Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004721

Physical Location & Seq

Genomic Coordinates Forward (+)

26937344 .. 26950827

Gene Structure 13484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 8319 bp

ATGGCCAACCTGAGTAGCCTCATCCACGAGCTCCGAGAACCCATAGCAGCCGCCTCATCCACTTCTCCTAACAACTCACACGACGTCGCTTTGGAGATCCGATTCCGCGCCGTCCTTCCCAACCTTCTTCAAGCTCACGTCGTCCCCTCTCCCTCCGCGAATGAGAGAGAAGTGATAGCTATACTGAGGCTCATCGGTTACACGGCGAAGCATTTTCCCGGAGTCCTTTACCATGGCAAGGCTGCCGCGATTCTTCCTATGATCGGTCGTATTCTGCCTTTCTTTGCAGAGCCCGCGTTCCGTTCTAGGCATGGAGTGATATTTGATACGCTTGGATCGCTTTTAACCTTACTTCGTAGTGGCGCTCAGGATGCATATCGTCAGTTTTTTGTGGATTCCATGCTCGTTATTCAAGATCTTTTGTGTGTCGCATCAGTCTCTGCAGACGTATCAAGTTTTACCGAATCAACTAGAGTGACTTTAAAGTGTTTCTGCGAGTCCTTCAATGCAATTTTTGATGATCCTTCACATCTTGGTGATCTCCCACATAGTATCAAACCTGTTGATGGCACTGGGATCTTGATTAACCTTACAGCAAAAGCAAGGTGGCAACCTTTCGCAACTTGGATGATTAAGCTTCTTGGAAAATGCTTAACTGAAGGAACTTTATATGTGGATGGACTTATCAATATGCCATTTGTTATGGCTGCATGGTCCCTTTTTTGTTATGGGGATGCTGATTTGCACATGGCATTTTTTGAATTTGCATGCATCGTTGGATCTGCGATAAAATGTGACGTCATTCCTTATCATAACATAATCCAGTCGATATCATCTATATTAAGCGAGGACAAAGAGGGGACTCCTGCATTTAGAAACACGGTTTATGATTCGTCCATGGGTGGTTGCCTAGAGGCATTGCACTCTAATTGCCCTGAGGGTATAGTCAAGCTAACAGCTGCACATTTTGTCAATGTATTTCCTCATTCAATGAGGAGAACCCGAAGCCAGGAGCTTAAGGTTGCATTGTGCAACACATACATACGGATTGCGAAGATTTGCCCCCCTCATATCTGGAGGCCGGAAATTCTCTTATATGTACTTTCATGTCCGGATCCCTGCTTTTCATTGATAGATTGCTTACATGTAGCTCTCTCTATACTTGGTCCTGATCTTGTTGGAGGAAGAATTACAGATAATTCCTGCCAGAGTTTATCCATATTAAGTGATAAATCAATTGAAAACTCACAGGTTGGAGAAAAAAGACCTATTGAGGATGTGGATTCTTTCAACACTAAACGCCAGAAGGTTGATGAAAAAATCATCAATCCTGATTCTAATGTTCAGTTGGAATGGCAGTGTGCTCACATAGTTCCTTGTGAGACAGAAGACTATGCAAATCAGATGCATAAATCACTCCTTTCTTTTGCTGAATGTTTAAAATCTCCTGGCATCTGTCCTAATTCCTTAAGACCTGATCTCGCGTTAATGGCTCTTAGCATTCTTTGCATTGCGTTCTGTAGGTATCCTGAGACCAATCTGTCATTATGCATCTTTCATCAGATGTATACATGGATACCTTGGATATGCCAACAGGCAAAGCAAGGAAGTACAGTTGAACTTGATATTTCCATCTACCTGGAAGGAATTCACTGTATGTTGCGGTTGCAAAATTGCTTAATCATGAAGTGTATGGACAGTACGCTTGTCGATGCTGATCTTATACATGTCCTTCTAAAGCTTCCATGGACCCATTCTCATGTAGTTACTGACCACCATCAATTGTGGAAAACAAAATGCATCTCAGTTCAAGTTGCATGCAAACTTGGTCATAGCACAATAATTGAAAATCAACTTGAAGTATTGGATTTGAGTCTCAATGATGAATGTGACGAAGTTATAATTGAAGCTATAACTTCTATGCCCGTGATTGTCATGTGGTCTGGCCTCAGTGGACTTTCTCACATATTCAGAAGGCTTGAGCTCTTGGGGCGACAGAGAAGTGAGAAGGTTAAGAATATCATTCCCTTTTCTCTTGGTTTTTTGTCATGTCTTTACGGATCTCATAGCAATGGAGATGACATAAATAGAAGTCAGTGTAAACTATTTCTAAAAATGAAAAGTGAGAGATACAGTCAAACAGTGGATTATTTACTGCAAGGATTCTGGTGTTCAAAGTGTGACCGAAGTGTTCAACACAATACTGAGTCATATTCAAATATCATAAATCTACCTGACAGGCCCAGAGAATTGGACTGTAATTTTCTCCATCTTCAGTCTATATATTTTCAGCTTCTTAATGATGAGTCATCTGAAGAGATTCAAGTGGCTTGTGTGAAAAATATCCGCCGAGTACTTGTACATGGGGGCATAGAGAATCTGTTGGAGTCAAGATTTGAATGGATTAAATGTGTTAAATATCTACTCATTAATACCAAGAAGGCTATAAGAGAAGCATTCTGCACTCAGATTAGTTCATTCGTTGAGGATTCAATTTTGAGTTGCTTATTTCCTGATGAGGGCATGTCAAGTAATGGTAGAGAAGAAGGGTTTTTGAACATAATCAACAGCTCATTTTCAGAAACTAAAGACCTCCAAATCATTGAGACTCTTTTGGAATCAACAGCTGAAATAATGATTGCAGTTGATATTCAGAGTCAATTATTCTTGTTTTCTCTTCTTTTGTTGGTTGGTCAACTTGATAATCCACACACGACAGTGAGAATGATTGCAGCGAAGTTGATACACAAAGCTTGCTGTTTTCATCTTAAAGGAGGTTTCCAAGTAATCCTTCTGAAAGTTGTTCATGTTCGAAATGAGCTATTTGACTATCTGTCTTCGAGGCTCTCTAGCCGTCCGACTATGGTCCAAGAGTTTGCAGAATCAGTTCTTGGTATTGAAATAGAAGAACTTGTCAAGAAAATGGTTCCCGTAGTTCTTCCGAAGCTTGTAGTGTCTCAGCAGGATGATGATCAAGCAGTTGACACCTTATATGAACTGGCCAAGTGGTTAAACACTGATGTTGCAGATCTTATAGTTCTATGGGTGCCAAAAGTGCTAGCTTTTGCTCTCCATCAACCAGATGTGCGAGAATTAGATGCTGCTGTACAGTTTTACCATACACAAATCAGTTCTAACAAAAGAGAAATCTTTGCTGCTGCATTAAATAATCTTTTAGATGAACTCATATGCTTTCTGGATGGGGGTGATTCAGATGAGATAAGCGGAAGGTTAGCAAGAGTACCTGAGACGATAAAAGAGGTTGCTAGAGTTTTGGATGAAGGTGAAGATCTACCAAACTTTTTGAGGAATCATTTTGCCCACCTTCTTAACAGTATCGATAGAAAGATGCTCCATGCAGAAGAATTTTCATTGCAGAAACAAGCCTTGCAACGAATTGAGATGCTAATTAAAATGATGGGTCGTCATCTTAGTACTTATGTGCCTAAACTAATGGTTCTTCTCATGCATGCTATTGATAAGGACATCCTCCAGAGTGAGGGTCTCTCAGTGTTGCATTTTTTCATTGTGCAGCTGGTGAAAGTATCACCGGCTAGCACTAAACATGTAATTTCACAAGTTTTTGCTGCCCTTATTCCCTTCCTTGAGAGAGATGAAGAAAGTCCAGTACATCTGGATAAAGTGGTAAAAATTTTAGAAGAACTTGTGCTAAATAACAGGGATATTCTAAAGCAGCATATTCGTGAGTTCCCTCCATTGCCCAGTATTCCAGCCTTAATAAAAGTGAACAAGGCTATACAAGAAGCCAGAGGGTCAATGACTTTGAGGGATCGATTGCGGGATGTTGTTGATGGTCTGAATCATGACAGCTTAAATGTGAGGTACATGGTTGTGTGTGAGTTGAAAAAGTTGCTGAACCTGGAACAGGAAGGGGTTACATCTCTAATAACTGCTGAAGGTGGTGCGGATATGGAAATTTTGAGCTCTTTAATCAGATCTCTACTTAAAGGATGTGCTGAAGAATCAAGGAGAGCAGTTGGACAGCGGCTAAAGTTGGTGTGTGCTGACTGCCTTGGGGCCCTGGGTGCAGTTGACCCTGCTAAAGTGAAGGCCTTTTCATGCCAACGCTTTAAAATTGAATGCTCTGATGATGACCTTATCTATGAGTTGATTCAGAAGCAACTTGCACGGGCCTTTAGAGCTGCACCTGACACTATAATTCAAGATTCAGCTGTAGTGGCCATACAGGAACTGCTAAAGATTGCAGGTTGTGAGGCCTCATTACATGAGAATGCTGCTGCTTCTATGTCGGCTCCAAAGGACAAAGAGCCTCTGATGGGTTCTGCTTCTGGAATGATGACCACTGATGGTACAAATGAGATGACTAGAAGGGGTCAGAGATTATGGGACCGGTTCTCCAATTATGTGAAAGAAATAATCGCCCCATATTTGTCCTCTAGATTTCAACTTCCTAATGTTGCTGATCCTGTATTTGTTGGCCCAATTTACCGTCCATCTATGTCATTCAGAAGATGGATATTCTTCTGGATAAGAAAGCTGACTGCACATGCTACTGGTTCTCGTGCAAGAATTTTCAATGCTTGTCGAGGTATAGTGCGCCAGGATATGCAAACAGCAATTTATCTGCTTCCATATTTAGTTCTTAATGCTGTCTGTCATGGCACAGAGGAGGCACGCTATGGCATAACAGAAGAAATCCTATATGTTCTTGATGTTGCTGCATCTCATAACAGTGAGGATGCAGTGCATGGTGTCAATGGTCGGAAAAATGAAGTTTGTGTTCAAGCTGTGTTCATTCTCCTTGATAATCTTGGTCAATGGGTGGATGATGTTAGACAAGAACTATTCTGTTCTTTTCAATTAGTAGCTTCTAAGCAACAAATATCCAAGACCAGGCATCAAACTCAGAATACTACCAATCAGGACCAACTTCGTCTACAGTGTGAACATGTTTCAAAACTCTTGTCTGCAGTTCCAAAGGAGACCCTTGCCAGGGCCTCCTTCAGGTGTCAGGCTTATGCAAGATCCTTCATGTATTTTGAGTTGTACGTGAGGGGAAAGTCAGGTTCTTTCAACCCTGCATCTGAGCGAAGTGGTTCATTTGATGATGCAGATGTTTCATATCTGATGGAAATATACAGCTGCCTGGATGAGCCTGATGGTCTTTCTGGATTTGCATTTTTACGTAAATCTTTGGAATTACAAGACCAGCTTTTGATAAACAAAAAAGCCGGGAACTGGGCAGAGGTTTTAACTTCTTGTGAACAAGCTTTGCAGATGGAACCAACATCAGTTCAAAAGCAGTCTGATGTGCTTAACTGTTTATTAAACATGTGTCACCTTCAGGCTATGGTGACTCATGTGGATGGTTTAATGTGTAGGATTCCCCAATACAAGAAAACATGGTGCATGCAAGGTGTGCAGGCAGCATGGAGACTTGGCAGGTGGGATTTGATGGATGAGTACCTTAGTGGAGCTGATCAAGAAGGTTTACTTTGTAGCAGTTCTGAAAGTAATGCGTCATTTGATATGGATGTTGCAAAAATTCTGCAGGCAATGATGAAGAAGGATCAGTTCTCAGTTGAAGAAAAAATTGCCCTCTCCAAGCAAGCTCTAATTGCTCCCCTTTCTGCTGCAGGCATGGATTCTTATGTGCGGGCTTACCCATTTGTCGTGAAACTTCACCTGCTACGAGAGCTTGAGGATTTTTATACTCTTCTTGGTGATGCTTCTTTCTTGGAGAAATCGTTTGCATTTGATGATCCTAAATTCTCAAAAGTGAGGGAGAACTGGGAAAACCGTCTCAGATTTACTCAGCCATCACTCTGGGCAAGAGAGCCACTTTTGGCTTTCCGAAGATTGGTTTTTGCTAACAGTGGTCTTGAGGCTCAAGTTGGGAACTGCTGGCTTCAATATGCAAAGCTCTGTCGCATGGCTGGTCATTATGAGACAGCAAATCAGGCTATTCTAGAAGCCCAAGCTACCAATGCACCTAACGTTCACATGGAGAAGGCTAAACTTCTCTGGAGCACCAGGCGATCTGATGGTGCAATTGCACAGTTGCAACAGTGTCTCTTGAACATGCCTGAAGGGATTGTAGGCTCCAATGCAATTGCATCAATTACCAGTCTTTCACTGGTTCCGCCAAACCTGCCCCCTTTAGTTAATAATACTCAAGCTTGGAATGAAAATCGAGATATTGCAAAGACACTTCTCCTCTATTCTAGGTGGATCCATTACACCGGGCAGAAGCAGAAAGAAGATGTCATAAGTCTATATAGCAGGGTGAGGGAACTGCAGCCCAAGTGGGAGAAAGGATATTTTTACATGGCTAAATATTATGAGGAAGTGCTAGCTGATGCCAGGAAGCGTCAGGAAGAAAATCTTGAACTGGGTCCTAGGAAATTACCATCAAATAGTTCTATTGTTGGTTCTTCAAATTTAAATACGGAGAAGGCTTGGTGGGCATATGTGCCTGACATATTGATATTCTATGCAAAAGGGCTTCATCGGGGCCACAAGAATCTCTTTCAGGCACTTCCAAGGTTGTTAACCCTGTGGTTTGACTTTGGGACTATGTATGAAAGGAGTGGCACATCATCCAATAAGGATCTCAAAAATGTCCACATGATGGTGATGAGATGCATGCGAGGGTGTTTGAAGGACTTGCCAACATATCAGTGGCTAACAGTACTGCCACAGTTGGTTTCAAGAATCTGCCACCAGAATGAGGAAGTAGTTCGATTGGTCAAAAGCATCATCACATCAGTTCTCCGGCAATACCCACAACAAGCCCTGTGGATTATGGCAGCGGTTTCAAAATCCACTGTTCCATCCAGGAGGGATGCAGCTGCTGAAATTCTACAGGAGGCACGGAAAGGGTTCAGCCAAGGAACTGGTGGAAGCAATCTGTTTGTTCAGTTTGCCAGTCTGATTGATCATTTTATCAAGTTGTGCTTCCATGCTTGTCAGACAAAGGCGAAAACAATCAATGTCTCTACTGAATTTAGTCTCTTAAAGAGGATGATGCCGCTGGGAATTATCATGCCAATTCAGCAATCTCTAACTGTTAGCCTACCGACATACGACGGGAACCTCACTGACTCACTTAAGTCTGATATCTTTTCTGCGACTGATCTTCCTACAATATCAGGAATACGTGATGAGGCTGAGATTCTTTCTTCCCTTCAGCGACCTAAGAAAATTGTTCTATTGGGCAGCGATGGCATTGAACGTCCGTTCCTCTGCAAACCCAAGGATGACCTCAGGAAAGATGCCCGGATGATGGAGTTCACAGCAATGATAAACCGTTTGTTGTCTAAATACCCAGCAAGCCGTCGGAGGAAGCTCTACATTCGCACCTTTGCAGTAATTCCTTTGACAGAGGATTGTGGTATGATAGAATGGGTGCCCCACACACGTGGACTTCGGCATATACTTCAAGACATATATATGAACTGTGGAAACTTTGGTATTGATACAAATTCAAAGATCAAGCGCTTATATGATCAATGCAAGGGTAAAATACCAGAAGATGAGATGTTGAAGGACAAAATTCTTCCAATGTTCCCTCCAGTTTTCCACAAGTGGTTCCTGACCACTTTTTCTGAGCCAGCTGCTTGGTTTAGGGCACGGATTGCTTATGCACACACTACTGCAGTTTGGTCCATGGTTGGACATATTGTGGGGCTTGGTGACCGACATGGGGAAAACATTCTTTTTGATTCTACAACAGGTGATTGTGTTCATGTTGATTTCAGTTGCTTATTCGATAAAGGCTTGCAGTTGGAGAAGCCTGAACTGGTGCCTTTCAGATTGACTCAGAATATGATTGATGGCTTGGGCATCACTGGTTATGAGGGAATCTTTTTGAGGATCTGCGAAATCACACTTTCAGTACTGAGGATGCATCGGGAGACATTGATGAGTGTTCTTGAGACTTTTGTCCATGATCCTCTTGTAGAATGGTCAAAATCACACAAATCTAGTAGAGTAGAAGTTCAGAATCCACACGCACAGCTAGCCATCAGTAACATTGAGGCAAGATTGCAAGGAGTAGTTGTCGGTGTCGGAGCAGCACCATCTTTGCCTTTGGCTGTAGAAGGTCAGGCTCGTCGATTAATAGCTGAAGCAGTCTCCCACAAAAATCTCGGAAAGATGTCAGGTACTAGGGGCATCAAGTATTTCCTGAAACAGCCTCACAAAAAACCCAGCAACAATTCTGTTATGGTGTTTGGCTTCAAGGATTTTTCAGAAGTCAGTCTTGTACTGAATTTGGTTCAGGCTACTGGCTGGATCCAAATGGCAAGGATTAACTCAAGAAATCCCAGACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000723 GO:0000726 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006282 GO:0006302 GO:0006303 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010212 GO:0010332 GO:0010833 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031323 GO:0031347 GO:0032200 GO:0032204 GO:0032501 GO:0032504 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043247 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051276 GO:0051321 GO:0051716 GO:0055044 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071897 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:1901360 GO:1901362 GO:1901576 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03460 ko04110 ko04115 ko04214 ko04218 ko05165 ko05166 map03460 map04110 map04115 map04214 map04218 map05165 map05166

