Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013727

Physical Location & Seq

Genomic Coordinates Reverse (-)

63016539 .. 63018044

Gene Structure 1506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00212530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACCAAATTACGAGGCAGCGATCGGGCCGAAGAGCTGGCCAAGCTACTAACTGGAGCTAAGACATGGGGTATGGTTGTAGTTGAAGGCCACGGTGTAGCCGAGTCTGTTTTGCATGGTGTGAGGGATGTGGTGAAGGAGTTCTTTGGGTTGTCGTTTGACGAGAAGAAGGCAAGCGTTGGGTCGTATGTAAGCGTGGATAACATGGGGTATGGCCGGAACTTTGTCAAGTCGGAAGACCAGCCATTGGATTGGATTGATCGTGTGACCGTGAAAGCAGCTCCGCCCGGAGCAACCGAAGGGCTTCATGTTTGGCCTCAAAGGCCTGCTAATTTCAGGCCAGACCAAGCCCTTGGTCTAACCCCACACACTGATGCCACTGCCCTCACTCTCCTTCTTCAATTCGAAGCCAGCGGAGGGCTCCAAGTGTTGAAGGACATGGAATGGATCACCGTGCCTTGGCCAAAAGACGCAATGCTAGTGAATGTGGGAGACCTACTAGAGATTATGAGCAATGGGATGTTTAGAAGTCCATGGCATAGGGTTGTTACCCAAATGGATGTAGAGAGGTTTTCGGTGGCTTTATTCTATAATCCAAGTCCTCGAACTCAGATTGAGCCGATTGGGAATTGTTCATTGGCAAATGATGATGATGTTGAGGGATATAAGAAGGTGGTTGTGGGTGACTATTTGCAACATTTTTATAGGATTAGTCCTACTGTGAAGAAACAAGCTATCAGCTTTGCCAAAAGAGTACCCAGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

255

Amino Acids

28.39

Weight (kDa)

6.32

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	4 - 107	1.3e-17	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	110 - 199	2.2e-25	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013727)

