Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013727

Physical Location & Seq

Genomic Coordinates Forward (+)

4451735 .. 4454639

Gene Structure 2905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG041600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGACCAGTACTGAAAATAATTACTTTCATGAAGCCAGCTACATAGACCAAGCAGGTCAATTACGAACCACAAGAGTGCCTGTAGTTCAAGAACTAGCTCGCCAAGGACTCAAACACCTGCCGGAGAGGTTCGTGGCGCTGCAACCTGAACACGACCAGAACCCGGCTTTATCCAGCCATCATGTCTCGGAACCCCTACCATCCATAAACATGACCAAATTACGAGGCAACGATCGAGCCGAAGAGCTGGCGAAGCTGCTAACTGGAGCTAAGACATGGGGTATGGTTGTAGTTGAAGACCACGGTGTAGCTGAGTCTGTTTTGCATGGTGTGAGGGATGTTGTAAAGGAGTTCTTTGGGTTGTCGTTTGAAGAGAAGAAGGCAAGCGTTGGGTCGTATGTAAGCGTGGATAACATGGGGTATGGCCGGAACTTTGTCAAGTCGGAAGACCAGCCTTTGGATTGGATTGATCGTGTGACCGTGAAAGCAGCTCCGGCCGGAGCAACCGAAGGGCTTCATGTTTGGCCTCAAAGGCCTGCTAATTTCAGGCATGCTATAGAGCAATATGTTGCAGAAGCAAGAAACATCTTCAATGACATACTTGAAGCCCTTGCTGAAGCCTTATCACTAGAAAGACATGTATTCCTCCAAAACTTTGACCCCCATGAGACTGAGATCAATGTGAGAGTGAACTACTACCCCCCATGCCCAAGGCCAGACCAAGCCCTTGGTCTAACCCCACACACTGATGCCACTGCCCTCACTCTCCTTCTTCAATTTGAAGCCAGTGGAGGGCTCCAAGTGTTGAAGGACATGGAATGGGTCACTGTGCCTTGGCCAAAAGACGCAATGCTAGTGAATGTGGGAGACCTACTAGAGATTATGAGCAATGGGATGTTTAGAAGTCCATGGCATAGGGTTGTTACCCAAATGGATGTAGAGAGGTTTTCGGTGGCTTTATTCTATAATCCAAGTCCTCGAACTCAGATTGAGCCGATTGGGAATTGTTCATTGGTAAATGATGATGATGTTGAGGGGTATAAGAAGATGGTTGTGGGTGACTATTTGCAACATTTTTATAGGATTAGTCCTACTGTGAAGAAACAAGCTATCAGCTTTGCCAAAAGAGTACCCAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

381

Amino Acids

43.0

Weight (kDa)

5.63

Isoelectric Point (pI)

41.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	67 - 178	9.4e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	229 - 325	2.7e-31	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013727)