Pfam Domains

Protein Families

FAT FATC PI3_PI4_kinase UME

Protein Analysis

2773

Amino Acids

312.63

Weight (kDa)

6.73

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UME	PF08064	1101 - 1201	2.9e-16	UME (NUC010) domain
M-HEAT_ATR	PF25030	1488 - 1733	1.2e-32	Serine/threonine-protein kinase ATR, M-HEAT region
FAT	PF02259	1800 - 2179	3.7e-59	FAT domain
HEAT_ATR	PF23593	2206 - 2305	6.5e-32	Serine/threonine-protein kinase ATR-like, HEAT repeats
PI3_PI4_kinase	PF00454	2407 - 2651	3.3e-56	Phosphatidylinositol 3- and 4-kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004721)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40820 AT5G40820 AT5G40820 AT5G40820
fragaria_vesca	FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770 FvH4_2g15770
malus_domestica	MD05G1126600.v1.1
prunus_persica	Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1 Prupe.8G170300_v2.0.a1
pyrus_communis	pycom05g12250 pycom10g11100 pycom10g11110
rosa_chinensis	RchiOBHm_Chr6g0279121
rosa_laevigata	RLG00000013166
rosa_multiflora	Rmu_sc0014203.1_g000022
rosa_roxburghii	Rroxscaffold_7G00189110
rosa_rugosa	Rorug06G0122400
rosa_samantha	Rh6AG231100 Rh6BG236000 Rh6CG238100 Rh6DG229700
rosa_wichuraiana	Rw6G020240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1901
AarI	CACCTGC	2 cut(s)	5415, 5676
AasI	GACNNNNNNGTC	1 cut(s)	1540
AatII	GACGTC	2 cut(s)	87, 801
Acc36I	ACCTGC	4 cut(s)	4217, 5415, 5676, 6141
AccB1I	GGYRCC	3 cut(s)	3046, 7390, 7786
AccB7I	CCANNNNNTGG	1 cut(s)	6613
AccI	GTMKAC	2 cut(s)	1568, 4918
AccII	CGCG	5 cut(s)	108, 158, 248, 296, 1484
AccIII	TCCGGA	1 cut(s)	1111
AclI	AACGTT	1 cut(s)	5979
AcoI	YGGCCR	3 cut(s)	3, 3000, 4200
AcvI	CACGTG	1 cut(s)	7403
AcyI	GRCGYC	2 cut(s)	84, 798
AfeI	AGCGCT	1 cut(s)	7481
AflII	CTTAAG	3 cut(s)	1016, 1468, 7091
AflIII	ACRYGT	6 cut(s)	1144, 1726, 3565, 4930, 5313, 7400
AgeI	ACCGGT	1 cut(s)	4371
AhdI	GACNNNNNGTC	1 cut(s)	2833
AjiI	CACGTC	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	4 cut(s)	2775, 2807, 2874, 2906
AleI	CACNNNNGTG	2 cut(s)	2717, 7401
AloI	GAACNNNNNNTCC	2 cut(s)	7206, 7238
Alw21I	GWGCWC	5 cut(s)	33, 1366, 1986, 3947, 6014
AlwNI	CAGNNNCTG	3 cut(s)	440, 4213, 6836
Aor13HI	TCCGGA	1 cut(s)	1111
Aor51HI	AGCGCT	1 cut(s)	7481
ApaI	GGGCCC	1 cut(s)	4042
ArsI	GACNNNNNNTTYG	2 cut(s)	4931, 4963
AseI	ATTAAT	2 cut(s)	2430, 8102
AsiGI	ACCGGT	1 cut(s)	4371
Asp700I	GAANNNNTTC	7 cut(s)	1647, 2319, 2886, 5077, 6720, 6863, 7695
AspA2I	CCTAGG	1 cut(s)	6380
AspLEI	GCGC	4 cut(s)	110, 365, 4581, 7482
AsuC2I	CCSGG	4 cut(s)	219, 5215, 6226, 7261
AsuII	TTCGAA	1 cut(s)	2812
AsuNHI	GCTAGC	4 cut(s)	3058, 3554, 6334, 8002
AvaII	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4369, 4906, 6377, 7647
AvrII	CCTAGG	1 cut(s)	6380
AxyI	CCTNAGG	2 cut(s)	936, 7247
BaeGI	GKGCMC	3 cut(s)	4042, 7395, 7615
