Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009647

Physical Location & Seq

Genomic Coordinates Reverse (-)

13394266 .. 13396839

Gene Structure 2574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGAGCAAAACATCCCAGTTGCAGAAGATGAGAGAGTTCATCCCTTTTCTTCCTCACCAATGTCAGAGCACTGGAATATTGAAGAAGCGAAGAAGCTCAGTCCTTTCACTTTGAGTCAAAAGTTGGGCTTCCACGAGTTATTTTCTTCGAAGGTTTGGAGAGCATCTCTGGCAGAGCTAGTTGGCTCGGCGGTGCTTGTTTTTGCTATAGACACAATAGTGATCTCCTCCTATGAGACCCAAACCACAATACCAAACCTCATTATGGCAATCCTCATTTCCATCACAGTTGCAATTCTTCTCCTCGTCACCAATCCCATTTCCGGCGGTCACATCAACCCCGTTGTAACGCTATCTGCGTCACTTCTCGGCCTCATCTCCCTCTCACGCGCTGCCGTCTATATCTTGAGCCAATGCGTCGGGGCGGTACTGGGTGCCCTAGCACTCAAGGCCGTGGTAAACAACAACATTGAAGGAACATTTTCACTTGGAGGTTGCACCCTCACTGTCATTGCCCCAGGCCCACACGGGCCTATCATAATGGGCATTGAGACCACCCAAGCCCTTTGGCTTGAGATATTTTGCACGTTTGTGTTTCTCTTTGCTTCGATTTGGATAGCATTCGACCACCGCCAAGCCCATGCTTTGGGCCGAGTTGTAGTCTTCTCTATCATCGGAATAGTTGCGGGCCTCCTTGTTTTTATCTCAACCACCGTTACCGCCGCAAAAGGGTACGCCGGAGTCGGGATGAACCCGGCTAGATGTTTCGGCCCCGCACTTATTCGCGGGGGTCGCCTCTGGAACGGGCATTGGGTATTTTGGGTAGGGCCTGCTATTGCTTGTGTGGCATTTTATTTGTACATTAAGATCATTCCGCGCCATCATTTCCATATGGAGGGCTTCAAGCATGATACTTTGAACATGGTGACGACACTTTCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042221 GO:0044425 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04962 ko04976 map04962 map04976

Pfam Domains

Protein Families

MIP

Protein Analysis

315

Amino Acids

33.96

Weight (kDa)

7.76

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	48 - 281	9.6e-39	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02190 FvH4_2g02190 FvH4_2g02190
malus_domestica	MD10G1116500.v1.1
prunus_persica	Prupe.8G159000_v2.0.a1
pyrus_communis	pycom10g10120
rosa_chinensis	RchiOBHm_Chr6g0245741 RchiOBHm_Chr6g0245821 RchiOBHm_Chr6g0245841 RchiOBHm_Chr6g0245861
rosa_laevigata	RLG00000015294
rosa_multiflora	Rmu_sc0008277.1_g000009
rosa_roxburghii	Rroxscaffold_7G00215130
rosa_rugosa	Rorug05G0515900 Rorug05G0516100
rosa_samantha	Rh6AG030800 Rh6AG031100 Rh6BG027600 Rh6CG027000 Rh6DG026300
rosa_wichuraiana	Rw6G002590 Rw6G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	646
AccII	CGCG	3 cut(s)	390, 786, 877
AfaI	GTAC	3 cut(s)	429, 734, 860
AfiI	CCNNNNNNNGG	6 cut(s)	265, 323, 646, 729, 744, 895
AgsI	TTSAA	4 cut(s)	83, 473, 904, 919
AjnI	CCWGG	1 cut(s)	517
AleI	CACNNNNGTG	2 cut(s)	218, 590
AluBI	AGCT	2 cut(s)	97, 178
AluI	AGCT	2 cut(s)	97, 178
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	2 cut(s)	230, 545
AoxI	GGCC	8 cut(s)	370, 450, 520, 530, 649, 688, 769, 827
ApeKI	GCWGC	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	392, 879
AspS9I	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
AsuC2I	CCSGG	1 cut(s)	755
AsuHPI	GGTGA	3 cut(s)	48, 301, 937
AsuII	TTCGAA	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	655
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	290, 888
BceAI	ACGGC	2 cut(s)	380, 437
BciT130I	CCWGG	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	755
BcoDI	GTCTC	2 cut(s)	230, 545
BfaI	CTAG	3 cut(s)	179, 440, 759
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	393, 723
BlsI	GCNGC	2 cut(s)	394, 724
Bme1390I	CCNGG	2 cut(s)	519, 755
BmgT120I	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
BmiI	GGNNCC	2 cut(s)	436, 772
BmrFI	CCNGG	2 cut(s)	519, 755
BmrI	ACTGGG	2 cut(s)	11, 440
BmsI	GCATC	1 cut(s)	173
BmuI	ACTGGG	2 cut(s)	11, 440
BpiI	GAAGAC	1 cut(s)	655
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
Bpu14I	TTCGAA	1 cut(s)	149
BpuEI	CTTGAG	3 cut(s)	427, 431, 593
BpuMI	CCSGG	1 cut(s)	755
BsaI	GGTCTC	2 cut(s)	230, 545
BsaJI	CCNNGG	2 cut(s)	453, 517
Bsc4I	CCNNNNNNNGG	6 cut(s)	265, 323, 646, 729, 744, 895
Bse1I	ACTGG	3 cut(s)	17, 77, 435
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	2 cut(s)	453, 517
BseGI	GGATG	3 cut(s)	12, 40, 753
BseLI	CCNNNNNNNGG	6 cut(s)	265, 323, 646, 729, 744, 895
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	3 cut(s)	17, 77, 435
BseRI	GAGGAG	2 cut(s)	217, 293
BseSI	GKGCMC	1 cut(s)	439
BseXI	GCAGC	1 cut(s)	379
Bsh1236I	CGCG	3 cut(s)	390, 786, 877
BshFI	GGCC	8 cut(s)	372, 452, 522, 532, 651, 690, 771, 829
BshNI	GGYRCC	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	3 cut(s)	324, 738, 755
BslI	CCNNNNNNNGG	6 cut(s)	265, 323, 646, 729, 744, 895
BsmAI	GTCTC	2 cut(s)	230, 545
BsmI	GAATGC	1 cut(s)	620
BsnI	GGCC	8 cut(s)	372, 452, 522, 532, 651, 690, 771, 829
Bso31I	GGTCTC	2 cut(s)	230, 545
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	72, 439
Bsp1407I	TGTACA	1 cut(s)	858
Bsp143I	GATC	2 cut(s)	222, 867
BspANI	GGCC	8 cut(s)	372, 452, 522, 532, 651, 690, 771, 829
BspCNI	CTCAG	1 cut(s)	111
BspFNI	CGCG	3 cut(s)	390, 786, 877
BspLI	GGNNCC	2 cut(s)	436, 772
BspT104I	TTCGAA	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	230, 545
BsrDI	GCAATG	1 cut(s)	510
BsrGI	TGTACA	1 cut(s)	858
BsrI	ACTGG	3 cut(s)	17, 77, 435
BssECI	CCNNGG	2 cut(s)	453, 517
BssMI	GATC	2 cut(s)	222, 867
BssSI	CACGAG	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	3 cut(s)	289, 508, 715
BstAUI	TGTACA	1 cut(s)	858
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	2 cut(s)	688, 831
BstDEI	CTNAG	2 cut(s)	98, 939
BstDSI	CCRYGG	1 cut(s)	453
BstF5I	GGATG	3 cut(s)	12, 40, 753
BstFNI	CGCG	3 cut(s)	390, 786, 877
BstHHI	GCGC	2 cut(s)	392, 879
BstKTI	GATC	2 cut(s)	225, 870
BstMAI	GTCTC	2 cut(s)	230, 545
BstMBI	GATC	2 cut(s)	222, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 449, 792, 845
BstNI	CCWGG	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	517, 753
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	3 cut(s)	390, 786, 877
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	655
BsuRI	GGCC	8 cut(s)	372, 452, 522, 532, 651, 690, 771, 829
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	3 cut(s)	12, 40, 753
BtsIMutI	CAGTG	2 cut(s)	70, 504
