Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013727

Physical Location & Seq

Genomic Coordinates Reverse (-)

61529135 .. 61529902

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015086

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTATAATGCTATTTTCAGCCCTTCGGTCTGGCCGAATGCAATAAAGAGAGTGCTCGCATTCTACACAGACCAAGCAGGTCAATTACGAACCTCAAGAGTACCTGTAGTTCAAGAACTAGCTCGACAAGGACTCAAACACCTGCCGGAGAGGTTCGTGGCAGTGCAACCTGAACACGACCAGAACCTGACTTTATCCAGCCATCATGTCTCGGAACCCCTACCATCCATATACATGACCAAATTACGAGGCAAAGATCGAGCCGAAGAGCTGGCCAAGCTACTAACTGGAGCTAAGACATGGGAGAAGAAGGCAAGCGTTGGGTCGTATGTGAGCGTGGATAACATGGGGTATGGCCGGAACTTTGTCAAGTTGGAAGACCAGCCGTTGGATTGGATTGATCGTGTGACCGTGAAAGCAGCTCCGGCCGAAGCAACCGAAGGGCTTCATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

152

Amino Acids

16.97

Weight (kDa)

8.86

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013727)

Species	Orthologous Gene IDs
malus_domestica	MD10G1107900.v1.1
pyrus_communis	pycom10g09320
rosa_chinensis	RchiOBHm_Chr6g0252601
rosa_laevigata	RLG00000015082 RLG00000015086
rosa_multiflora	Rmu_sc0000673.1_g000006 Rmu_sc0002016.1_g000034 Rmu_sc0002016.1_g000042 Rmu_sc0023610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212530 Rroxscaffold_7G00212570
rosa_rugosa	Rorug05G0537200
rosa_samantha	Rh6AG053600 Rh6BG047400 Rh6CG045900 Rh6DG041600
rosa_wichuraiana	Rw6G004810 Rw6G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	150
Acc36I	ACCTGC	2 cut(s)	68, 150
AccB7I	CCANNNNNTGG	1 cut(s)	388
AcoI	YGGCCR	4 cut(s)	32, 273, 355, 426
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	5 cut(s)	122, 271, 280, 293, 422
AluI	AGCT	5 cut(s)	122, 271, 280, 293, 422
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	1 cut(s)	214
AlwNI	CAGNNNCTG	1 cut(s)	187
AoxI	GGCC	4 cut(s)	32, 273, 355, 426
ApeKI	GCWGC	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	2 cut(s)	210, 232
BceAI	ACGGC	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	105
BfuAI	ACCTGC	2 cut(s)	68, 150
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	79
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	292
BseX3I	CGGCCG	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	431
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	4 cut(s)	34, 275, 357, 428
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	146, 358, 425
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmAI	GTCTC	1 cut(s)	214
BsmI	GAATGC	2 cut(s)	43, 59
BsnI	GGCC	4 cut(s)	34, 275, 357, 428
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	256, 400
BspANI	GGCC	4 cut(s)	34, 275, 357, 428
BspLI	GGNNCC	1 cut(s)	216
BspMI	ACCTGC	2 cut(s)	68, 150
BspQI	GCTCTTC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	292
BssMI	GATC	2 cut(s)	256, 400
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	57, 273, 316
BstDEI	CTNAG	1 cut(s)	294
BstF5I	GGATG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	259, 403
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	256, 400
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 425
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	431
BstV2I	GAAGAC	1 cut(s)	384
BstZI	CGGCCG	1 cut(s)	426
BsuRI	GGCC	4 cut(s)	34, 275, 357, 428
BtsCI	GGATG	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	2 cut(s)	68, 150
Cac8I	GCNNGC	3 cut(s)	57, 273, 316
CaiI	CAGNNNCTG	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	4 cut(s)	206, 235, 300, 346
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	2 cut(s)	258, 402
DpnII	GATC	2 cut(s)	256, 400
EaeI	YGGCCR	4 cut(s)	32, 273, 355, 426
EagI	CGGCCG	1 cut(s)	426
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
EclXI	CGGCCG	1 cut(s)	426
Eco52I	CGGCCG	1 cut(s)	426
FaeI	CATG	4 cut(s)	209, 238, 303, 349
FatI	CATG	4 cut(s)	205, 234, 299, 345
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	4 cut(s)	34, 275, 357, 428
HapII	CCGG	3 cut(s)	146, 358, 425
Hin1II	CATG	4 cut(s)	209, 238, 303, 349
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	3 cut(s)	146, 358, 425
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	96, 113
HpyAV	CCTTC	3 cut(s)	33, 304, 434
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4V	TGCA	2 cut(s)	41, 166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 425
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	4 cut(s)	209, 238, 303, 349
Kzo9I	GATC	2 cut(s)	256, 400
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	290, 427
Lsp1109I	GCAGC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	2 cut(s)	258, 402
MboI	GATC	2 cut(s)	256, 400
MboII	GAAGA	3 cut(s)	278, 319, 389
MhlI	GDGCHC	1 cut(s)	57
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	2 cut(s)	83, 242
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	2 cut(s)	354, 369
MnlI	CCTC	3 cut(s)	103, 144, 242
Mox20I	TGGCCA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	233
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	3 cut(s)	146, 358, 425
Mva1269I	GAATGC	2 cut(s)	43, 59
MwoI	GCNNNNNNNGC	2 cut(s)	277, 425
NdeII	GATC	2 cut(s)	256, 400
NlaIII	CATG	4 cut(s)	209, 238, 303, 349
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	406
PaqCI	CACCTGC	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PctI	GAATGC	2 cut(s)	43, 59
PdmI	GAANNNNTTC	1 cut(s)	444
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	216
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
PstNI	CAGNNNCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	233
SapI	GCTCTTC	1 cut(s)	261
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	2 cut(s)	256, 400
SchI	GAGTC	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	2 cut(s)	83, 242
SspMI	CTAG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	412
TaqI	TCGA	2 cut(s)	124, 259
TaqII	GACCGA	1 cut(s)	16
TasI	AATT	2 cut(s)	83, 242
TscAI	CASTG	1 cut(s)	168
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	1 cut(s)	168
Van91I	CCANNNNNTGG	1 cut(s)	388
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.