BalI	TGGCCA	3 cut(s)	5, 3002, 4202
BamHI	GGATCC	3 cut(s)	1114, 6213, 8277
BanI	GGYRCC	3 cut(s)	3046, 7390, 7786
BanII	GRGCYC	5 cut(s)	33, 294, 1986, 3947, 4042
BauI	CACGAG	2 cut(s)	26, 4542
BbrPI	CACGTG	1 cut(s)	7403
BbsI	GAAGAC	2 cut(s)	1395, 2829
Bbv12I	GWGCWC	5 cut(s)	33, 1366, 1986, 3947, 6014
BceAI	ACGGC	4 cut(s)	95, 219, 2838, 7302
BcgI	CGANNNNNNTGC	2 cut(s)	3683, 3717
BciVI	GTATCC	2 cut(s)	1536, 1569
BclI	TGATCA	4 cut(s)	2971, 5461, 6919, 7489
BcnI	CCSGG	4 cut(s)	219, 5215, 6226, 7261
BfoI	RGCGCY	2 cut(s)	366, 7483
BfrI	CTTAAG	3 cut(s)	1016, 1468, 7091
BfuAI	ACCTGC	4 cut(s)	4217, 5415, 5676, 6141
BfuI	GTATCC	2 cut(s)	1536, 1569
BglII	AGATCT	4 cut(s)	415, 3028, 3289, 3956
BlnI	CCTAGG	1 cut(s)	6380
BmcAI	AGTACT	4 cut(s)	2355, 3436, 6675, 7881
Bme18I	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4369, 4906, 6377, 7647
BmeRI	GACNNNNNGTC	1 cut(s)	2833
BmgBI	CACGTC	1 cut(s)	139
BmrI	ACTGGG	5 cut(s)	582, 3717, 5230, 5782, 6383
BmtI	GCTAGC	4 cut(s)	3062, 3558, 6338, 8006
BmuI	ACTGGG	5 cut(s)	582, 3717, 5230, 5782, 6383
BoxI	GACNNNNGTC	2 cut(s)	2864, 7925
BpiI	GAAGAC	2 cut(s)	1395, 2829
BplI	GAGNNNNNCTC	2 cut(s)	3491, 3523
BpmI	CTGGAG	4 cut(s)	1096, 3476, 6028, 7539
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu14I	TTCGAA	1 cut(s)	2812
BpuEI	CTTGAG	8 cut(s)	2000, 3626, 5702, 5856, 5885, 6141, 7937, 8284
BpuMI	CCSGG	4 cut(s)	219, 5215, 6226, 7261
Bsa29I	ATCGAT	2 cut(s)	3339, 3793
BsaAI	YACGTR	4 cut(s)	5032, 5168, 7142, 7403
BsaBI	GATNNNNATC	3 cut(s)	375, 1716, 2970
BsaHI	GRCGYC	2 cut(s)	84, 798
BsaI	GGTCTC	3 cut(s)	1526, 3509, 4958
BsaWI	WCCGGW	2 cut(s)	1111, 4371
BsaXI	ACNNNNNCTCC	6 cut(s)	4361, 4391, 5714, 5744, 8028, 8058
Bse118I	RCCGGY	2 cut(s)	3550, 4371
Bse21I	CCTNAGG	2 cut(s)	936, 7247
Bse3DI	GCAATG	7 cut(s)	917, 1509, 2077, 3371, 3716, 5544, 7287
Bse8I	GATNNNNATC	3 cut(s)	375, 1716, 2970
BseAI	TCCGGA	1 cut(s)	1111
BseCI	ATCGAT	2 cut(s)	3339, 3793
BseJI	GATNNNNATC	3 cut(s)	375, 1716, 2970
BseMI	GCAATG	7 cut(s)	917, 1509, 2077, 3371, 3716, 5544, 7287
BseRI	GAGGAG	3 cut(s)	1009, 4664, 6188
BseSI	GKGCMC	3 cut(s)	4042, 7395, 7615
BseYI	CCCAGC	3 cut(s)	7015, 7309, 8192
BsgI	GTGCAG	7 cut(s)	945, 2446, 3551, 4068, 4149, 4509, 5423
Bsh1236I	CGCG	5 cut(s)	108, 158, 248, 296, 1484
Bsh1285I	CGRYCG	1 cut(s)	268
BshNI	GGYRCC	3 cut(s)	3046, 7390, 7786
BshTI	ACCGGT	1 cut(s)	4371
BshVI	ATCGAT	2 cut(s)	3339, 3793
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	5 cut(s)	33, 1366, 1986, 3947, 6014
BsiSI	CCGG	9 cut(s)	219, 1082, 1112, 3551, 4372, 5214, 6225, 6757, 7261
BslFI	GGGAC	5 cut(s)	128, 700, 874, 4382, 6568
BsmBI	CGTCTC	2 cut(s)	3242, 5789
BsmFI	GGGAC	5 cut(s)	128, 700, 874, 4382, 6568
BsmI	GAATGC	4 cut(s)	1500, 2456, 4106, 4258
Bso31I	GGTCTC	3 cut(s)	1526, 3509, 4958
Bsp119I	TTCGAA	1 cut(s)	2812