Cac8I	GCNNGC	2 cut(s)	688, 831
CfoI	GCGC	2 cut(s)	392, 879
Cfr13I	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
CseI	GACGC	2 cut(s)	348, 406
Csp6I	GTAC	3 cut(s)	428, 733, 859
CviAII	CATG	3 cut(s)	641, 908, 922
CviQI	GTAC	3 cut(s)	428, 733, 859
DdeI	CTNAG	2 cut(s)	98, 939
DpnI	GATC	2 cut(s)	224, 869
DpnII	GATC	2 cut(s)	222, 867
Eco31I	GGTCTC	2 cut(s)	230, 545
EcoO109I	RGGNCCY	1 cut(s)	827
EcoRII	CCWGG	1 cut(s)	517
FaeI	CATG	3 cut(s)	644, 911, 925
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	3 cut(s)	640, 907, 921
FauI	CCCGC	3 cut(s)	679, 779, 781
FauNDI	CATATG	1 cut(s)	891
Fnu4HI	GCNGC	2 cut(s)	393, 723
FokI	GGATG	2 cut(s)	27, 760
Fsp4HI	GCNGC	2 cut(s)	393, 723
FspBI	CTAG	3 cut(s)	179, 440, 759
GlaI	GCGC	2 cut(s)	391, 878
GluI	GCNGC	2 cut(s)	393, 723
HaeIII	GGCC	8 cut(s)	372, 452, 522, 532, 651, 690, 771, 829
HapII	CCGG	3 cut(s)	324, 738, 755
HgaI	GACGC	2 cut(s)	348, 406
HhaI	GCGC	2 cut(s)	392, 879
Hin1II	CATG	3 cut(s)	644, 911, 925
Hin6I	GCGC	2 cut(s)	390, 877
HinP1I	GCGC	2 cut(s)	390, 877
HinfI	GANTC	2 cut(s)	115, 741
HpaII	CCGG	3 cut(s)	324, 738, 755
HphI	GGTGA	3 cut(s)	48, 301, 937
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	2 cut(s)	67, 677
Hpy188III	TCNNGA	3 cut(s)	406, 745, 799
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	2 cut(s)	145, 467
HpyCH4III	ACNGT	3 cut(s)	289, 508, 715
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	4 cut(s)	23, 293, 498, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 449, 792, 845
HpyF3I	CTNAG	2 cut(s)	98, 939
HpySE526I	ACGT	1 cut(s)	587
Hsp92II	CATG	3 cut(s)	644, 911, 925
HspAI	GCGC	2 cut(s)	390, 877
Kzo9I	GATC	2 cut(s)	222, 867
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	3 cut(s)	179, 440, 759
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	6 cut(s)	307, 329, 346, 360, 715, 925
MalI	GATC	2 cut(s)	224, 869
MboI	GATC	2 cut(s)	222, 867
MboII	GAAGA	7 cut(s)	38, 42, 95, 103, 138, 290, 655
MhlI	GDGCHC	2 cut(s)	72, 439
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	124, 750
MroXI	GAANNNNTTC	1 cut(s)	481
MseI	TTAA	1 cut(s)	864
MslI	CAYNNNNRTG	2 cut(s)	218, 590
MspI	CCGG	3 cut(s)	324, 738, 755
MspR9I	CCNGG	2 cut(s)	519, 755
Mva1269I	GAATGC	1 cut(s)	620
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	3 cut(s)	390, 786, 877
MwoI	GCNNNNNNNGC	4 cut(s)	170, 449, 792, 845
NciI	CCSGG	1 cut(s)	755
NdeI	CATATG	1 cut(s)	891
NdeII	GATC	2 cut(s)	222, 867
NlaIII	CATG	3 cut(s)	644, 911, 925
NlaIV	GGNNCC	2 cut(s)	436, 772
NmeAIII	GCCGAG	3 cut(s)	167, 348, 677
NmuCI	GTSAC	4 cut(s)	307, 329, 360, 925
NspV	TTCGAA	1 cut(s)	149
OliI	CACNNNNGTG	2 cut(s)	218, 590
PcsI	WCGNNNNNNNCGW	1 cut(s)	356
PctI	GAATGC	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	481
PflMI	CCANNNNNTGG	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	394, 724
PleI	GAGTC	2 cut(s)	123, 749
PpsI	GAGTC	2 cut(s)	123, 749
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	2 cut(s)	436, 772
PspPI	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
RsaI	GTAC	3 cut(s)	429, 734, 860
RsaNI	GTAC	3 cut(s)	428, 733, 859
RseI	CAYNNNNRTG	2 cut(s)	218, 590
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	2 cut(s)	393, 723
Sau3AI	GATC	2 cut(s)	222, 867
Sau96I	GGNCC	6 cut(s)	521, 530, 649, 688, 770, 827
SchI	GAGTC	2 cut(s)	124, 750
ScrFI	CCNGG	2 cut(s)	519, 755
SduI	GDGCHC	2 cut(s)	72, 439
SetI	ASST	6 cut(s)	99, 156, 180, 261, 496, 590
SfaNI	GCATC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	207
SfuI	TTCGAA	1 cut(s)	149
SmiMI	CAYNNNNRTG	2 cut(s)	218, 590
SmlI	CTYRAG	3 cut(s)	406, 446, 572
SmoI	CTYRAG	3 cut(s)	406, 446, 572
Sse9I	AATT	1 cut(s)	294
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	3 cut(s)	179, 440, 759
StyD4I	CCNGG	2 cut(s)	517, 753
TaaI	ACNGT	3 cut(s)	289, 508, 715
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	3 cut(s)	149, 608, 624
TasI	AATT	1 cut(s)	294
TatI	WGTACW	1 cut(s)	858
TauI	GCSGC	1 cut(s)	725
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TscAI	CASTG	2 cut(s)	77, 511
TseFI	GTSAC	4 cut(s)	307, 329, 360, 925
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	4 cut(s)	307, 329, 360, 925
TspDTI	ATGAA	2 cut(s)	29, 764
TspRI	CASTG	2 cut(s)	77, 511
Van91I	CCANNNNNTGG	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	481
XspI	CTAG	3 cut(s)	179, 440, 759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.