Species	Orthologous Gene IDs
malus_domestica	MD10G1107900.v1.1
pyrus_communis	pycom10g09320
rosa_chinensis	RchiOBHm_Chr6g0252601
rosa_laevigata	RLG00000015082 RLG00000015086
rosa_multiflora	Rmu_sc0000673.1_g000006 Rmu_sc0002016.1_g000034 Rmu_sc0002016.1_g000042 Rmu_sc0023610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212530 Rroxscaffold_7G00212570
rosa_rugosa	Rorug05G0537200
rosa_samantha	Rh6AG053600 Rh6BG047400 Rh6CG045900 Rh6DG041600
rosa_wichuraiana	Rw6G004810 Rw6G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	129
Acc36I	ACCTGC	2 cut(s)	47, 129
AccB7I	CCANNNNNTGG	1 cut(s)	460
AcoI	YGGCCR	3 cut(s)	427, 498, 839
AcuI	CTGAAG	1 cut(s)	639
AfaI	GTAC	2 cut(s)	13, 1134
AfiI	CCNNNNNNNGG	3 cut(s)	166, 460, 795
AflIII	ACRYGT	1 cut(s)	640
AgsI	TTSAA	8 cut(s)	92, 299, 374, 595, 608, 779, 785, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AleI	CACNNNNGTG	1 cut(s)	77
AluBI	AGCT	9 cut(s)	42, 101, 250, 259, 272, 314, 494, 1112, 1119
AluI	AGCT	9 cut(s)	42, 101, 250, 259, 272, 314, 494, 1112, 1119
Alw26I	GTCTC	3 cut(s)	193, 665, 864
AoxI	GGCC	6 cut(s)	427, 498, 527, 536, 716, 839
ApeKI	GCWGC	3 cut(s)	142, 259, 491
Asp700I	GAANNNNTTC	1 cut(s)	516
AspLEI	GCGC	1 cut(s)	142
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	1 cut(s)	1073
BalI	TGGCCA	1 cut(s)	841
BanII	GRGCYC	1 cut(s)	801
BbsI	GAAGAC	2 cut(s)	306, 456
BbvI	GCAGC	3 cut(s)	129, 246, 503
BccI	CCATC	3 cut(s)	189, 211, 1045
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	193, 665, 864
BfaI	CTAG	4 cut(s)	98, 632, 857, 878
BfmI	CTRYAG	2 cut(s)	84, 558
BfoI	RGCGCY	1 cut(s)	143
BfuAI	ACCTGC	2 cut(s)	47, 129
BglI	GCCNNNNNGGC	1 cut(s)	535
BisI	GCNGC	3 cut(s)	143, 260, 492
BlsI	GCNGC	3 cut(s)	144, 261, 493
BmcAI	AGTACT	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	2 cut(s)	195, 800
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	742
BpiI	GAAGAC	2 cut(s)	306, 456
BpmI	CTGGAG	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	167
BsaI	GGTCTC	1 cut(s)	864
BsaJI	CCNNGG	6 cut(s)	106, 304, 713, 730, 836, 911
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 460, 795
Bse1I	ACTGG	3 cut(s)	9, 271, 789
Bse3DI	GCAATG	2 cut(s)	858, 898
BseDI	CCNNGG	6 cut(s)	106, 304, 713, 730, 836, 911
BseGI	GGATG	4 cut(s)	203, 346, 903, 943
BseLI	CCNNNNNNNGG	3 cut(s)	166, 460, 795
BseMI	GCAATG	2 cut(s)	858, 898
BseMII	CTCAG	3 cut(s)	306, 666, 1001
BseNI	ACTGG	3 cut(s)	9, 271, 789
BseX3I	CGGCCG	1 cut(s)	498
BseXI	GCAGC	3 cut(s)	129, 246, 503
Bsh1285I	CGRYCG	2 cut(s)	238, 501
BshFI	GGCC	6 cut(s)	429, 500, 529, 538, 718, 841
BsiEI	CGRYCG	2 cut(s)	238, 501
BsiSI	CCGG	5 cut(s)	125, 167, 430, 497, 501
BslI	CCNNNNNNNGG	3 cut(s)	166, 460, 795
BsmAI	GTCTC	3 cut(s)	193, 665, 864
BsnI	GGCC	6 cut(s)	429, 500, 529, 538, 718, 841
Bso31I	GGTCTC	1 cut(s)	864
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp143I	GATC	4 cut(s)	235, 472, 678, 1139
Bsp19I	CCATGG	1 cut(s)	911
BspANI	GGCC	6 cut(s)	429, 500, 529, 538, 718, 841
BspCNI	CTCAG	3 cut(s)	307, 667, 1000