Bsp120I	GGGCCC	1 cut(s)	4038
Bsp1286I	GDGCHC	9 cut(s)	33, 294, 1366, 1986, 3947, 4042, 6014, 7395, 7615
Bsp13I	TCCGGA	1 cut(s)	1111
Bsp1407I	TGTACA	2 cut(s)	2359, 3106
Bsp19I	CCATGG	4 cut(s)	232, 897, 1745, 7650
BspDI	ATCGAT	2 cut(s)	3339, 3793
BspEI	TCCGGA	1 cut(s)	1111
BspFNI	CGCG	5 cut(s)	108, 158, 248, 296, 1484
BspHI	TCATGA	2 cut(s)	1683, 3823
BspMAI	CTGCAG	6 cut(s)	445, 4954, 5535, 5620, 6282, 7642
BspMI	ACCTGC	4 cut(s)	4217, 5415, 5676, 6141
BspOI	GCTAGC	4 cut(s)	3062, 3558, 6338, 8006
BspT104I	TTCGAA	1 cut(s)	2812
BspT107I	GGYRCC	3 cut(s)	3046, 7390, 7786
BspTI	CTTAAG	3 cut(s)	1016, 1468, 7091
BspTNI	GGTCTC	3 cut(s)	1526, 3509, 4958
BsrDI	GCAATG	7 cut(s)	917, 1509, 2077, 3371, 3716, 5544, 7287
BsrFI	RCCGGY	2 cut(s)	3550, 4371
BsrGI	TGTACA	2 cut(s)	2359, 3106
BssAI	RCCGGY	2 cut(s)	3550, 4371
BssNAI	GTATAC	1 cut(s)	1569
BssNI	GRCGYC	2 cut(s)	84, 798
BssSI	CACGAG	2 cut(s)	26, 4542
Bst1107I	GTATAC	1 cut(s)	1569
Bst2BI	CACGAG	2 cut(s)	26, 4542
Bst6I	CTCTTC	3 cut(s)	2310, 2682, 5703
BstACI	GRCGYC	2 cut(s)	84, 798
BstAFI	CTTAAG	3 cut(s)	1016, 1468, 7091
BstAPI	GCANNNNNTGC	3 cut(s)	1506, 5401, 7619
BstAUI	TGTACA	2 cut(s)	2359, 3106
BstBAI	YACGTR	4 cut(s)	5032, 5168, 7142, 7403
BstBI	TTCGAA	1 cut(s)	2812
BstDSI	CCRYGG	4 cut(s)	232, 897, 1745, 7650
BstEII	GGTNACC	1 cut(s)	7676
BstENI	CCTNNNNNAGG	2 cut(s)	3884, 4984
BstFNI	CGCG	5 cut(s)	108, 158, 248, 296, 1484
BstH2I	RGCGCY	2 cut(s)	366, 7483
BstHHI	GCGC	4 cut(s)	110, 365, 4581, 7482
BstMCI	CGRYCG	1 cut(s)	268
BstPAI	GACNNNNGTC	2 cut(s)	2864, 7925
BstPI	GGTNACC	1 cut(s)	7676
BstSLI	GKGCMC	3 cut(s)	4042, 7395, 7615
BstSNI	TACGTA	1 cut(s)	5168
BstUI	CGCG	5 cut(s)	108, 158, 248, 296, 1484
BstV2I	GAAGAC	2 cut(s)	1395, 2829
BstXI	CCANNNNNNTGG	6 cut(s)	1639, 2251, 5808, 6878, 7403, 7602
BstZ17I	GTATAC	1 cut(s)	1569
Bsu15I	ATCGAT	2 cut(s)	3339, 3793
Bsu36I	CCTNAGG	2 cut(s)	936, 7247
BsuI	GTATCC	2 cut(s)	1536, 1569
BsuTUI	ATCGAT	2 cut(s)	3339, 3793
BtgI	CCRYGG	4 cut(s)	232, 897, 1745, 7650
BtgZI	GCGATG	1 cut(s)	7218
BtrI	CACGTC	1 cut(s)	139
BtsI	GCAGTG	2 cut(s)	1364, 4731
BveI	ACCTGC	4 cut(s)	4217, 5415, 5676, 6141
CaiI	CAGNNNCTG	3 cut(s)	440, 4213, 6836
CciI	TCATGA	2 cut(s)	1683, 3823
CfoI	GCGC	4 cut(s)	110, 365, 4581, 7482
Cfr10I	RCCGGY	2 cut(s)	3550, 4371
ClaI	ATCGAT	2 cut(s)	3339, 3793
CseI	GACGC	2 cut(s)	5490, 6341
CspAI	ACCGGT	1 cut(s)	4371
CspCI	CAANNNNNGTGG	2 cut(s)	6761, 6796
DraI	TTTAAA	4 cut(s)	483, 1440, 4093, 6426
DrdI	GACNNNNNNGTC	1 cut(s)	1540
DriI	GACNNNNNGTC	1 cut(s)	2833
DseDI	GACNNNNNNGTC	1 cut(s)	1540
EaeI	YGGCCR	3 cut(s)	3, 3000, 4200
Eam1104I	CTCTTC	3 cut(s)	2310, 2682, 5703
Eam1105I	GACNNNNNGTC	1 cut(s)	2833
EarI	CTCTTC	3 cut(s)	2310, 2682, 5703
EciI	GGCGGA	2 cut(s)	2336, 6114
Ecl136II	GAGCTC	3 cut(s)	31, 1984, 3945
Eco105I	TACGTA	1 cut(s)	5168
