Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002016.1

Orthogroup ID

OG0013727

Physical Location & Seq

Genomic Coordinates Forward (+)

103135 .. 104780

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002016.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgcatcaaaaattcaaaacaggagagatcgatagagtttcataccttgttcacgagaaagcgaaagaaagattgttgctttggagattccttggtatgcgtcacagactgaggctactggacaacaagggctacacagaccaagcaggtcaattacgaaccacaagagtacctgtagttcaagaactagctcgacaaggactcaaacacctgccggagaggttcgtggcagtgcagcttgaacacgaccagaaccgtactttatccagccatcatgtctcagaaccccttccatccatatacatgaccaaattacgaggcaacgatagagccgaagagctagccaagctactaactggagctaagacatggggtatggttgtagttgaaggccacggcgtagctgattctattttgcatggtgtgagggatgtggtgaaggagttctttagccgaaactttgtcaagttggaagaccagcctttggattggattgatcatgtgaccatgaaagcagctccggccggagcaaccaaagggctacatatttggcctcaaaggcctgctaatttcaggtatgctatagaaaaatacgttgtagaagcaagaaacatcttcaacgacatacttaaagcccttgctgaagccttatcactagaaagacatgtattcctccaaaactttgacctccaccatgcccaaggccagactaagcccttggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

241

Amino Acids

27.76

Weight (kDa)

9.6

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013727)

