 460, 795, 837
Bse1I	ACTGG	2 cut(s)	9, 271
Bse3DI	GCAATG	2 cut(s)	858, 898
BseDI	CCNNGG	6 cut(s)	106, 304, 713, 730, 836, 911
BseGI	GGATG	4 cut(s)	203, 346, 903, 943
BseLI	CCNNNNNNNGG	4 cut(s)	166, 460, 795, 837
BseMI	GCAATG	2 cut(s)	858, 898
BseMII	CTCAG	2 cut(s)	666, 1001
BseNI	ACTGG	2 cut(s)	9, 271
BseX3I	CGGCCG	1 cut(s)	498
BseXI	GCAGC	2 cut(s)	129, 503
BseYI	CCCAGC	1 cut(s)	176
Bsh1285I	CGRYCG	2 cut(s)	238, 501
BshFI	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
BsiEI	CGRYCG	2 cut(s)	238, 501
BsiSI	CCGG	5 cut(s)	125, 167, 430, 497, 501
BsiWI	CGTACG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	724
BslI	CCNNNNNNNGG	4 cut(s)	166, 460, 795, 837
BsmAI	GTCTC	3 cut(s)	193, 665, 864
BsmFI	GGGAC	1 cut(s)	724
BsnI	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp143I	GATC	3 cut(s)	235, 472, 825
Bsp19I	CCATGG	1 cut(s)	911
BspACI	CCGC	1 cut(s)	792
BspANI	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
BspCNI	CTCAG	2 cut(s)	667, 1000
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	195, 800
BspMI	ACCTGC	2 cut(s)	47, 129
BspPI	GGATC	1 cut(s)	833
BspQI	GCTCTTC	1 cut(s)	240
BsrDI	GCAATG	2 cut(s)	858, 898
BsrI	ACTGG	2 cut(s)	9, 271
BssECI	CCNNGG	6 cut(s)	106, 304, 713, 730, 836, 911
BssMI	GATC	3 cut(s)	235, 472, 825
BssT1I	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
Bst4CI	ACNGT	4 cut(s)	308, 484, 832, 1099
Bst6I	CTCTTC	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	7 cut(s)	40, 103, 252, 388, 540, 555, 790
BstDEI	CTNAG	3 cut(s)	273, 675, 987
BstDSI	CCRYGG	2 cut(s)	304, 911
BstF5I	GGATG	4 cut(s)	203, 346, 903, 943
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	3 cut(s)	238, 475, 828
BstMAI	GTCTC	3 cut(s)	193, 665, 864
BstMBI	GATC	3 cut(s)	235, 472, 825
BstMCI	CGRYCG	2 cut(s)	238, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 535
BstNSI	RCATGY	2 cut(s)	557, 644
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	2 cut(s)	84, 558
BstSNI	TACGTA	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	129, 503
BstV2I	GAAGAC	1 cut(s)	456
BstXI	CCANNNNNNTGG	1 cut(s)	731
BstZI	CGGCCG	1 cut(s)	498
BsuRI	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
BtgI	CCRYGG	2 cut(s)	304, 911
BtsCI	GGATG	4 cut(s)	203, 346, 903, 943
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	2 cut(s)	747, 756
BveI	ACCTGC	2 cut(s)	47, 129
Cac8I	GCNNGC	7 cut(s)	40, 103, 252, 388, 540, 555, 790
CciI	TCATGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	142
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	2 cut(s)	12, 400
CviQI	GTAC	2 cut(s)	12, 400
DdeI	CTNAG	3 cut(s)	273, 675, 987
DpnI	GATC	3 cut(s)	237, 474, 827
DpnII	GATC	3 cut(s)	235, 472, 825
EaeI	YGGCCR	4 cut(s)	252, 427, 498, 839
EagI	CGGCCG	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	498
Eco105I	TACGTA	1 cut(s)	403
Eco130I	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	801
Eco52I	CGGCCG	1 cut(s)	498
Eco57I	CTGAAG	1 cut(s)	639
EcoT14I	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	143, 492
FokI	GGATG	4 cut(s)	190, 353, 910, 950
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	2 cut(s)	143, 492
FspBI	CTAG	4 cut(s)	98, 632, 857, 878
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	2 cut(s)	143, 492
GsaI	CCCAGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	8 cut(s)	254, 303, 429, 500, 529, 538, 718, 841
HapII	CCGG	5 cut(s)	125, 167, 430, 497, 501
HgaI	GACGC	1 cut(s)	857
HhaI	GCGC	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	2 cut(s)	111, 317
HpaII	CCGG	5 cut(s)	125, 167, 430, 497, 501
HphI	GGTGA	3 cut(s)	358, 820, 1073