Eco147I	AGGCCT	2 cut(s)	4073, 4238
Eco24I	GRGCYC	5 cut(s)	33, 294, 1986, 3947, 4042
Eco31I	GGTCTC	3 cut(s)	1526, 3509, 4958
Eco32I	GATATC	2 cut(s)	831, 7102
Eco47I	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4369, 4906, 6377, 7647
Eco47III	AGCGCT	1 cut(s)	7481
Eco53kI	GAGCTC	3 cut(s)	31, 1984, 3945
Eco72I	CACGTG	1 cut(s)	7403
Eco81I	CCTNAGG	2 cut(s)	936, 7247
Eco91I	GGTNACC	1 cut(s)	7676
EcoICRI	GAGCTC	3 cut(s)	31, 1984, 3945
EcoNI	CCTNNNNNAGG	2 cut(s)	3884, 4984
EcoO109I	RGGNCCY	4 cut(s)	4038, 4039, 4977, 6377
EcoO65I	GGTNACC	1 cut(s)	7676
EcoRI	GAATTC	1 cut(s)	1647
EcoRV	GATATC	2 cut(s)	831, 7102
EcoT22I	ATGCAT	8 cut(s)	376, 773, 1410, 1553, 1802, 3471, 6629, 7893
EcoT38I	GRGCYC	5 cut(s)	33, 294, 1986, 3947, 4042
Esp3I	CGTCTC	2 cut(s)	3242, 5789
FaqI	GGGAC	5 cut(s)	128, 700, 874, 4382, 6568
FauI	CCCGC	3 cut(s)	301, 3792, 5631
FauNDI	CATATG	2 cut(s)	3188, 6451
FbaI	TGATCA	4 cut(s)	2971, 5461, 6919, 7489
FblI	GTMKAC	2 cut(s)	1568, 4918
FriOI	GRGCYC	5 cut(s)	33, 294, 1986, 3947, 4042
GlaI	GCGC	4 cut(s)	109, 364, 4580, 7481
GsaI	CCCAGC	3 cut(s)	7019, 7313, 8196
GsuI	CTGGAG	4 cut(s)	1096, 3476, 6028, 7539
HaeII	RGCGCY	2 cut(s)	366, 7483
HapII	CCGG	9 cut(s)	219, 1082, 1112, 3551, 4372, 5214, 6225, 6757, 7261
HgaI	GACGC	2 cut(s)	5490, 6341
HhaI	GCGC	4 cut(s)	110, 365, 4581, 7482
Hin1I	GRCGYC	2 cut(s)	84, 798
Hin6I	GCGC	4 cut(s)	108, 363, 4579, 7480
HinP1I	GCGC	4 cut(s)	108, 363, 4579, 7480
HincII	GTYRAC	4 cut(s)	2696, 2983, 4054, 6534
HindII	GTYRAC	4 cut(s)	2696, 2983, 4054, 6534
HindIII	AAGCTT	6 cut(s)	635, 1739, 2751, 2945, 5250, 6159
HpaI	GTTAAC	1 cut(s)	6534
HpaII	CCGG	9 cut(s)	219, 1082, 1112, 3551, 4372, 5214, 6225, 6757, 7261
Hpy99I	CGWCG	6 cut(s)	86, 89, 143, 7073, 7323, 8100
Hsp92I	GRCGYC	2 cut(s)	84, 798
HspAI	GCGC	4 cut(s)	108, 363, 4579, 7480
Kpn2I	TCCGGA	1 cut(s)	1111
Ksp22I	TGATCA	4 cut(s)	2971, 5461, 6919, 7489
KspAI	GTTAAC	1 cut(s)	6534
LmnI	GCTCC	9 cut(s)	36, 1012, 3357, 4279, 5456, 5608, 6009, 6089, 8054
MfeI	CAATTG	4 cut(s)	1236, 1781, 6033, 6093
MhlI	GDGCHC	9 cut(s)	33, 294, 1366, 1986, 3947, 4042, 6014, 7395, 7615
MlsI	TGGCCA	3 cut(s)	5, 3002, 4202
MluNI	TGGCCA	3 cut(s)	5, 3002, 4202
Mox20I	TGGCCA	3 cut(s)	5, 3002, 4202
Mph1103I	ATGCAT	8 cut(s)	376, 773, 1410, 1553, 1802, 3471, 6629, 7893
MroI	TCCGGA	1 cut(s)	1111
MroXI	GAANNNNTTC	7 cut(s)	1647, 2319, 2886, 5077, 6720, 6863, 7695
MscI	TGGCCA	3 cut(s)	5, 3002, 4202
Msp20I	TGGCCA	3 cut(s)	5, 3002, 4202
MspCI	CTTAAG	3 cut(s)	1016, 1468, 7091
MspI	CCGG	9 cut(s)	219, 1082, 1112, 3551, 4372, 5214, 6225, 6757, 7261
MunI	CAATTG	4 cut(s)	1236, 1781, 6033, 6093
Mva1269I	GAATGC	4 cut(s)	1500, 2456, 4106, 4258
MvnI	CGCG	5 cut(s)	108, 158, 248, 296, 1484
NciI	CCSGG	4 cut(s)	219, 5215, 6226, 7261
NcoI	CCATGG	4 cut(s)	232, 897, 1745, 7650
NdeI	CATATG	2 cut(s)	3188, 6451