Species	Orthologous Gene IDs
malus_domestica	MD10G1107900.v1.1
pyrus_communis	pycom10g09320
rosa_chinensis	RchiOBHm_Chr6g0252601
rosa_laevigata	RLG00000015082 RLG00000015086
rosa_multiflora	Rmu_sc0000673.1_g000006 Rmu_sc0002016.1_g000034 Rmu_sc0002016.1_g000042 Rmu_sc0023610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212530 Rroxscaffold_7G00212570
rosa_rugosa	Rorug05G0537200
rosa_samantha	Rh6AG053600 Rh6BG047400 Rh6CG045900 Rh6DG041600
rosa_wichuraiana	Rw6G004810 Rw6G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	219
Acc36I	ACCTGC	2 cut(s)	137, 219
AccB7I	CCANNNNNTGG	1 cut(s)	484
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	663
AfaI	GTAC	2 cut(s)	171, 259
AfiI	CCNNNNNNNGG	1 cut(s)	484
AflIII	ACRYGT	1 cut(s)	664
AgsI	TTSAA	5 cut(s)	16, 182, 242, 389, 619
AluBI	AGCT	7 cut(s)	191, 238, 340, 349, 362, 404, 518
AluI	AGCT	7 cut(s)	191, 238, 340, 349, 362, 404, 518
Alw26I	GTCTC	1 cut(s)	283
AoxI	GGCC	5 cut(s)	391, 522, 551, 560, 703
ApeKI	GCWGC	2 cut(s)	235, 515
ApoI	RAATTY	1 cut(s)	11
Asp700I	GAANNNNTTC	2 cut(s)	288, 443
AsuHPI	GGTGA	1 cut(s)	448
AsuNHI	GCTAGC	1 cut(s)	340
BaeI	ACNNNNGTAYC	2 cut(s)	153, 186
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	247, 527
BccI	CCATC	2 cut(s)	279, 301
BceAI	ACGGC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	3 cut(s)	188, 341, 656
BfmI	CTRYAG	2 cut(s)	174, 582
BfuAI	ACCTGC	2 cut(s)	137, 219
BglI	GCCNNNNNGGC	1 cut(s)	559
BisI	GCNGC	2 cut(s)	236, 516
BlsI	GCNGC	2 cut(s)	237, 517
BmsI	GCATC	1 cut(s)	13
BmtI	GCTAGC	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	378
Bsa29I	ATCGAT	1 cut(s)	30
BsaJI	CCNNGG	4 cut(s)	91, 394, 700, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	484
Bse1I	ACTGG	2 cut(s)	123, 361
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	4 cut(s)	91, 394, 700, 717
BseGI	GGATG	2 cut(s)	293, 436
BseLI	CCNNNNNNNGG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	101, 294
BseNI	ACTGG	2 cut(s)	123, 361
BseX3I	CGGCCG	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	247, 527
BsgI	GTGCAG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	5 cut(s)	393, 524, 553, 562, 705
BshVI	ATCGAT	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	525
BsiSI	CCGG	3 cut(s)	215, 521, 525
BslI	CCNNNNNNNGG	1 cut(s)	484
BsmAI	GTCTC	1 cut(s)	283
BsnI	GGCC	5 cut(s)	393, 524, 553, 562, 705
Bsp143I	GATC	2 cut(s)	27, 496
BspANI	GGCC	5 cut(s)	393, 524, 553, 562, 705
BspCNI	CTCAG	2 cut(s)	102, 293
BspDI	ATCGAT	1 cut(s)	30
BspMI	ACCTGC	2 cut(s)	137, 219
BspOI	GCTAGC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	330
BsrI	ACTGG	2 cut(s)	123, 361
BssECI	CCNNGG	4 cut(s)	91, 394, 700, 717
BssMI	GATC	2 cut(s)	27, 496
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	3 cut(s)	91, 700, 717
Bst2BI	CACGAG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	342, 564
BstDEI	CTNAG	4 cut(s)	110, 280, 363, 711
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	2 cut(s)	293, 436
BstKTI	GATC	2 cut(s)	30, 499
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	2 cut(s)	27, 496
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	3 cut(s)	346, 521, 559
BstNSI	RCATGY	1 cut(s)	668
BstSFI	CTRYAG	2 cut(s)	174, 582
BstV1I	GCAGC	2 cut(s)	247, 527
BstV2I	GAAGAC	1 cut(s)	480
BstZI	CGGCCG	1 cut(s)	522
Bsu15I	ATCGAT	1 cut(s)	30
BsuRI	GGCC	5 cut(s)	393, 524, 553, 562, 705
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	293, 436
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
BveI	ACCTGC	2 cut(s)	137, 219
Cac8I	GCNNGC	2 cut(s)	342, 564
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	170, 258
CviAII	CATG	8 cut(s)	275, 304, 369, 419, 500, 508, 665, 695
CviQI	GTAC	2 cut(s)	170, 258
DdeI	CTNAG	4 cut(s)	110, 280, 363, 711
DpnI	GATC	2 cut(s)	29, 498
DpnII	GATC	2 cut(s)	27, 496
EaeI	YGGCCR	1 cut(s)	522
EagI	CGGCCG	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EclXI	CGGCCG	1 cut(s)	522
Eco130I	CCWWGG	3 cut(s)	91, 700, 717
Eco147I	AGGCCT	1 cut(s)	562
Eco52I	CGGCCG	1 cut(s)	522
Eco57I	CTGAAG	1 cut(s)	663
EcoT14I	CCWWGG	3 cut(s)	91, 700, 717
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	91, 700, 717
FaeI	CATG	8 cut(s)	278, 307, 372, 422, 503, 511, 668, 698
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	8 cut(s)	274, 303, 368, 418, 499, 507, 664, 694
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	236, 516
FokI	GGATG	2 cut(s)	280, 443
Fsp4HI	GCNGC	2 cut(s)	236, 516
FspBI	CTAG	3 cut(s)	188, 341, 656
GluI	GCNGC	2 cut(s)	236, 516
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	5 cut(s)	393, 524, 553, 562, 705
HapII	CCGG	3 cut(s)	215, 521, 525
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	8 cut(s)	278, 307, 372, 422, 503, 511, 668, 698
HinfI	GANTC	3 cut(s)	87, 201, 407
HpaII	CCGG	3 cut(s)	215, 521, 525
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	1 cut(s)	283
Hpy188III	TCNNGA	2 cut(s)	53, 182
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	299, 383, 433
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	594
HpyCH4V	TGCA	3 cut(s)	4, 235, 418
HpyF10VI	GCNNNNNNNGC	3 cut(s)	346, 521, 559
HpyF3I	CTNAG	4 cut(s)	110, 280, 363, 711
HpySE526I	ACGT	1 cut(s)	594
Hsp92II	CATG	8 cut(s)	278, 307, 372, 422, 503, 511, 668, 698
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	27, 496
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	3 cut(s)	359, 523, 527
Lsp1109I	GCAGC	2 cut(s)	247, 527
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	3 cut(s)	188, 341, 656
MaeII	ACGT	1 cut(s)	594
MaeIII	GTNAC	2 cut(s)	101, 502
MalI	GATC	2 cut(s)	29, 498
MboI	GATC	2 cut(s)	27, 496
MboII	GAAGA	3 cut(s)	347, 485, 607
MluCI	AATT	4 cut(s)	11, 152, 311, 568
MlyI	GAGTC	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	7 cut(s)	105, 213, 311, 420, 564, 683, 698
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	288, 443
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	3 cut(s)	215, 521, 525
MwoI	GCNNNNNNNGC	3 cut(s)	346, 521, 559
NdeII	GATC	2 cut(s)	27, 496
NheI	GCTAGC	1 cut(s)	340
NlaIII	CATG	8 cut(s)	278, 307, 372, 422, 503, 511, 668, 698
NmuCI	GTSAC	2 cut(s)	101, 502
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	668
PaqCI	CACCTGC	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	562
PciI	ACATGT	1 cut(s)	664
PciSI	GCTCTTC	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdmI	GAANNNNTTC	2 cut(s)	288, 443
PfeI	GAWTC	2 cut(s)	87, 407
PflMI	CCANNNNNTGG	1 cut(s)	484
PkrI	GCNGC	2 cut(s)	237, 517
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PscI	ACATGT	1 cut(s)	664
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
RsaI	GTAC	2 cut(s)	171, 259
RsaNI	GTAC	2 cut(s)	170, 258
RseI	CAYNNNNRTG	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	2 cut(s)	236, 516
Sau3AI	GATC	2 cut(s)	27, 496
SchI	GAGTC	1 cut(s)	195
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	2 cut(s)	174, 582
SfiI	GGCCNNNNNGGCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	4 cut(s)	11, 152, 311, 568
SseBI	AGGCCT	1 cut(s)	562
SspMI	CTAG	3 cut(s)	188, 341, 656
StuI	AGGCCT	1 cut(s)	562
StyI	CCWWGG	3 cut(s)	91, 700, 717
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	1 cut(s)	597
TaqI	TCGA	2 cut(s)	30, 193
TasI	AATT	4 cut(s)	11, 152, 311, 568
TfiI	GAWTC	2 cut(s)	87, 407
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	2 cut(s)	101, 502
TseI	GCWGC	2 cut(s)	235, 515
Tsp45I	GTSAC	2 cut(s)	101, 502
TspDTI	ATGAA	2 cut(s)	30, 524
TspRI	CASTG	1 cut(s)	237
Van91I	CCANNNNNTGG	1 cut(s)	484
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	1 cut(s)	668
XmnI	GAANNNNTTC	2 cut(s)	288, 443
XspI	CTAG	3 cut(s)	188, 341, 656
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.