Species	Orthologous Gene IDs
malus_domestica	MD10G1107900.v1.1
pyrus_communis	pycom10g09320
rosa_chinensis	RchiOBHm_Chr6g0252601
rosa_laevigata	RLG00000015082 RLG00000015086
rosa_multiflora	Rmu_sc0000673.1_g000006 Rmu_sc0002016.1_g000034 Rmu_sc0002016.1_g000042 Rmu_sc0023610.1_g000001
rosa_roxburghii	Rroxscaffold_7G00212530 Rroxscaffold_7G00212570
rosa_rugosa	Rorug05G0537200
rosa_samantha	Rh6AG053600 Rh6BG047400 Rh6CG045900 Rh6DG041600
rosa_wichuraiana	Rw6G004810 Rw6G004820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	247
AciI	CCGC	2 cut(s)	284, 414
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	3 cut(s)	39, 214, 461
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	3 cut(s)	247, 417, 459
AgsI	TTSAA	3 cut(s)	86, 401, 433
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	6 cut(s)	37, 46, 59, 281, 734, 741
AluI	AGCT	6 cut(s)	37, 46, 59, 281, 734, 741
Alw26I	GTCTC	1 cut(s)	486
AlwI	GGATC	1 cut(s)	455
AoxI	GGCC	8 cut(s)	27, 39, 88, 214, 314, 323, 338, 461
ApeKI	GCWGC	2 cut(s)	18, 278
Asp700I	GAANNNNTTC	2 cut(s)	140, 303
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	3 cut(s)	145, 442, 695
AsuII	TTCGAA	1 cut(s)	405
BalI	TGGCCA	2 cut(s)	41, 463
BanII	GRGCYC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	30, 290
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	2 cut(s)	479, 500
BglI	GCCNNNNNGGC	1 cut(s)	322
BisI	GCNGC	2 cut(s)	19, 279
BlsI	GCNGC	2 cut(s)	20, 280
Bme1390I	CCNGG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	422
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	243
BpmI	CTGGAG	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	4 cut(s)	91, 352, 458, 533
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 417, 459
Bse1I	ACTGG	1 cut(s)	58
Bse3DI	GCAATG	2 cut(s)	480, 520
BseDI	CCNNGG	4 cut(s)	91, 352, 458, 533
BseGI	GGATG	3 cut(s)	133, 525, 565
BseLI	CCNNNNNNNGG	3 cut(s)	247, 417, 459
BseMI	GCAATG	2 cut(s)	480, 520
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	30, 290
Bsh1285I	CGRYCG	1 cut(s)	25
BshFI	GGCC	8 cut(s)	29, 41, 90, 216, 316, 325, 340, 463
BsiEI	CGRYCG	1 cut(s)	25
BsiSI	CCGG	2 cut(s)	217, 288
BslI	CCNNNNNNNGG	3 cut(s)	247, 417, 459
BsmAI	GTCTC	1 cut(s)	486
BsnI	GGCC	8 cut(s)	29, 41, 90, 216, 316, 325, 340, 463
Bso31I	GGTCTC	1 cut(s)	486
Bsp119I	TTCGAA	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	22, 259, 447, 761
Bsp19I	CCATGG	1 cut(s)	533
BspACI	CCGC	2 cut(s)	284, 414
BspANI	GGCC	8 cut(s)	29, 41, 90, 216, 316, 325, 340, 463
BspCNI	CTCAG	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	455
BspQI	GCTCTTC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	2 cut(s)	480, 520
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	4 cut(s)	91, 352, 458, 533
BssMI	GATC	4 cut(s)	22, 259, 447, 761
BssT1I	CCWWGG	3 cut(s)	352, 458, 533
Bst4CI	ACNGT	4 cut(s)	95, 271, 454, 721
Bst6I	CTCTTC	1 cut(s)	27
BstBI	TTCGAA	1 cut(s)	405
BstC8I	GCNNGC	4 cut(s)	39, 175, 327, 412
BstDEI	CTNAG	2 cut(s)	60, 609
BstDSI	CCRYGG	2 cut(s)	91, 533
BstF5I	GGATG	3 cut(s)	133, 525, 565
BstKTI	GATC	4 cut(s)	25, 262, 450, 764
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	4 cut(s)	22, 259, 447, 761
BstMCI	CGRYCG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 322
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	2 cut(s)	30, 290
BstV2I	GAAGAC	1 cut(s)	243
BstXI	CCANNNNNNTGG	2 cut(s)	252, 353
BsuRI	GGCC	8 cut(s)	29, 41, 90, 216, 316, 325, 340, 463
BtgI	CCRYGG	2 cut(s)	91, 533
BtsCI	GGATG	3 cut(s)	133, 525, 565
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	2 cut(s)	369, 378
Cac8I	GCNNGC	4 cut(s)	39, 175, 327, 412
Cfr13I	GGNCC	1 cut(s)	27
CseI	GACGC	1 cut(s)	479
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	6 cut(s)	66, 116, 205, 308, 439, 534
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	2 cut(s)	60, 609
DpnI	GATC	4 cut(s)	24, 261, 449, 763
