Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004721

Physical Location & Seq

Genomic Coordinates Reverse (-)

14636180 .. 14636527

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g11110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTTAATATTTTTATGTTTATATTCGGGCCCCTTAATGATGGAGAGTACAGGGTTCAAAAATAAGAATGTTGATGCAGACCTTGTATACGTCCTAAAGCTTCCATGGACCTATCCACATGTAGTTCCTTACCCTCATCCTCTGTGGAAACTTAAATGTATATCTGTTCAAGTTGCATGCAAACTTGGTCATATAACAAGTACTGAAACTCAGCTTGATGTCCAGGATTTGGGCCTTCATGATGAATTTGAAGAAGTTATTATTGAAGCTATAATCTCGATGCCTGTGATTGTCATGTGGTCTGGTATCGGTTGGCTTCCACATATATCAAGAAGGCTTGTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000723 GO:0000726 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010212 GO:0010332 GO:0010833 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031323 GO:0031347 GO:0032200 GO:0032204 GO:0032501 GO:0032504 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043247 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051276 GO:0051321 GO:0051716 GO:0055044 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03460 ko04110 ko04115 ko04214 ko04218 ko05165 ko05166 map03460 map04110 map04115 map04214 map04218 map05165 map05166

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase UME

Protein Analysis

116

Amino Acids

13.15

Weight (kDa)

5.65

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40820 AT5G40820 AT5G40820 AT5G40820
fragaria_vesca	FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770
malus_domestica	MD05G1126600.v1.1
prunus_persica	Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1
pyrus_communis	pycom05g12250 pycom10g11100 pycom10g11110
rosa_chinensis	RchiOBHm_Chr6g0279121
rosa_laevigata	RLG00000013166
rosa_multiflora	Rmu_sc0014203.1_g000022
rosa_roxburghii	Rroxscaffold_7G00189110
rosa_rugosa	Rorug06G0122400
rosa_samantha	Rh6AG231100 Rh6BG236000 Rh6CG238100 Rh6DG229700
rosa_wichuraiana	Rw6G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	245
AfaI	GTAC	2 cut(s)	49, 202
AfiI	CCNNNNNNNGG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	118
AgsI	TTSAA	4 cut(s)	58, 170, 251, 266
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	3 cut(s)	100, 214, 269
AluI	AGCT	3 cut(s)	100, 214, 269
AoxI	GGCC	2 cut(s)	28, 232
ApaI	GGGCCC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	245
AspS9I	GGNCC	4 cut(s)	28, 29, 108, 232
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	32
BccI	CCATC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	224
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	4 cut(s)	28, 29, 108, 232
BmiI	GGNNCC	2 cut(s)	30, 31
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	64, 270
BsaJI	CCNNGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	32
BshFI	GGCC	2 cut(s)	30, 234
BslI	CCNNNNNNNGG	1 cut(s)	229
BsnI	GGCC	2 cut(s)	30, 234
Bsp120I	GGGCCC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp19I	CCATGG	1 cut(s)	104
BspANI	GGCC	2 cut(s)	30, 234
BspCNI	CTCAG	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	238
BspLI	GGNNCC	2 cut(s)	30, 31
BssECI	CCNNGG	1 cut(s)	104
BssNAI	GTATAC	1 cut(s)	88
BssT1I	CCWWGG	1 cut(s)	104
Bst1107I	GTATAC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	122, 180
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	32
BstZ17I	GTATAC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	30, 234
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	178
CciI	TCATGA	1 cut(s)	238
Cfr13I	GGNCC	4 cut(s)	28, 29, 108, 232
Csp6I	GTAC	2 cut(s)	48, 201
CviAII	CATG	5 cut(s)	105, 119, 177, 239, 295
CviJI	RGCY	7 cut(s)	30, 100, 214, 234, 269, 316, 337
CviKI_1	RGCY	7 cut(s)	30, 100, 214, 234, 269, 316, 337
CviQI	GTAC	2 cut(s)	48, 201
DdeI	CTNAG	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	5 cut(s)	108, 122, 180, 242, 298
FatI	CATG	5 cut(s)	104, 118, 176, 238, 294
FblI	GTMKAC	1 cut(s)	87
FokI	GGATG	1 cut(s)	123
FriOI	GRGCYC	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	30, 234
Hin1II	CATG	5 cut(s)	108, 122, 180, 242, 298
HindIII	AAGCTT	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	3 cut(s)	239, 277, 330
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	2 cut(s)	245, 327
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	77, 176, 180
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	108, 122, 180, 242, 298
LpnPI	CCDG	5 cut(s)	36, 209, 236, 288, 297
LweI	GCATC	2 cut(s)	64, 270
MaeII	ACGT	1 cut(s)	90
MboII	GAAGA	1 cut(s)	263
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	245
MnlI	CCTC	2 cut(s)	144, 150
MseI	TTAA	3 cut(s)	5, 35, 153
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NcoI	CCATGG	1 cut(s)	104
NlaIII	CATG	5 cut(s)	108, 122, 180, 242, 298
NlaIV	GGNNCC	2 cut(s)	30, 31
NspI	RCATGY	2 cut(s)	122, 180
PaeI	GCATGC	1 cut(s)	180
PagI	TCATGA	1 cut(s)	238
PciI	ACATGT	1 cut(s)	118
PflMI	CCANNNNNTGG	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	222
PscI	ACATGT	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	30, 31
PspOMI	GGGCCC	1 cut(s)	28
PspPI	GGNCC	4 cut(s)	28, 29, 108, 232
RsaI	GTAC	2 cut(s)	49, 202
RsaNI	GTAC	2 cut(s)	48, 201
SaqAI	TTAA	3 cut(s)	5, 35, 153
Sau96I	GGNCC	4 cut(s)	28, 29, 108, 232
ScaI	AGTACT	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	6 cut(s)	84, 93, 102, 113, 216, 271
SfaNI	GCATC	2 cut(s)	64, 270
SinI	GGWCC	1 cut(s)	108
SphI	GCATGC	1 cut(s)	180
Sse9I	AATT	1 cut(s)	245
SspI	AATATT	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	104
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	278
TasI	AATT	1 cut(s)	245
TatI	WGTACW	2 cut(s)	47, 200
Tru1I	TTAA	3 cut(s)	5, 35, 153
Tru9I	TTAA	3 cut(s)	5, 35, 153
TspDTI	ATGAA	2 cut(s)	227, 258
Van91I	CCANNNNNTGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	108
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	2 cut(s)	122, 180
XmiI	GTMKAC	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.