Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012926

Physical Location & Seq

Genomic Coordinates Reverse (-)

14618580 .. 14620033

Gene Structure 1454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGAAGCCTTAATCAGCTCGGCTTCTCCTACAATCACGTCGTCCGCTTCTTCCTTGTCCGTTTTCTCCCCCCGAAAGTCCCTCCCTTCACGGCCCTTTCAACTCCCGCTCGCCTCCAAAGGAAACGAGAACGAGTCCAATCCGAAATCGGATTCCAAAGAAATCAATCGCCTTCCGATTCTCAGCAATCGCCATCTCTCCCTCTCACCACTCTCCAAGGATGCGGCAATGGGACTGGTAATGGGTGCGGCAACAGGAAGAGGGTGGACTACAGGTTCTGGAATGGAAGGCCCTCCTGCCCCTGCTGGGGTTCAGACAGAGTCAAGCACAGAGAATGTCTCCACTTTTCCCTGGTCTCTCTTTACAAAATCGCCTCGCCGGAGGATGCTTGTGGCTTTTACTTGTAACATTTGTGGGCAGAGGACAACGCGGGCAATTAACCCCCATGCTTACACTGACGGCACCGTCTTTGTGCAGTGTTGTGGATGCAATGCATTTCATAAGCTTGTGGATAATTTGAACCTGTTTCATGAGATGAAGTGCTATGTGAGTCCAGGTTTTAATTACAAAGGTAACGGATGGGAATCTGTTAACTTCAAGTATCTGGAGATGGATGATGATGATGCTAATGATGACATATTTCCCATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006457 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006950 GO:0006986 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016043 GO:0017038 GO:0030150 GO:0031647 GO:0031974 GO:0033036 GO:0033365 GO:0034613 GO:0035966 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0050821 GO:0050896 GO:0051087 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0065008 GO:0070013 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-DNL

Protein Analysis

218

Amino Acids

23.63

Weight (kDa)