DpnII	GATC	4 cut(s)	22, 259, 447, 761
EaeI	YGGCCR	3 cut(s)	39, 214, 461
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	3 cut(s)	352, 458, 533
Eco147I	AGGCCT	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	423
Eco31I	GGTCTC	1 cut(s)	486
EcoT14I	CCWWGG	3 cut(s)	352, 458, 533
EcoT38I	GRGCYC	1 cut(s)	423
ErhI	CCWWGG	3 cut(s)	352, 458, 533
FaeI	CATG	6 cut(s)	69, 119, 208, 311, 442, 537
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	6 cut(s)	65, 115, 204, 307, 438, 533
Fnu4HI	GCNGC	2 cut(s)	19, 279
FokI	GGATG	3 cut(s)	140, 532, 572
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	2 cut(s)	19, 279
FspBI	CTAG	2 cut(s)	479, 500
GluI	GCNGC	2 cut(s)	19, 279
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	8 cut(s)	29, 41, 90, 216, 316, 325, 340, 463
HapII	CCGG	2 cut(s)	217, 288
HgaI	GACGC	1 cut(s)	479
Hin1II	CATG	6 cut(s)	69, 119, 208, 311, 442, 537
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	2 cut(s)	217, 288
HphI	GGTGA	3 cut(s)	145, 442, 695
Hpy188I	TCNGA	2 cut(s)	235, 612
HpyAV	CCTTC	7 cut(s)	80, 130, 163, 293, 404, 427, 664
HpyCH4III	ACNGT	4 cut(s)	95, 271, 454, 721
HpyCH4V	TGCA	2 cut(s)	115, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 322
HpyF3I	CTNAG	2 cut(s)	60, 609
Hsp92II	CATG	6 cut(s)	69, 119, 208, 311, 442, 537
Kzo9I	GATC	4 cut(s)	22, 259, 447, 761
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	4 cut(s)	56, 286, 290, 426
LpnPI	CCDG	9 cut(s)	23, 39, 230, 254, 301, 322, 339, 354, 424
Lsp1109I	GCAGC	2 cut(s)	30, 290
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	2 cut(s)	479, 500
MaeIII	GTNAC	3 cut(s)	265, 547, 683
MalI	GATC	4 cut(s)	24, 261, 449, 763
MboI	GATC	4 cut(s)	22, 259, 447, 761
MboII	GAAGA	5 cut(s)	44, 178, 248, 389, 736
MhlI	GDGCHC	1 cut(s)	423
MlsI	TGGCCA	2 cut(s)	41, 463
MluCI	AATT	4 cut(s)	8, 331, 401, 628
MluNI	TGGCCA	2 cut(s)	41, 463
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	8 cut(s)	8, 117, 327, 395, 410, 561, 612, 652
Mox20I	TGGCCA	2 cut(s)	41, 463
MroXI	GAANNNNTTC	2 cut(s)	140, 303
MscI	TGGCCA	2 cut(s)	41, 463
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	2 cut(s)	41, 463
MspA1I	CMGCKG	1 cut(s)	414
MspI	CCGG	2 cut(s)	217, 288
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	2 cut(s)	43, 322
NciI	CCSGG	1 cut(s)	288
NcoI	CCATGG	1 cut(s)	533
NdeII	GATC	4 cut(s)	22, 259, 447, 761
NlaIII	CATG	6 cut(s)	69, 119, 208, 311, 442, 537
NlaIV	GGNNCC	1 cut(s)	422
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	265, 683
NspV	TTCGAA	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PdmI	GAANNNNTTC	2 cut(s)	140, 303
PflMI	CCANNNNNTGG	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	20, 280
Ple19I	CGATCG	1 cut(s)	25
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	422
PspPI	GGNCC	1 cut(s)	27
PvuI	CGATCG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
RseI	CAYNNNNRTG	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	27
SatI	GCNGC	2 cut(s)	19, 279
Sau3AI	GATC	4 cut(s)	22, 259, 447, 761
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	9 cut(s)	39, 48, 61, 283, 498, 572, 675, 736, 743
SfaNI	GCATC	1 cut(s)	364
SfiI	GGCCNNNNNGGCC	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	4 cut(s)	8, 331, 401, 628
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	2 cut(s)	284, 414
SspMI	CTAG	2 cut(s)	479, 500
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	3 cut(s)	352, 458, 533
TaaI	ACNGT	4 cut(s)	95, 271, 454, 721
TaqI	TCGA	2 cut(s)	405, 604
TasI	AATT	4 cut(s)	8, 331, 401, 628
TscAI	CASTG	2 cut(s)	376, 385
TseFI	GTSAC	2 cut(s)	265, 683
TseI	GCWGC	2 cut(s)	18, 278
Tsp45I	GTSAC	2 cut(s)	265, 683
TspDTI	ATGAA	2 cut(s)	296, 624
TspRI	CASTG	2 cut(s)	376, 385
Van91I	CCANNNNNTGG	1 cut(s)	247
XmnI	GAANNNNTTC	2 cut(s)	140, 303
XspI	CTAG	2 cut(s)	479, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.