BspHI	TCATGA	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	195, 800
BspMI	ACCTGC	2 cut(s)	47, 129
BspQI	GCTCTTC	1 cut(s)	240
BspTNI	GGTCTC	1 cut(s)	864
BsrDI	GCAATG	2 cut(s)	858, 898
BsrI	ACTGG	3 cut(s)	9, 271, 789
BssECI	CCNNGG	6 cut(s)	106, 304, 713, 730, 836, 911
BssMI	GATC	4 cut(s)	235, 472, 678, 1139
BssT1I	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
Bst4CI	ACNGT	4 cut(s)	308, 484, 832, 1099
Bst6I	CTCTTC	2 cut(s)	240, 369
BstC8I	GCNNGC	6 cut(s)	40, 103, 252, 388, 540, 555
BstDEI	CTNAG	4 cut(s)	273, 315, 675, 987
BstDSI	CCRYGG	2 cut(s)	304, 911
BstF5I	GGATG	4 cut(s)	203, 346, 903, 943
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	4 cut(s)	238, 475, 681, 1142
BstMAI	GTCTC	3 cut(s)	193, 665, 864
BstMBI	GATC	4 cut(s)	235, 472, 678, 1139
BstMCI	CGRYCG	2 cut(s)	238, 501
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 497, 535
BstNSI	RCATGY	2 cut(s)	557, 644
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	2 cut(s)	84, 558
BstV1I	GCAGC	3 cut(s)	129, 246, 503
BstV2I	GAAGAC	2 cut(s)	306, 456
BstXI	CCANNNNNNTGG	1 cut(s)	731
BstZI	CGGCCG	1 cut(s)	498
BsuRI	GGCC	6 cut(s)	429, 500, 529, 538, 718, 841
BtgI	CCRYGG	2 cut(s)	304, 911
BtsCI	GGATG	4 cut(s)	203, 346, 903, 943
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	4 cut(s)	747, 756, 796, 828
BveI	ACCTGC	2 cut(s)	47, 129
Cac8I	GCNNGC	6 cut(s)	40, 103, 252, 388, 540, 555
CciI	TCATGA	1 cut(s)	31
CfoI	GCGC	1 cut(s)	142
CseI	GACGC	1 cut(s)	857
Csp6I	GTAC	2 cut(s)	12, 1133
CviQI	GTAC	2 cut(s)	12, 1133
DdeI	CTNAG	4 cut(s)	273, 315, 675, 987
DpnI	GATC	4 cut(s)	237, 474, 680, 1141
DpnII	GATC	4 cut(s)	235, 472, 678, 1139
EaeI	YGGCCR	3 cut(s)	427, 498, 839
EagI	CGGCCG	1 cut(s)	498
Eam1104I	CTCTTC	2 cut(s)	240, 369
EarI	CTCTTC	2 cut(s)	240, 369
EclXI	CGGCCG	1 cut(s)	498
Eco130I	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
Eco147I	AGGCCT	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	801
Eco31I	GGTCTC	1 cut(s)	864
Eco52I	CGGCCG	1 cut(s)	498
Eco57I	CTGAAG	1 cut(s)	639
EcoT14I	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
Fnu4HI	GCNGC	3 cut(s)	143, 260, 492
FokI	GGATG	4 cut(s)	190, 353, 910, 950
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	3 cut(s)	143, 260, 492
FspBI	CTAG	4 cut(s)	98, 632, 857, 878
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	3 cut(s)	143, 260, 492
GsuI	CTGGAG	1 cut(s)	288
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	6 cut(s)	429, 500, 529, 538, 718, 841
HapII	CCGG	5 cut(s)	125, 167, 430, 497, 501
HgaI	GACGC	1 cut(s)	857
HhaI	GCGC	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	2 cut(s)	111, 317
HpaII	CCGG	5 cut(s)	125, 167, 430, 497, 501
HphI	GGTGA	1 cut(s)	1073
Hpy166II	GTNNAC	1 cut(s)	694
Hpy188I	TCNGA	3 cut(s)	193, 448, 990
Hpy188III	TCNNGA	2 cut(s)	32, 92
Hpy8I	GTNNAC	1 cut(s)	694
HpyAV	CCTTC	4 cut(s)	376, 506, 782, 805
HpyCH4III	ACNGT	4 cut(s)	308, 484, 832, 1099
HpyCH4V	TGCA	4 cut(s)	145, 328, 575, 1072