NheI	GCTAGC	4 cut(s)	3058, 3554, 6334, 8002
NmeAIII	GCCGAG	1 cut(s)	2375
NmuCI	GTSAC	7 cut(s)	475, 794, 1889, 2180, 5318, 5335, 7676
NsiI	ATGCAT	8 cut(s)	376, 773, 1410, 1553, 1802, 3471, 6629, 7893
NspV	TTCGAA	1 cut(s)	2812
OliI	CACNNNNGTG	2 cut(s)	2717, 7401
PaeI	GCATGC	5 cut(s)	771, 1821, 3473, 5395, 6631
PagI	TCATGA	2 cut(s)	1683, 3823
PaqCI	CACCTGC	2 cut(s)	5415, 5676
PasI	CCCWGGG	1 cut(s)	4042
PceI	AGGCCT	2 cut(s)	4073, 4238
PciI	ACATGT	5 cut(s)	1144, 1726, 3565, 4930, 5313
PctI	GAATGC	4 cut(s)	1500, 2456, 4106, 4258
PdmI	GAANNNNTTC	7 cut(s)	1647, 2319, 2886, 5077, 6720, 6863, 7695
PflMI	CCANNNNNTGG	1 cut(s)	6613
PfoI	TCCNGGA	2 cut(s)	217, 6818
PinAI	ACCGGT	1 cut(s)	4371
PmaCI	CACGTG	1 cut(s)	7403
PmlI	CACGTG	1 cut(s)	7403
Ppu21I	YACGTR	4 cut(s)	5032, 5168, 7142, 7403
PpuMI	RGGWCCY	1 cut(s)	6377
PscI	ACATGT	5 cut(s)	1144, 1726, 3565, 4930, 5313
PshAI	GACNNNNGTC	2 cut(s)	2864, 7925
PshBI	ATTAAT	2 cut(s)	2430, 8102
PsiI	TTATAA	1 cut(s)	1901
Psp124BI	GAGCTC	3 cut(s)	33, 1986, 3947
Psp1406I	AACGTT	1 cut(s)	5979
Psp5II	RGGWCCY	1 cut(s)	6377
PspCI	CACGTG	1 cut(s)	7403
PspEI	GGTNACC	1 cut(s)	7676
PspFI	CCCAGC	3 cut(s)	7015, 7309, 8192
PspOMI	GGGCCC	1 cut(s)	4038
PspPPI	RGGWCCY	1 cut(s)	6377
PstI	CTGCAG	6 cut(s)	445, 4954, 5535, 5620, 6282, 7642
PstNI	CAGNNNCTG	3 cut(s)	440, 4213, 6836
PvuII	CAGCTG	7 cut(s)	959, 2627, 3535, 4193, 5124, 6833, 7598
SacI	GAGCTC	3 cut(s)	33, 1986, 3947
ScaI	AGTACT	4 cut(s)	2355, 3436, 6675, 7881
SduI	GDGCHC	9 cut(s)	33, 294, 1366, 1986, 3947, 4042, 6014, 7395, 7615
SfuI	TTCGAA	1 cut(s)	2812
SinI	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4369, 4906, 6377, 7647
SmiI	ATTTAAAT	1 cut(s)	6426
SnaBI	TACGTA	1 cut(s)	5168
SphI	GCATGC	5 cut(s)	771, 1821, 3473, 5395, 6631
SseBI	AGGCCT	2 cut(s)	4073, 4238
SspI	AATATT	1 cut(s)	6320
SstI	GAGCTC	3 cut(s)	33, 1986, 3947
StuI	AGGCCT	2 cut(s)	4073, 4238
SwaI	ATTTAAAT	1 cut(s)	6426
TaqII	GACCGA	3 cut(s)	254, 2199, 7695
TauI	GCSGC	4 cut(s)	53, 248, 4009, 7015
TseFI	GTSAC	7 cut(s)	475, 794, 1889, 2180, 5318, 5335, 7676
Tsp45I	GTSAC	7 cut(s)	475, 794, 1889, 2180, 5318, 5335, 7676
TspGWI	ACGGA	7 cut(s)	290, 1060, 2073, 6446, 6871, 7209, 7630
Van91I	CCANNNNNTGG	1 cut(s)	6613
Vha464I	CTTAAG	3 cut(s)	1016, 1468, 7091
VpaK11BI	GGWCC	8 cut(s)	714, 1166, 1749, 2866, 4369, 4906, 6377, 7647
VspI	ATTAAT	2 cut(s)	2430, 8102
XagI	CCTNNNNNAGG	2 cut(s)	3884, 4984
XbaI	TCTAGA	2 cut(s)	4418, 5950
XcmI	CCANNNNNNNNNTGG	3 cut(s)	6115, 6660, 6878
XmaJI	CCTAGG	1 cut(s)	6380
XmiI	GTMKAC	2 cut(s)	1568, 4918
XmnI	GAANNNNTTC	7 cut(s)	1647, 2319, 2886, 5077, 6720, 6863, 7695
ZraI	GACGTC	2 cut(s)	85, 799
ZrmI	AGTACT	4 cut(s)	2355, 3436, 6675, 7881
Zsp2I	ATGCAT	8 cut(s)	376, 773, 1410, 1553, 1802, 3471, 6629, 7893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.