6.89

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-DNL	PF05180	131 - 182	7.5e-17	DNL zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0012926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27280
fragaria_vesca	FvH4_2g15740
malus_domestica	MD05G1126400.v1.1 MD10G1129200.v1.1
prunus_persica	Prupe.8G169800_v2.0.a1
pyrus_communis	pycom05g12220 pycom10g11080
rosa_chinensis	RchiOBHm_Chr6g0279051
rosa_laevigata	RLG00000013170
rosa_multiflora	Rmu_sc0002080.1_g000007
rosa_roxburghii	Rroxscaffold_7G00189180
rosa_rugosa	Rorug06G0121700
rosa_samantha	Rh6AG230700 Rh6BG235500 Rh6CG237500
rosa_wichuraiana	Rw0G017040 Rw0G021120 Rw6G020190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	461
AccBSI	CCGCTC	1 cut(s)	109
AccII	CGCG	1 cut(s)	430
AciI	CCGC	5 cut(s)	45, 107, 224, 248, 430
AfiI	CCNNNNNNNGG	2 cut(s)	306, 307
AgsI	TTSAA	3 cut(s)	101, 520, 598
AjiI	CACGTC	1 cut(s)	39
AjnI	CCWGG	2 cut(s)	350, 553
AloI	GAACNNNNNNTCC	2 cut(s)	259, 291
AluBI	AGCT	2 cut(s)	18, 505
AluI	AGCT	2 cut(s)	18, 505
Alw26I	GTCTC	2 cut(s)	343, 360
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	92, 289
AspS9I	GGNCC	2 cut(s)	93, 290
AsuHPI	GGTGA	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	461
BccI	CCATC	4 cut(s)	201, 573, 604, 653
BceAI	ACGGC	2 cut(s)	107, 475
BciT130I	CCWGG	2 cut(s)	352, 555
BcoDI	GTCTC	2 cut(s)	343, 360
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	225, 249
BlsI	GCNGC	2 cut(s)	226, 250
Bme1390I	CCNGG	2 cut(s)	352, 555
BmgBI	CACGTC	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	93, 290
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	2 cut(s)	352, 555
BmsI	GCATC	4 cut(s)	211, 375, 476, 613
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpmI	CTGGAG	1 cut(s)	626
BsaBI	GATNNNNATC	1 cut(s)	583
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	216, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	306, 307
Bse1I	ACTGG	1 cut(s)	240
Bse3DI	GCAATG	2 cut(s)	234, 496
Bse8I	GATNNNNATC	1 cut(s)	583
BseBI	CCWGG	2 cut(s)	352, 555
BseDI	CCNNGG	2 cut(s)	216, 350
BseGI	GGATG	6 cut(s)	226, 390, 491, 584, 619, 645
BseJI	GATNNNNATC	1 cut(s)	583
BseLI	CCNNNNNNNGG	2 cut(s)	306, 307
BseMI	GCAATG	2 cut(s)	234, 496
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	240
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	2 cut(s)	94, 291
BshNI	GGYRCC	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	379
BslFI	GGGAC	2 cut(s)	64, 246
BslI	CCNNNNNNNGG	2 cut(s)	306, 307
BsmAI	GTCTC	2 cut(s)	343, 360
BsmFI	GGGAC	2 cut(s)	64, 246
BsnI	GGCC	2 cut(s)	94, 291
Bso31I	GGTCTC	1 cut(s)	360
BspACI	CCGC	5 cut(s)	45, 107, 224, 248, 430
BspANI	GGCC	2 cut(s)	94, 291
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	360
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	234, 496
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	216, 350
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	352, 555
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	253
BstC8I	GCNNGC	2 cut(s)	111, 432
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	6 cut(s)	226, 390, 491, 584, 619, 645
BstFNI	CGCG	1 cut(s)	430
BstMAI	GTCTC	2 cut(s)	343, 360
BstNI	CCWGG	2 cut(s)	352, 555
BstSCI	CCNGG	2 cut(s)	350, 553
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	430
BsuRI	GGCC	2 cut(s)	94, 291
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	6 cut(s)	226, 390, 491, 584, 619, 645
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	453, 482
Cac8I	GCNNGC	2 cut(s)	111, 432
CaiI	CAGNNNCTG	1 cut(s)	278
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	2 cut(s)	93, 290
CviAII	CATG	2 cut(s)	446, 530
CviJI	RGCY	7 cut(s)	8, 18, 23, 94, 291, 395, 505
CviKI_1	RGCY	7 cut(s)	8, 18, 23, 94, 291, 395, 505
DdeI	CTNAG	1 cut(s)	182
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	350, 553
EcoT14I	CCWWGG	1 cut(s)	216
EcoT22I	ATGCAT	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	449, 533
FaiI	YATR	5 cut(s)	447, 501, 531, 546, 638
FaqI	GGGAC	2 cut(s)	64, 246
FatI	CATG	2 cut(s)	445, 529
FauI	CCCGC	2 cut(s)	114, 423
Fnu4HI	GCNGC	2 cut(s)	225, 249
FokI	GGATG	6 cut(s)	233, 397, 498, 591, 626, 632
Fsp4HI	GCNGC	2 cut(s)	225, 249
GluI	GCNGC	2 cut(s)	225, 249
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	626
HaeIII	GGCC	2 cut(s)	94, 291
HapII	CCGG	1 cut(s)	379
Hin1II	CATG	2 cut(s)	449, 533
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	6 cut(s)	134, 152, 178, 320, 550, 584
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	1 cut(s)	379
HphI	GGTGA	1 cut(s)	198
Hpy166II	GTNNAC	2 cut(s)	267, 592
Hpy188I	TCNGA	4 cut(s)	144, 151, 177, 315
Hpy188III	TCNNGA	3 cut(s)	279, 530, 605
Hpy8I	GTNNAC	2 cut(s)	267, 592
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	96, 182, 281
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	475, 489, 494
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	38
Hsp92II	CATG	2 cut(s)	449, 533
KspAI	GTTAAC	1 cut(s)	592
LweI	GCATC	4 cut(s)	211, 375, 476, 613
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	404, 572
MbiI	CCGCTC	1 cut(s)	109
MboII	GAAGA	2 cut(s)	42, 270
MluCI	AATT	3 cut(s)	435, 514, 562
MlyI	GAGTC	3 cut(s)	143, 329, 559
MnlI	CCTC	8 cut(s)	92, 124, 212, 254, 303, 375, 384, 414
Mph1103I	ATGCAT	1 cut(s)	496
MseI	TTAA	4 cut(s)	11, 438, 561, 591
MspI	CCGG	1 cut(s)	379
MspR9I	CCNGG	2 cut(s)	352, 555
MvaI	CCWGG	2 cut(s)	352, 555
MvnI	CGCG	1 cut(s)	430
NlaIII	CATG	2 cut(s)	449, 533
NlaIV	GGNNCC	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	496
PagI	TCATGA	1 cut(s)	529
PfeI	GAWTC	3 cut(s)	152, 178, 584
PflFI	GACNNNGTC	1 cut(s)	319
PkrI	GCNGC	2 cut(s)	226, 250
PleI	GAGTC	3 cut(s)	142, 328, 558
PpsI	GAGTC	3 cut(s)	142, 328, 558
Psp6I	CCWGG	2 cut(s)	350, 553
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	2 cut(s)	350, 553
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	93, 290
PstNI	CAGNNNCTG	1 cut(s)	278
PsyI	GACNNNGTC	1 cut(s)	319
SaqAI	TTAA	4 cut(s)	11, 438, 561, 591
SatI	GCNGC	2 cut(s)	225, 249
Sau96I	GGNCC	2 cut(s)	93, 290
SchI	GAGTC	3 cut(s)	143, 329, 559
ScrFI	CCNGG	2 cut(s)	352, 555
SetI	ASST	7 cut(s)	20, 41, 277, 507, 525, 559, 574
SfaNI	GCATC	4 cut(s)	211, 375, 476, 613
SfcI	CTRYAG	1 cut(s)	270
Sse9I	AATT	3 cut(s)	435, 514, 562
SsiI	CCGC	5 cut(s)	45, 107, 224, 248, 430
StyD4I	CCNGG	2 cut(s)	350, 553
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	1 cut(s)	41
TasI	AATT	3 cut(s)	435, 514, 562
TauI	GCSGC	2 cut(s)	227, 251
TfiI	GAWTC	3 cut(s)	152, 178, 584
Tru1I	TTAA	4 cut(s)	11, 438, 561, 591
Tru9I	TTAA	4 cut(s)	11, 438, 561, 591
TscAI	CASTG	2 cut(s)	460, 482
TspDTI	ATGAA	3 cut(s)	488, 518, 551
TspGWI	ACGGA	2 cut(s)	49, 591
TspRI	CASTG	2 cut(s)	460, 482
Tth111I	GACNNNGTC	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.