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 497, 535
HpyF3I	CTNAG	4 cut(s)	273, 315, 675, 987
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	4 cut(s)	235, 472, 678, 1139
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	4 cut(s)	269, 499, 503, 804
Lsp1109I	GCAGC	3 cut(s)	129, 246, 503
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	4 cut(s)	98, 632, 857, 878
MaeIII	GTNAC	4 cut(s)	478, 826, 925, 1061
MalI	GATC	4 cut(s)	237, 474, 680, 1141
MboI	GATC	4 cut(s)	235, 472, 678, 1139
MboII	GAAGA	9 cut(s)	257, 311, 386, 391, 461, 583, 767, 1060, 1114
MhlI	GDGCHC	1 cut(s)	801
MlsI	TGGCCA	1 cut(s)	841
MluCI	AATT	6 cut(s)	22, 62, 221, 544, 779, 1006
MluNI	TGGCCA	1 cut(s)	841
MlyI	GAGTC	2 cut(s)	105, 326
MmeI	TCCRAC	1 cut(s)	426
Mox20I	TGGCCA	1 cut(s)	841
MroXI	GAANNNNTTC	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	841
MslI	CAYNNNNRTG	3 cut(s)	77, 212, 750
Msp20I	TGGCCA	1 cut(s)	841
MspI	CCGG	5 cut(s)	125, 167, 430, 497, 501
MspR9I	CCNGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	256, 497, 535
NciI	CCSGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	911
NdeII	GATC	4 cut(s)	235, 472, 678, 1139
NlaIV	GGNNCC	2 cut(s)	195, 800
NmuCI	GTSAC	3 cut(s)	478, 826, 1061
NspI	RCATGY	2 cut(s)	557, 644
OliI	CACNNNNGTG	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	31
PaqCI	CACCTGC	1 cut(s)	129
PceI	AGGCCT	1 cut(s)	538
PciI	ACATGT	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	516
PflMI	CCANNNNNTGG	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	144, 261, 493
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	2 cut(s)	105, 325
PpsI	GAGTC	2 cut(s)	105, 325
PscI	ACATGT	1 cut(s)	640
PspN4I	GGNNCC	2 cut(s)	195, 800
PvuI	CGATCG	1 cut(s)	238
RsaI	GTAC	2 cut(s)	13, 1134
RsaNI	GTAC	2 cut(s)	12, 1133
RseI	CAYNNNNRTG	3 cut(s)	77, 212, 750
SapI	GCTCTTC	1 cut(s)	240
SatI	GCNGC	3 cut(s)	143, 260, 492
Sau3AI	GATC	4 cut(s)	235, 472, 678, 1139
ScaI	AGTACT	1 cut(s)	13
SchI	GAGTC	2 cut(s)	105, 326
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	801
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	2 cut(s)	84, 558
SfiI	GGCCNNNNNGGCC	1 cut(s)	535
SmiMI	CAYNNNNRTG	3 cut(s)	77, 212, 750
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	6 cut(s)	22, 62, 221, 544, 779, 1006
SseBI	AGGCCT	1 cut(s)	538
SspMI	CTAG	4 cut(s)	98, 632, 857, 878
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	5 cut(s)	106, 713, 730, 836, 911
TaaI	ACNGT	4 cut(s)	308, 484, 832, 1099
TaqI	TCGA	2 cut(s)	238, 982
TasI	AATT	6 cut(s)	22, 62, 221, 544, 779, 1006
TatI	WGTACW	1 cut(s)	11
TscAI	CASTG	4 cut(s)	754, 763, 796, 835
TseFI	GTSAC	3 cut(s)	478, 826, 1061
TseI	GCWGC	3 cut(s)	142, 259, 491
Tsp45I	GTSAC	3 cut(s)	478, 826, 1061
TspDTI	ATGAA	4 cut(s)	20, 48, 509, 1002
TspRI	CASTG	4 cut(s)	754, 763, 796, 835
Van91I	CCANNNNNTGG	1 cut(s)	460
XceI	RCATGY	2 cut(s)	557, 644
XmnI	GAANNNNTTC	1 cut(s)	516
XspI	CTAG	4 cut(s)	98, 632, 857, 878
ZrmI	AGTACT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.