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	3 cut(s)	193, 448, 990
Hpy188III	TCNNGA	3 cut(s)	32, 92, 617
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	7 cut(s)	293, 343, 376, 506, 623, 805, 1042
HpyCH4III	ACNGT	4 cut(s)	308, 484, 832, 1099
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	4 cut(s)	145, 328, 575, 1072
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 535
HpyF3I	CTNAG	3 cut(s)	273, 675, 987
HpySE526I	ACGT	1 cut(s)	402
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	3 cut(s)	235, 472, 825
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	4 cut(s)	269, 499, 503, 804
Lsp1109I	GCAGC	2 cut(s)	129, 503
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	4 cut(s)	98, 632, 857, 878
MaeII	ACGT	1 cut(s)	402
MaeIII	GTNAC	3 cut(s)	478, 925, 1061
MalI	GATC	3 cut(s)	237, 474, 827
MboI	GATC	3 cut(s)	235, 472, 825
MboII	GAAGA	6 cut(s)	257, 391, 461, 583, 767, 1114
MhlI	GDGCHC	1 cut(s)	801
MlsI	TGGCCA	2 cut(s)	254, 841
MluCI	AATT	7 cut(s)	22, 62, 221, 544, 779, 1006, 1086
MluNI	TGGCCA	2 cut(s)	254, 841
MlyI	GAGTC	2 cut(s)	105, 326
MmeI	TCCRAC	2 cut(s)	426, 441
Mox20I	TGGCCA	2 cut(s)	254, 841
MroXI	GAANNNNTTC	3 cut(s)	353, 516, 612
MscI	TGGCCA	2 cut(s)	254, 841
MslI	CAYNNNNRTG	3 cut(s)	77, 212, 750
Msp20I	TGGCCA	2 cut(s)	254, 841
MspA1I	CMGCKG	1 cut(s)	792
MspI	CCGG	5 cut(s)	125, 167, 430, 497, 501
MspR9I	CCNGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	497, 535
NciI	CCSGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	911
NdeII	GATC	3 cut(s)	235, 472, 825
NlaIV	GGNNCC	2 cut(s)	195, 800
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	478, 1061
NspI	RCATGY	2 cut(s)	557, 644
OliI	CACNNNNGTG	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	538
PciI	ACATGT	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 312
PdmI	GAANNNNTTC	3 cut(s)	353, 516, 612
Pfl23II	CGTACG	1 cut(s)	399
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	2 cut(s)	144, 493
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	2 cut(s)	105, 325
PpsI	GAGTC	2 cut(s)	105, 325
Ppu21I	YACGTR	1 cut(s)	403
PscI	ACATGT	1 cut(s)	640
PspFI	CCCAGC	1 cut(s)	176
PspLI	CGTACG	1 cut(s)	399
PspN4I	GGNNCC	2 cut(s)	195, 800
PvuI	CGATCG	1 cut(s)	238
RsaI	GTAC	2 cut(s)	13, 401
RsaNI	GTAC	2 cut(s)	12, 400
RseI	CAYNNNNRTG	3 cut(s)	77, 212, 750
SapI	GCTCTTC	1 cut(s)	240
SatI	GCNGC	2 cut(s)	143, 492
Sau3AI	GATC	3 cut(s)	235, 472, 825
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	2 cut(s)	105, 326
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	801
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	2 cut(s)	84, 558
SfiI	GGCCNNNNNGGCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	3 cut(s)	77, 212, 750
SnaBI	TACGTA	1 cut(s)	403
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	7 cut(s)	22, 62, 221, 544, 779, 1006, 1086
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	1 cut(s)	792
SspMI	CTAG	4 cut(s)	98, 632, 857, 878
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
TaaI	ACNGT	4 cut(s)	308, 484, 832, 1099
TaiI	ACGT	1 cut(s)	405
TaqI	TCGA	2 cut(s)	238, 982
TasI	AATT	7 cut(s)	22, 62, 221, 544, 779, 1006, 1086
TatI	WGTACW	1 cut(s)	11
TscAI	CASTG	2 cut(s)	754, 763
TseFI	GTSAC	2 cut(s)	478, 1061
TseI	GCWGC	2 cut(s)	142, 491
Tsp45I	GTSAC	2 cut(s)	478, 1061
TspDTI	ATGAA	4 cut(s)	20, 48, 509, 1002
TspRI	CASTG	2 cut(s)	754, 763
Van91I	CCANNNNNTGG	1 cut(s)	460
XceI	RCATGY	2 cut(s)	557, 644
XmnI	GAANNNNTTC	3 cut(s)	353, 516, 612
XspI	CTAG	4 cut(s)	98, 632, 857, 878
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.